BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47560.1
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494217 jgi|Araly1|494217|fgenesh2_kg.8__33__AT5G47560.1 3040 0.0
> Ahg494217 jgi|Araly1|494217|fgenesh2_kg.8__33__AT5G47560.1
Length=2157
Score = 3040 bits (1646), Expect = 0.0
Identities = 2014/2184 (92%), Gaps = 55/2184 (3%)
Strand=Plus/Plus
Query 99 TTAAAAACGGAATAAACAGAATGAACGGTGGTGATGTCACCGTCGCCGGATCCGACGATC 158
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1 TTAAAAACAGAATAAACAGAATGAACGGTGGTGATGTCACCGTCGCCGGTTCCGACGA-C 59
Query 159 -TGAAATCTCCGCTCTTACCGGTCGTCCATAATGATGAACCATTCGAACGACAAACGGTG 217
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTGAAATCTCCGCTTTTACCAGTCGTCCATAATGATGAACCATTCGAACGACAAACGGTG 119
Query 218 GGACAACAACTTCGGACAATATTCACGCCCAAAAACTGTTACATCGCTCTTGGTCCTCTT 277
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 120 GGACAACAACTCCGGACAATATTCACGCCCAAGAATTGTTACATCGCTCTTGGTCCTCTT 179
Query 278 CTTTGCGCCGTCGTGTGTCTATGCGTAGATCTCGGGGGAGATGAAACGACGACGGCGAGG 337
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 180 CTTTGCGCCGTCGTGTGTCTATGCGTAGATCTCGGCGGAGATGACACGACGACGGCGAGG 239
Query 338 AACATGCTCGGTGTTTTGGTGTGGATGTTCGCGTGGTGGTTGACGGAGGCCGTTCCGATG 397
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AACATGCTCGGCGTTTTGGTGTGGATGTTCGCGTGGTGGTTGACGGAGGCCGTTCCGATG 299
Query 398 CCGATCACCTCCATGACGCCGCTCTTCCTCTTCCCTCTCTTTGGTATATCGGCTGCGGAT 457
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 300 CCGATCACCTCCATGACGCCGCTCTTCCTCTTCCCTCTCTTTGGAATATCGGCGGCGGAT 359
Query 458 GACGTAGCAAATTCTTACATGGATGACGTCATCTCCCTTGTACTCGGCAGCTTCATACTT 517
||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 360 GACGTGGCGAATTCTTACATGGATGACGTAATCTCCCTTGTCCTCGGCAGCTTCATACTC 419
Query 518 GCTCTCGCCGTCGAACACTACAACATCCATCGCCGGCTTGCCCTTAACATAACGTTGGTG 577
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GCTCTCGCCGTCGAACACTACAACATCCATCGCCGGCTCGCCCTTAACATAACGTTGGTG 479
Query 578 TTCTGCGTGGAGCCGCTAAACGCGCCGCTACTTCTGCTTGGCATCTGCGCCACAACAGCG 637
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 480 TTCTGCGTGGAGCCTCTAAACGCGCCGCTGCTTCTGCTTGGCATCTGCGCCACAACGGCG 539
Query 638 TTCGTAAGCATGTGGATGCATAACGTAGCAGCTGCAGTCATGATGATGCCTGTCGCTACG 697
||||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct 540 TTCGTGAGCATGTGGATGCACAACGTAGCAGCTGCGGTCATGATGATGCCAGTGGCTACG 599
Query 698 GGGATACTTCAGAGACTGCCCTCGTCATCATCGACGACGGAAGTGGTGCATCCGGCCGTG 757
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 600 GGGATACTTCAGAGACTGCCCTCTTCATCATCGTCGACAGAAGTGGTGCATCCGGCCGTG 659
Query 758 GGGAAGTTTAGCAGGGCGGTGGTGTTAGGTGTGATATACTCTGCGGCGGTTGGTGGGATG 817
