BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47530.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494219 jgi|Araly1|494219|fgenesh2_kg.8__35__AT5G47530.1 2145 0.0
Ahg890493 jgi|Araly1|890493|Al_scaffold_0007_2479 832 0.0
> Ahg494219 jgi|Araly1|494219|fgenesh2_kg.8__35__AT5G47530.1
Length=1467
Score = 2145 bits (1161), Expect = 0.0
Identities = 1363/1458 (93%), Gaps = 24/1458 (2%)
Strand=Plus/Plus
Query 35 CCCCTTCATACTTAAATCTTATCATTCATCCATCTTTTAATCAT-T-ACTCGAGATTCTG 92
||||||||||| ||||||| ||| |||||||||| |||| |||| | |||| ||||||||
Sbjct 18 CCCCTTCATACGTAAATCTCATCCTTCATCCATC-TTTAGTCATATAACTCAAGATTCTG 76
Query 93 TTTCCATGGCCATATCCTCAAATCTTCTCCTTTGTCTCTCTCTTTTCATTTTCATCATCA 152
|| ||||||||| |||||||||||||||||| || |||||| |||| || ||||||||||
Sbjct 77 TTACCATGGCCAAATCCTCAAATCTTCTCCTCTGCCTCTCTGTTTTGATCTTCATCATCA 136
Query 153 CCAAATCCGCCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTG 212
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CCGAATCCGCCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTG 196
Query 213 AGTCTTGCAACGACCTAC-CTGTTCTTGATTCCTTCCTCCACTACACTTACGATTCTTCT 271
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 197 AGTCTTGCAACGACCT-CTCTGTTCTTGATTCCTTCCTCCACTACACTTATGATTCTTCT 255
Query 272 TCAGGCAATCTCCAAATCGCGTATCGCCACACAAAGCTCACCCCCGGGAAATGGGTGGCA 331
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 256 TCAGGCAATCTCCAAATCGCGTATCGCCACACAAAACTCACCTCCGGGAAATGGGTGGCA 315
Query 332 TGGGCCGTGAATCCCACATCTACTGGCATGGTCGGAGCTCAAGCCATTGTGGCTTATCCA 391
||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 316 TGGGCAGTGAATCCTACATCCACTGGCATGGTCGGAGCTCAAGCCATTGTAGCTTATCCA 375
Query 392 CAATCAGACGGCACCGTTAGGGCTTATACGTCACCCATCAGTAGCTACCAAACGAGTCTC 451
||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct 376 CAATCAGACGGCAGCGTTAGGGCTTACACGTCACCCATCAGCAGCTACCAAACGAATCTC 435
Query 452 CTAGAAGCTGAGCTGAGTTTCAACGTCTCTCAGTTGTCTGCCACTTACCAAAACAACGAG 511
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 436 CAAGAAGCTGAGCTGAGTTTCAACGTCTCTGAGTTGTCTGCCACTTACCAAAACAACGAG 495
Query 512 ATGGTCATCTACGCAAT-TCTGAATCTTCCACTTGCGAATGGTGGAATCATTAACACTGT 570
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 496 ATGGTCATCTACGCAACGT-TGAATCTTCCACTTGCGAATGGTGGAATCATTAACACTGT 554
Query 571 GTGGCAAGATGGGTCACTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCTGGCAACAA 630
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 555 ATGGCAAGATGGGTCTCTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCCGGCAACAA 614
Query 631 TGTTCGTTCTGTTTCTACTCTTAACCTTGTCTCTGGTGCATCTGGATCCACCTCTACCGG 690
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 615 TGTTCGCTCTGTTTCTACTCTTAACCTTGTCTCCGGTGCATCTGGTTCCACCTCAACCGG 674
Query 691 AGCAGGAGGAG---CTTCCAAGCTACGCAAACGCAACATACATGGAATATTGAACGGTGT 747
|| |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 675 AGGAGGAGGAGGAGCTTCCAAGCTTCGCAAACGCAACATACATGGAATATTGAATGGTGT 734
Query 748 GAGCTGGGGTATAATGATGCCAATAGGAGCAATCATTGCTCGCTACTTGAAAGTCTCAAA 807
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 735 GAGCTGGGGAATAATGATGCCAATAGGGGCAATCATTGCTCGCTACTTGAAAGTCTCAAA 794
Query 808 ATCAGCAGATCCTGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCAT 867
