BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47570.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494216 jgi|Araly1|494216|fgenesh2_kg.8__32__AT5G47570.1 915 0.0
> Ahg494216 jgi|Araly1|494216|fgenesh2_kg.8__32__AT5G47570.1
Length=584
Score = 915 bits (495), Expect = 0.0
Identities = 561/591 (95%), Gaps = 11/591 (2%)
Strand=Plus/Plus
Query 34 TTGATTGGATTTTGGATCGAAACCTGAAAAGAGCGAAAATGGCTGGAAGATTGAGCGGTG 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGATTGGATTTTGGATCGAAACCTGAAAAGAGCGAAAATGGCTGGAAGATTGAGCGGTG 60
Query 94 TTGCGTCACGAATCATGGGTGGAAACGGCGTCGTTGCCCGATCCGTCGGTTCTTCTCTCC 153
| || ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 61 TGGCCTCACGAATCATGGGTGGAAACGGCGTCGTAGCCAGATCCGTCGGATCTTCTCTCC 120
Query 154 GTCAACGCGCCGGAATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGATAAGCCGCTAT 213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 GTCAACGCGCCGGAATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGATAAGCCGCTTT 180
Query 214 CGGTAAACGACGAGCTGATGTGGGACAACGGGACTGCGTTTCCAGAGCCTTGCATAGATC 273
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CGGTAAACGATGAGCTGATGTGGGACAACGGGACTGCGTTTCCAGAACCTTGCATAGATC 240
Query 274 GGATTGCTGATACCGTCGGAAAGTATGAAGCATTGGCATGGTTGAGTGGCGGATTAGGGT 333
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATTGCTGATACCGTTGGAAAGTATGAAGCATTGGCATGGTTGAGTGGCGGATTAGGGT 300
Query 334 TCTTTGTTGGTCTCGGTCTGCTCGCTGTTTTGAACGACAAAGCTTCTAAGGTTCCATTTA 393
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 TCTTTGCGGGTCTCGGTCTGCTCGCTGTTTTGAACGACAAAGCTTCAAAGGTTCCATTTA 360
Query 394 CACCGAGAGTGTATCCATATGACAACCTGAGAGTTGAGCTTGGAGGAGAGCCATAGAGAC 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACCGAGAGTGTATCCATATGACAACCTGAGAGTTGAGCTTGGAGGAGAGCCATAGAGAC 420
Query 454 CCATCTAAGTGATCTGCTCATCAAAA-CAGGAAGCGTGTTTTCTTCACTGCTTTGTTCTT 512
| | ||||| |||||||||||| | || ||||||||||||||||||||||||||
Sbjct 421 --A---A-GTGATTTGCTCATCAAAAACTCAAA-CGTGTTTTCTTCACTGCTTTGTTCTT 473
Query 513 -T--AAAATGTTTGTTGTTTCCTGCTTAGAACTTGAAGACAAAAGAATAAAAAGAAGACT 569
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 474 CTTCAAAATGTTTGTTGTTTCCTGCTTAGAACATGAAGACAAAAGAATAAAAAGAAGACT 533
Query 570 TTGTTTTTATTATATGCGTTGTCTCTGTAATTAACAGTGACCAGTGAGAGA 620
||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 534 TTGTTTTTACTATATGCGTTGTCTCTGTAATTAACAGTGACCAATGAGAGA 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5