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGAAGTTTTGCAGAGCGGTGGTGTTAGGTGTGATATACTCTGCGGCGGTTGGTGGGATG 719
Query 818 AGCACACTCACTGGAACAGGAGTGAATCTGATTCTTGTTGGAATGTGGAAAAGCTACTTC 877
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 720 AGCACACTCACTGGAACAGGAGTGAATCTGATACTTGTTGGAATGTGGAAAAGCTATTTC 779
Query 878 CCTGAGGCTGATCCGATCAGTTTTAGCCAATGGTTCTTCTTTGGCTTCCCATTGGCTTTG 937
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 CCTGAGGCTGATCCAATCAGTTTTAGCCAATGGTTCTTCTTTGGCTTCCCGTTGGCTTTG 839
Query 938 TGCATATTCGTGGTGCTTTGGTGTGTTCTTTGTGTTATGTATTGTCCTAAAGGAGCAGGA 997
|||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 840 TGCATATTTGTGGTGCTTTGGTGTATTCTATGTGTTATGTATTGTCCTAAAGGAGCAGGA 899
Query 998 CAAGCTCTCTCTCCTTATCTCCATAAATCTCATCTCAGGAGAGAGCTTGATTTGTTAGGG 1057
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 CAAGCTCTTTCTCCTTATCTCCATAAATCTCATCTTAGGAGAGAGCTTGATTTGTTAGGA 959
Query 1058 CCAATGAACTTCGCTGAGAAGATGGTCTTAGCCGTGTTTGGTGGGTTGGTTGTGTTGTGG 1117
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CCAATGAATTTCGCTGAGAAGATGGTCTTAGCCGTGTTTGGTGGGTTGGTTGTGTTGTGG 1019
Query 1118 ATGACAAGGAATATAACTGATGATATCCCCGGCTGGGGTCGGATCTTCGCCGGCCGAGCC 1177
|||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 1020 ATGACAAGAAATATAACAGATGACATCCCCGGCTGGGGTCGGATCTTCGACGGCCGGGCT 1079
Query 1178 GGGGATGGAACCGTGAGTGTGATGATGGCGACATTGTTGTTTATCATCCCAAGCAATATT 1237
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1080 GGGGATGGAACCGTGAGTGTGATGATGGCGACATTGTTGTTTATTATCCCGAGCAAGATT 1139
Query 1238 AAAAAAGGAGAGAAGCTAATGGACTGGAACAAATGCAAGAAACTACCATGGAACATTGTC 1297
||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||
Sbjct 1140 AAAAAAGGAGAGAAGCTAATGGATTGGAGCAAATGCAAGAAACTCCCATGGAACATTGTC 1199
Query 1298 TTGTTATTGGGAGCTGGATTCGCTATAGCCGATGGAGTACGCACCAGTGGCTTAGCTGAG 1357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTGTTATTGGGAGCTGGATTCGCTATAGCCGATGGAGTACGCACCAGTGGCTTAGCTGAA 1259
Query 1358 GTCTTATCCAAAGGACTTGTCTTCCTTGAAACGGCTCCTTACTGGGCCATTGCTCCAACG 1417
||||||||||||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct 1260 GTCTTATCCAAAGGACTAGTCTTTCTCGAGACAGCTCCTTACTGGGCCATTGCTCCAACC 1319
Query 1418 GTTTGCCTCATCGCTGCTACCATCACAGAGTTCACTTCAAACAACGCAACCACTACATTG 1477
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1320 GTTTGTCTCATCGCCGCTACCATCACAGAGTTCACCTCAAACAACGCAACCACTACATTG 1379
Query 1478 TTGGTTCCGTTACTCATCGAAATCGCAAAGAACATGGGGATCCATCCTTTGCTCTTGATG 1537
|||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 1380 TTGGTTCCGTTACTGATCGAGATTGCAAAGACCATGGGGATCCATCCTTTGCTCTTGATG 1439
Query 1538 GTTCCAGGAGCCATTGGGGCTCAGTTCGCTTTCTTGCTTCCCACGGGAACACCCTCTAAC 1597
|| || || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1440 GTCCCTGGTGCCATAGGGGCTCAGTTCGCTTTCTTGCTCCCCACGGGAACACCTTCTAAC 1499
Query 1598 GTCGTTGGGTTCACGACAGGGCATATAGAGATCAAAGACATGATCAAGACAGGCTTGCCT 1657
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1500 GTCGTTGGGTTCACAACAGGGCATATAGAGATCAAAGACATGATCAAAACAGGCTTGCCT 1559
Query 1658 CTCAAGATCGCTGGAACCATCTTTCTCTCCATCTTGATGCCCACTCTTGGGGCTTACGTT 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CTCAAGATCGCTGGAACCATCTTTCTCTCCATCTTGATGCCCACTCTTGGGGCTTACGTT 1619
Query 1718 TTTGCATCAATGGGAGGAGTTTAGTTCTACAAGCCAAGCACAAGACCATGT--ACACAAT 1775
|||||||||| ||||||||||||||||||| ||| |||||||||| ||| | |||| ||
Sbjct 1620 TTTGCATCAAAGGGAGGAGTTTAGTTCTACGAGCGAAGCACAAGAACATATGGACACTAT 1679
Query 1776 TGATTTATTGTACTATATTGTTTACTACCGTAATACATATG-T-AGAT-ATATAGTCAAT 1832
||||| ||||||||||| ||| | | || || |||| | | || | || | | |
Sbjct 1680 TGATTCATTGTACTATAATGT--AG-A---TA-TA--TATGGTCA-ATGA-AT-G--A-T 1724
Query 1833 GGAATGGGAAATTTAGATGAGGTC---AAAATTCACAAAATCGGCCCATTTTTGTAACCC 1889
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1725 GGAATGGGAAATTTAGATGTGGTCGCCAAAATTCACAAAATCGGCCCATTTTTGTAACCC 1784
Query 1890 GCCCGATTATAGTTTCCGGTACCATTGCTTTCTTTTGTGCTTCCAACGTACCGG-TAACT 1948
||| |||||||||||||||||| |||||||||||| |||| |||||||||| || ||| |
Sbjct 1785 GCCTGATTATAGTTTCCGGTACGATTGCTTTCTTTAGTGCGTCCAACGTAC-GGATAAGT 1843
Query 1949 TTGGTCCCtttttttttttG-TTTGGTGTGTATATGAAAAAGGGT--T-AATACAGATTT 2004
|||||| ||||||||||| ||| | | || || | || | | |||||||||||
Sbjct 1844 TTGGTCTTTTTTTTTTTTTACTTT--T-TCTAAATTTTTA-GGTTAATTAATACAGATTT 1899
Query 2005 GTGTGTTCTTCTTCCTAACAA-TAGCAACTAGTGGCAAATCCAGCGCGCGGTCCAAC--- 2060
|||||||||||||| | || | | || |||||||||| |||||||| | ||||||
Sbjct 1900 GTGTGTTCTTCTTCTTTACTAGT-GCCACTAGTGGCATATCCAGCG-G---TCCAACTTT 1954
Query 2061 -CTGGCCATACCATACCACGTCATTGTCCAGCGTGTCTTCTTCTGTTTTCGGTTTTCTac 2119
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1955 ACTGACCATACCATACCACGTCATTGTCCAGCGTGTCTTCTTCTGTTTCCGGTTTTCTAC 2014
Query 2120 aaacacaaaaagcaaagaa-aacaaaa---caTCAATGCATGGTTTATAACGTCTTGCTT 2175
|||| |||||||||||||| || |||| ||| |||||||||||| ||||| |||||||
Sbjct 2015 AAACTCAAAAAGCAAAGAAGAAAAAAAAAACATTAATGCATGGTTTGTAACG-CTTGCTT 2073
Query 2176 TTTAATTAGTTTTTGTCCTTTACACTCATTTATGTTCTTTCTTTGTCCTTTGCTATACAC 2235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2074 TTTAATTAGTTTTTGTCCTTTACACTCATTTATGTTATTTCTTTGTCCTTTGCTATATAC 2133
Query 2236 T--A---CTTGTCTATTGAATAAT 2254
| | |||||||||| ||||||
Sbjct 2134 TGGAGTACTTGTCTATTAAATAAT 2157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85360239045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5