BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47540.1
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948148 jgi|Araly1|948148|scaffold_800035.1 1777 0.0
Ahg493148 jgi|Araly1|493148|fgenesh2_kg.7__2581__AT4G17270.1 1092 0.0
> Ahg948148 jgi|Araly1|948148|scaffold_800035.1
Length=1076
Score = 1777 bits (962), Expect = 0.0
Identities = 1037/1074 (97%), Gaps = 2/1074 (0%)
Strand=Plus/Plus
Query 353 GATATCGGCGGTGCGAAGATGAAAGGGCTTTTCAAGTCTAAGCCACGCACTCCTGCTGAC 412
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GATATCGGCGGTGCGAAAATGAAAGGGCTTTTCAAGTCTAAGCCACGCACTCCTGCTGAC 63
Query 413 CTTGTTCGACAAACCCGCGATCTCCTTCTCTTCTCCGATCGATCTACCTCTTTGCCTGAC 472
|||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 64 CTTGTTCGACAAACGCGCGATCTCCTTCTCTACGCCGATCGATCTACCTCTTTGCCTGAC 123
Query 473 CTCCGAGATTCCAAACGCGACGAAAAGATGGCGGAATTAAGCCGGAATATCCGTGACATG 532
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTCCGAGAATCCAAACGCGAAGAAAAGATGGCGGAATTAAGCCGGAATATCCGTGACATG 183
Query 533 AAGTCGATTCTCTACGGGAACAGCGAAGCAGAGCCTGTGGCAGAAGCTTGTGCACAGTTG 592
|||||||||||||| || ||||| ||||| |||||||| || ||||||||||||||||||
Sbjct 184 AAGTCGATTCTCTATGGAAACAGTGAAGCCGAGCCTGTCGCTGAAGCTTGTGCACAGTTG 243
Query 593 ACTCAAGAATTCTTTAAAGAGGATACTCTACGTCTCTTGATTACTTGTCTCCCTAAACTT 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ACTCAAGAATTCTTTAAAGAGGATACTCTACGTCTCTTGATTACTTGTCTCCCTAAACTT 303
Query 653 AACTTGGAGACGAGGAAAGATGCTACACAAGTTGTTGCAAATCTACAGAGGCAACAGGTT 712
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AACTTGGAGGCTAGGAAAGATGCTACACAAGTTGTTGCAAATCTACAGAGGCAACAGGTC 363
Query 713 AATTCACGGTTGATTGCTTCTGATTAT-TTAGAAGCCAACATTGATCTCATGGATGTTTT 771
||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||
Sbjct 364 AATTCACGGTTGATTGCATCTGATTATCTT-GAAGCCAACATTGATCTCATGGATGTTTT 422
Query 772 GATTGAAGGCTTCGAGAACACAGACATGGCTTTACACTATGGTGCTATGTTTAGGGAGTG 831
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 423 GATTGAAGGCTTCGAGAACACAGACATGGCTTTACACTATGGGGCTATGTTTAGAGAGTG 482
Query 832 TATCCGTCATCAGATTGTGGCTAAATATGTTTTGGAGTCTGACCATGTGAAGAAATTCTT 891
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 483 CATCCGTCATCAGATTGTGGCTAAATATGTTTTGGAGTCTGACCACGTGAAGAACTTCTT 542
Query 892 TGATTACATACAGCTTCCAAATTTCGACATTGCTGCCGATGCTGCTGCTACTTTTAAGGA 951
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 543 CGATTACATACAGCTTCCTAATTTCGACATTGCTGCTGATGCTGCTGCTACTTTTAAGGA 602
Query 952 ACTGCTGACAAGGCATAAGTCTACTGTTGCCGAGTTTCTCACCAAGAATGAAGACTGGTT 1011
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACTGCTGACAAGGCATAAATCTACTGTTGCCGAGTTTCTCACCAAGAATGAAGACTGGTT 662