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ATCAGCAGATCCAGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCAT 854
Query 868 TGGTGTTGCCGGTTGGGCGACCGGTCTCAAACTGGGCAACGAATCAGCCGGGATTCAGTT 927
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 855 TGGTGTTGCCGGTTGGGCCACAGGTCTCAAACTGGGCAGCGAATCAGCCGGGATTCAGTT 914
Query 928 TACCTTTCACCGTGCTGTTGGGATCGCTCTCTTCTGCCTCGCAACAATTCAGGTGTTTGC 987
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TACTTTTCACCGTGCTGTTGGGATCGCTCTCTTCTGCCTCGCAACAATTCAGGTGTTTGC 974
Query 988 AATGTTTTTGAGACCCAAACCAGAGCACAAGTACAGAGTCTACTGGAACATTTATCACCA 1047
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 975 AATGTTTCTGAGACCCAAACCAGAGCACAAATACAGAGTCTACTGGAACATTTATCACCA 1034
Query 1048 CACTGTAGGCTATTCAGTGATCATTCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACAT 1107
||| |||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1035 CACCGTAGGCTACACCGTGATCATCCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACAT 1094
Query 1108 CCTGAGCCCTGAGAAGCAGTGGAGAAACGCTTACACCGCCATAATCGTAGTACTAGGTAT 1167
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1095 CTTGAGCCCTGAGAAGCAGTGGAGAAACGCTTACACCGCTATAATCGTAGTACTAGGTAT 1154
Query 1168 AGTCGCGGTTGTGCTCGAAGGGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAAGCAGA 1227
|||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1155 AGTCGCGGCTGTGCTAGAAGCGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAAGCAGA 1214
Query 1228 GGCATCTGCGAAAACAAGTCAACGAGTAGGCAACGATGGTCGGTCTCTATACGTGTAGAC 1287
|| ||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1215 GGAATCTGCGAAAACAGGTCAGCGAGTAGGCAACGATGGTCGGTCTCTATACGTATAGAC 1274
Query 1288 T--CTGT--AA-AGATTAGAGTAAAATGTTCTGGTTTATTTGGTCATTATGGGCTTG-TG 1341
|||| || ||||||||||||||| |||||| |||||||||||||||||| || ||
Sbjct 1275 AGGCTGTGTAAGAGATTAGAGTAAAATTTTCTGGCTTATTTGGTCATTATGGGTTTTCTG 1334
Query 1342 GTTG-TTAATTTTTG-TTTGTTTTCGAGATTAAGTTAATACATTTGATGTTTAATAGTTG 1399
||| |||||||| | |||| || ||||||||| ||||||||||||||||| ||||||||
Sbjct 1335 -TTGGTTAATTTT-GATTTGATT-CGAGATTAAATTAATACATTTGATGTTGAATAGTTG 1391
Query 1400 TTGAAGTTGAA-AGACTCTTGTGCTCTTTTACAACATTCATGATGTGAGCTTTTGACAAA 1458
||||||||||| | ||||||||||||||| |||||||||| ||||||| ||| |||||||
Sbjct 1392 TTGAAGTTGAACA-ACTCTTGTGCTCTTT-ACAACATTCACGATGTGAACTTCTGACAAA 1449
Query 1459 CCATTTTATTTCATCGAC 1476
||||||||||||||||||
Sbjct 1450 CCATTTTATTTCATCGAC 1467
> Ahg890493 jgi|Araly1|890493|Al_scaffold_0007_2479
Length=1194
Score = 832 bits (450), Expect = 0.0
Identities = 873/1077 (81%), Gaps = 29/1077 (3%)
Strand=Plus/Plus
Query 162 CCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTGAGTCTTGCA 221
|||| ||||||| |||||| |||||||| ||||| | |||| | ||||||| || ||||
Sbjct 71 CCTTTGCTCAGACATGTTCTAACTACAAGTTCTCAAGCAACAATGTCTTTGACTCCTGCA 130
Query 222 ACGACCTACCTGTTCTTGATTCCTTCCTCCACTACACTTACGATTCTTCTTCAGGCAATC 281
||||||| ||| |||||||||| |||||||| ||||||||||| ||||| | || | |
Sbjct 131 ACGACCTCCCTTTTCTTGATTCTTTCCTCCATTACACTTACGAGTCTTCCACCGGGAGCC 190
Query 282 TCCAAATCGCGTATCGCCACACAAAGCTCACCCCCGGGAAATGGGTGGCATGGGCCGTGA 341
|||| ||||| ||||||||||| ||||||||| | || |||||||| || ||||||||||
Sbjct 191 TCCACATCGCTTATCGCCACACTAAGCTCACCTCTGGCAAATGGGTTGCTTGGGCCGTGA 250
Query 342 ATCCC-ACATCTACTGGCATGGTCGGAGCTCAAGCCATTGTGGCTTATCCACAATCAGAC 400
