BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G47550.1

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494218 jgi|Araly1|494218|fgenesh2_kg.8__34__AT5G47550.1           634    0.0  


> Ahg494218 jgi|Araly1|494218|fgenesh2_kg.8__34__AT5G47550.1
Length=459

 Score =  634 bits (343),  Expect = 0.0
 Identities = 401/429 (93%), Gaps = 4/429 (1%)
 Strand=Plus/Plus

Query  15   AACAGTTACAAAGCAAAATGACTAGTAAGgtcgtcttccttctt-ctcctctctctcgtc  73
            ||| ||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||
Sbjct  1    AACGGTTACAAAGCAAAATGACTAGCAAGGTCGTCTTTCTTCTTAC-CCTCTCTCTCGTC  59

Query  74   gtcgtcctcctccctctctacgcctctGCGGCTGCCCGCGTCGGTGGTTGGAGTCCCATC  133
            ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  60   GTCCTCCTCCTCCCTCTCTACGCCTCTGCGGCGGCCCGCGTCGGTGGCTGGAGTCCCATC  119

Query  134  AGCAACGTTACGGACCCTCAAGTCGTAGAGATCGGTGAATTCGCGGTCTCCGAGTACAAC  193
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  120  AGCAACGTTACGGACCCTCACGTCGTAGAGATCGGGGAATTCGCGGTCTCCGAGTACAAC  179

Query  194  AAACGGAGCGAATCGGGACTCAAGTTCGAGACGGTTGTTAGCGGCGAGACTCAGGTCGTA  253
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  180  AAACGGAGCGAATCGGGACTCAAGTTCGAGACGGTTGTTCGCGGCGAGACTCAGGTCGTC  239

Query  254  TCTGGTACAAATTACCGTCTTAAGGTGGCGGCTAATGACGGCGACGGAGTGAGCAAGAAC  313
             ||||||| |||||||| |||| ||||||||||||||||||||| |||| ||||||||||
Sbjct  240  GCTGGTACGAATTACCGGCTTACGGTGGCGGCTAATGACGGCGAAGGAGCGAGCAAGAAC  299

Query  314  TACTTGGCAATCGTATGGGACAAGCCGTGGATGAAATTCAGAAATCTCACTTCCTTCGAG  373
            |||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  300  TACTTGGCGATTGTATGGGAAAAGCAGTGGATGAAATTCAGAAATCTCACTTCCTTCGAG  359

Query  374  CCTGCCAATAATGGTCGCTTCCTTTAAGCTTTTAACATGTAACCGCTCTTTATTAA-TAT  432
            ||||||||||||||||| |||||||||| |||| ||||||||||||||||| | || |||
Sbjct  360  CCTGCCAATAATGGTCGTTTCCTTTAAGTTTTTTACATGTAACCGCTCTTT-TAAAATAT  418

Query  433  TGCAGAAAC  441
            |||||||||
Sbjct  419  TGCAGAAAC  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19917217458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5