Query 1012 TTTCGCAGACTACAACTCAAAGCTTCTTGAATCAAGTAATTATATAACCAGACGGCAAGC 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TTTCGCAGACTACAACTCAAAGCTTCTTGAATCAAGTAATTATATAACCAGACGGCAAGC 722
Query 1072 TATTAAGTTGTTGGGTGATATATTATTGGATCGATCAAATTCAGCTGTGATGACGAAATA 1131
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 723 TATTAAGTTGTTGGGTGATATATTACTGGATCGATCAAATTCAGCTGTGATGACGAAATA 782
Query 1132 TGTGAGCTCGAGGGATAACTTGAGGATTCTCATGAATCTTCTAAGAGAGTCAAGCAAGAG 1191
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 783 TGTGAGCTCAAGGGATAACTTGAGGATTCTCATGAATCTTCTGAGAGAGTCAAGCAAGAG 842
Query 1192 TATCCAAATAGAAGCATTCCATGTCTTTAAGCTGTTTGCAGCGAACCAAAACAAGCCTGC 1251
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 843 TATCCAAATAGAAGCATTCCATGTCTTCAAGCTGTTTGCAGCGAACCAAAACAAGCCTGC 902
Query 1252 GGATATAGTCAACATTCTGGTGGCCAACAGAAGCAAGCTTCTGAGATTGTTGGCTGATTT 1311
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GGATATAGTCAACATTTTGGTGGCCAACAGAAGCAAGCTTCTGAGATTGTTGGCTGATTT 962
Query 1312 GAAACCAGACAAAGAGGATGAGAGGTTTGAAGCAGACAAAAGTCAGGTTTTGAGAGAAAT 1371
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAAACCAGATAAAGAGGATGAGAGGTTTGAAGCAGACAAAAGTCAGGTTTTGAGAGAAAT 1022
Query 1372 CGCAGCCCTTGAACCTCGAGATCTTGCTTGAACCAACTAATGCAATTCATCCTT 1425
||||||||||||||| ||||||||||||||||||||| || |||| ||||||||
Sbjct 1023 CGCAGCCCTTGAACCACGAGATCTTGCTTGAACCAACCAACGCAAATCATCCTT 1076
> Ahg493148 jgi|Araly1|493148|fgenesh2_kg.7__2581__AT4G17270.1
Length=1430
Score = 1092 bits (591), Expect = 0.0
Identities = 895/1042 (86%), Gaps = 20/1042 (2%)
Strand=Plus/Plus
Query 371 ATGAAAGGGCTTTTCAAGTCTAAGCCACGCACTCCTGCTGACCTTGTTCGACAAACCCGC 430
|||| ||| |||||||| || || ||||| ||||| ||||| |||||||||| || |||
Sbjct 230 ATGAGAGGTCTTTTCAAATCCAAACCACGGACTCCCGCTGATATTGTTCGACAGACTCGC 289
Query 431 GATCTCCTTCTCTTCT-CCGATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACG 489
|||||||| ||| | | |||||||||| | |||||| |||||||| ||||| ||||||||
Sbjct 290 GATCTCCTCCTC-TATGCCGATCGATCCAACTCTTTCCCTGACCTTCGAGAGTCCAAACG 348
Query 490 CGACGAAAAGATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGG 549
||| |||||| ||| |||| ||||| || || || || |||||| |||||||| ||
Sbjct 349 CGAGGAAAAGCTGGTGGAACTAAGCAAGAGCATACGAGATTTGAAGTTAATTCTCTATGG 408
Query 550 GAACAGCGAAGCAGAGCCTGTGGCAGAAGCTTGTGCACAGTTGACTCAAGAATTCTTTAA 609
||||| || || |||||||| | ||||||||||| ||||||||||| || ||||||||
Sbjct 409 AAACAGTGAGGCTGAGCCTGTTTCTGAAGCTTGTGCTCAGTTGACTCAGGAGTTCTTTAA 468
Query 610 AGAGGATACTCTACGTCTCTTGATTACTTGTCTCCCTAAACTT-AACTTGGAGACGAGGA 668
| |||||||| || | |||| | |||| ||| ||| || || ||||||||| | ||||
Sbjct 469 GGCTGATACTCTTCGCCGCTTGCTCACTTCTCTTCCT-AATTTGAACTTGGAGGCCAGGA 527
Query 669 AAGATGCTACACAAGTTGTTGCAAATCTACAGAGGCAACAGGTTAATTCACGGT-TGATT 727