| ||| || ||||| || ||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 251 A-CCCAACGTCTACGGGAATGGTGGGAGCTCAAGCCATCGTGGCTTATCCACAAACAGAT 309
Query 401 GGCACCGTTAGGGCTTATACGTCACCCATCAGTAGCTACCAAACGAGTCTCCTAGAAGCT 460
|| || || |||| ||| || || |||||||| |||||||| ||||| || | ||| | |
Sbjct 310 GGTACTGTCAGGGTTTACACATCTCCCATCAGAAGCTACCAGACGAGCCTACAAGAGGGT 369
Query 461 GAGCTGAGTTTCAACGTCTCTCAGTTGTCTGCCACTTACCAAAACAACGAGATGGTCAT- 519
|| || ||||||||||||||| ||||||||| ||||| | ||||| ||||| || |
Sbjct 370 GATCTCAGTTTCAACGTCTCTGGGTTGTCTGCAACTTATGAGAACAATGAGATTGTTGTG 429
Query 520 CTACGCAATTCTGAATC-TTC-C---A-CTTGCGAATGGTGGAATCATTAACACTGTGTG 573
|| |||| |||||| | ||| | | |||| ||||||||||| ||||||||| |||||
Sbjct 430 CT-GGCAAGTCTGAAGCTTTCACAGGATCTTGGGAATGGTGGAACCATTAACACAGTGTG 488
Query 574 GCAAGATGGGTCACTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCTGGCAACAATGT 633
|||||||||| || |||| ||||||| || | ||||||||||||||||||||||||||||
Sbjct 489 GCAAGATGGGCCAATGTCTGGGAACAGTCTTTTGCCTCATCCAACTTCTGGCAACAATGT 548
Query 634 TCGTTCTGTTTCTACTCTTAACCTTGTCTCTGGTGCATCTGGATCCACCTCTACCGGAGC 693
||| || | || ||||| || || ||||| |||| || | | | | | | |||||
Sbjct 549 TCGATCCCTGTCCACTCTCAATCTGGTCTCCGGTGTTTCAGCAGCTGC-TGGA--GGAGC 605
Query 694 AGGAGGA-GCTTCCAAGCTACGCAAACGCAACATACATGGAATATTGAACGGTGTGAGCT 752
|||||| | ||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 606 TGGAGGAAG-TTCCAAGCTTCGAAAACGCAACATACATGGAATATTGAATGGTGTGAGCT 664
Query 753 GGGGTATAATGATGCCAATAGGAGCAATCATTGCTCGCTACTTGAAAGTCTCAAAATCAG 812
|||| || |||||||||||||| |||||||||||||| ||||||| ||| | |||||||
Sbjct 665 GGGGAATCATGATGCCAATAGGGGCAATCATTGCTCGATACTTGAGAGTAGCCAAATCAG 724
Query 813 CAGATCCTGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCATTGGTG 872
|||| ||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||
Sbjct 725 CAGACCCTGCTTGGTTCTACATTCACGTTTTCTGCCAGGCTTCTGCTTACATCATCGGTG 784
Query 873 TTGCCGGTTGGGCGACCGGTCTCAAACTGGGCAACGAATCAGCCGGGA-TTCAGTTTACC 931
||||||| ||||| || ||||||||||| || ||| ||| || ||| |||||| || |
Sbjct 785 TTGCCGGATGGGCCACAGGTCTCAAACTCGGTGGCGACTCA-CCAGGAATTCAGTATAGC 843
Query 932 TTTCACCGTGCTGTTGGGATCGCTCTCTTCTGC-CTCGCAACAATTCAGGTGTTTGCAAT 990
||||||||| | |||||||||||||||| | || || ||| ||||||||||||| ||
Sbjct 844 ACCCACCGTGCTATCGGGATCGCTCTCTTCT-CTCTAGCGACAGTTCAGGTGTTTGCGAT 902
Query 991 GTTTTTGAGACCCAAACCAGAGCACAAGTACAGAG-TCTACTGGAACATTTATCACCACA 1049
|||| |||| || ||||||||||||||| | || | |||||||||||||||| ||||| |
Sbjct 903 GTTTCTGAGGCCAAAACCAGAGCACAAGCATAG-GCTCTACTGGAACATTTACCACCATA 961
Query 1050 CTG-TAGGCTATTC-AGTGATCATTCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACAT 1107
| | | ||||| | | | ||||| || | |||||| |||||||| ||||| |||| |||
Sbjct 962 C-GATCGGCTACACTA-TAATCATCCTAGGGGTGGTTAACGTTTTCAAAGGGCTAGGCAT 1019
Query 1108 CCTGAG-CCCTGAGAAGCAGTGGAGAAACGCTTACACCGCCATAATCGTAG-TACTAGGT 1165
|||| ||| |||||||||||| ||| ||||||| | || || || | | || |
Sbjct 1020 ATTGAGTCCCA-AGAAGCAGTGGAAAAATGCTTACATTGGTATCATTGTTGCT-CTCGCC 1077
Query 1166 ATAGTCGCGGTTGTGCTCGAAGGGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAA 1222
|| || || || ||||||| || ||||||||||||||||| |||||| |||||
Sbjct 1078 ATTGTGGCCACCGTACTCGAAGCCTTCACTTGGTATGTAGTCATTAAGAGAAGGAAA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5