|||||||||||||||||||||||||||| ||||||||||| || ||||||| || | |||
Sbjct 528 AAGATGCTACACAAGTTGTTGCAAATCTTCAGAGGCAACAAGTCAATTCAC-GTCTTATT 586
Query 728 GCTTCTGATTAT-TTAGAAGCCAACATTGATCTCATGGATGTTT-TGA-TTGAAGGCTTC 784
||| |||||||| || ||| ||||||||||||| |||||| ||| | | | || || |||
Sbjct 587 GCTGCTGATTATCTT-GAATCCAACATTGATCTTATGGAT-TTTCT-AGTCGATGGGTTC 643
Query 785 GAGAACACAGACATGGCTTTACACTATGGTGCTATGTTTAGGGAGTGTATCCGTCATCAG 844
|| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||| ||||||
Sbjct 644 GAAAACACTGATATGGCGTTACACTATGGTACTATGTTTAGAGAGTGCATCCGCCATCAG 703
Query 845 ATTGTGGCTAAATATGTTTTGGAGTCTGACCATGTGAAGAAATTCTTTGATTACATACAG 904
||||| || |||||||||||||| ||| | || |||||||| || ||| | |||||||||
Sbjct 704 ATTGTTGCAAAATATGTTTTGGACTCTCAGCACGTGAAGAAGTTTTTTTACTACATACAG 763
Query 905 CTTCCAAATTTCGACATTGCTGCCGATGCTGCTGCTACTTTTAAGGAACTGCTGACAAGG 964
||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 764 CTTCCCAATTTCGACATTGCTGCTGATGCTGCTGCAACTTTTAAGGAACTTCTGACAAGG 823
Query 965 CATAAGTCTACTGTTGCCGAGTTTCTCACCAAGAATGAAGACTGGTTTTTCGCAGACTAC 1024
|| |||||||| ||||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct 824 CACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGTTTTTTTCAGACTAC 883
Query 1025 AACTCAAAGCTTCTTGAATCAAGTAATTATATAACCAGACGGCAAGCTATTAAGTTGTTG 1084
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 884 AACTCAAAGCTTCTTGAATCAACTAATTATATTACCAGACGGCAAGCTATTAAGTTGTTG 943
Query 1085 GGTGATATATTATTGGATCGATCAAATTCAGCTGTGATGACGAAATATGTGAGCTCGAGG 1144
|||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| |
Sbjct 944 GGTGATATATTATTGGATCGGTCAAATTCGGCTGTGATGACGAAGTATGTGAGCTCGATG 1003
Query 1145 GATAACTTGAGGATTCTCATGAATCTTCTAAGAGAGTCAAGCAAGAGTATCCAAATAGAA 1204
||||||||||||||||| ||||||||||| ||||| |||||||||| ||| || ||||||
Sbjct 1004 GATAACTTGAGGATTCTGATGAATCTTCTCAGAGAATCAAGCAAGACTATTCAGATAGAA 1063
Query 1205 GCATTCCATGTCTTT-AAGCTGTTTGCAGCGAACCAAAACAAGCCTGCGGATATAGTCAA 1263
|| |||||||| ||| |||||||||| ||||||||||||||||||| | || || | |||
Sbjct 1064 GCTTTCCATGT-TTTCAAGCTGTTTGTAGCGAACCAAAACAAGCCTTCAGACATCGCCAA 1122
Query 1264 CATTCTGGTGGCCAACAGAAGCAAGCTTCTGAGATTGTTGGCTGATTTGAAACCAGACAA 1323
|||||||||||| ||||||| ||||||||||||||||||||||||| | || | |||||
Sbjct 1123 CATTCTGGTGGCAAACAGAAACAAGCTTCTGAGATTGTTGGCTGATATCAAGCTGGACAA 1182
Query 1324 AGAGGATGAGAGGTTTGAAGCAGACAAAAG-TCAGGTTTTGAGAGAAATCGCA-GCCCTT 1381
|||||| ||||||||||||||||||||| | ||||||| ||||||| || ||| ||| ||
Sbjct 1183 AGAGGACGAGAGGTTTGAAGCAGACAAA-GCTCAGGTTGTGAGAGAGATTGCAAGCC-TT 1240
Query 1382 GAACCT-CGAGATCTTGCTTGA 1402
|| || ||||| |||||||||
Sbjct 1241 -AAGCTGCGAGAGCTTGCTTGA 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5