BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47580.1
Length=2573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494215 jgi|Araly1|494215|fgenesh2_kg.8__31__AT5G47580.1 3943 0.0
Ahg493150 jgi|Araly1|493150|fgenesh2_kg.7__2583__AT4G17250.1 1099 0.0
> Ahg494215 jgi|Araly1|494215|fgenesh2_kg.8__31__AT5G47580.1
Length=2554
Score = 3943 bits (2135), Expect = 0.0
Identities = 2435/2577 (94%), Gaps = 31/2577 (1%)
Strand=Plus/Plus
Query 1 GAGTTTTTCCCGGTTGATCTGCGATTCAACAGTGTCT-ATCCGAAATTTAGTTGAAATGG 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GAGTTTTTCCCGGTTGATCTGCGATTCAACAGTGTCTAATCCGAAATTTAGTTGAAATGG 60
Query 60 TCATAGAAGAGTGTAGTAGAAAGGTTGGAATTTGTGCTCAAAATCGGTCAGAGAAGTCAA 119
|||||||||||||| |||| || ||||||| | | | | ||||||||||||||
Sbjct 61 TCATAGAAGAGTGTGGTAG-AACGTTGGAA--T-T--T-----T--GTCAGAGAAGTCAA 107
Query 120 AGTTTGCTACTTTTCCAGTCTCTAGAATGATGTCAACAAGATCACTCATTTCCATGGAGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 AGTTTGCTACTTTTCCAGTCTCTAGAATGATGTCAACAAGATCACTCATTTCCATGGAGT 167
Query 180 CAACTTGAAGAAGAGCTTTTTCGATCAAATCCTTGAATTCGATTGATGGGTATCCTCGGC 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 168 CAACTTGAAGAAGAGCTTTT-CGATCAAATCCTTGAATTCGATTGATGGGTATCCTCGGC 226
Query 240 TGCGACGCCCATGGCGATTTGAACGATGCAGAGTTCAGCAAACCCTTACCTTCGATTGGT 299
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 227 TGCGACGCCCATGGCGATTTGAACGATGCAGAGTTCAGCAAGCCCTTACCTTTGATTGGT 286
Query 300 ATCTACGTTGCCGTAGCTTCACTCATCTGTGGTCTAGCCATGGCCGCCGATCTTATACAC 359
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 287 ATCTACGTTGCCGTAGCTTCACTCATCTGTGGTCTAGCCATGGCCGCTGATCTTATTCAC 346
Query 360 GGCTTCCGACACCGCAAATTCTGGTTTCCCTGTAAGTTCTTCTCTCTCAACGCCACTTCT 419
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 347 GGCTTCAGACACCGCAAATTCTGGTTTCCGTGTAAGTTCTTCTCTCTCAACGCCACTTCT 406
Query 420 CTGACTTTCATCGCTGTCGGAATCAAACTCTCTGTGGATCTCAACACTTCCATGCCGAGT 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 407 CTGACTTTCATCGCTGTCGGAATCAAACTCTCTGTGGATCTCAACACTTCAATGCCGAGT 466
Query 480 CGTCAGGATCAGTTAGCTAAACTCAGCAGCACCGTCTTTGTATGTACTGTGATGGGTAAT 539
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||
Sbjct 467 CGTCAGGATCAGTTAGCTAAGCTCAGCAGCACCGTCTTTGTGTGTACGGTGATGGGCAAT 526
Query 540 TCGATGCCTTCTCTGGGTATTATGGACAACAATGATCTCCTCATGAATCTTATGGCTTTA 599
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 527 TCGATGCCTTCTCTGGGTATAATGGACAACAATGATCTCCTTATGAATCTTATGGCTTTA 586
Query 600 GGGATTCTTGTCATCACTGATGTTGTTAACATCTGTATTCAGTTGGGTACTGGTGCGATT 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GGGATTCTTGTAATCACTGATGTTGTTAACATCTGTATTCAGTTGGGTACTGGTGCGATT 646
Query 660 TATGTTTTCTCTGAGGAACATTTTCTGGTCGTACTTCTCATGCTTCTTATGCTTATGATC 719
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TATGTTTTCTCTGAAGAACATTTTCTGGTCGTACTTCTCATGCTTCTTATGCTTATGATC 706
Query 720 TTGTGTTTCTCGGCCACCACAGTTCCCACTACGAAAAGAATCTTGGAGAG-TAAGTACAA 778
|| |||||||||||||| || |||||||| |||||||||||||||||| | |||||||||
Sbjct 707 TTCTGTTTCTCGGCCACTACTGTTCCCACCACGAAAAGAATCTTGGAG-GCTAAGTACAA 765
Query 779 TAAGAGGTACGACGTTGCTATGAAGTGTCCTTTGGCTACAGAGAGAACAGTTGCTAAGAA 838
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 766 GAAGAGGTACGACGTTGCCATGAAGTGTCCTTTGGCTACAGAGAGAACTGTTGCTAAGAA 825
Query 839 AATTCAGCAAGATTTGTCAAAGTTTTGGATGATGGCTCATACTAGTAGCCCTCAATTCGT 898
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 826 AATTCAGCAAGATTTGTCAAAGTTCTGGATGATGGCTCATACTAGTAGCCCTCAATTCGT 885
Query 899 GATGGCTCGTTCTGTCACGTGCACTGCTTCTGGTTTCTTCTGTCTCCTGAGTGCCATTAC 958
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 886 GATGGCTCGTTCTGTCACGTGCACTGCTTCTGGTTTCTTCTGTCTTTTGAGTGCCATTAC 945
Query 959 GCTTGGTGAAGCTATGGTTAGGAGTTACTTTTTAAGACCAAGGTCACTTGGGTTCTGCCA 1018
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GCTTGGTGAAGCCATGGTGAGGAGTTACTTTTTAAGACCAAGGTCACTTGGGTTCTGCCA 1005
Query 1019 TGGAGATTCTGATTACAAATGGTCAACTTCTCTGGTTCTTGTTTGCCAGACTACTACTGT 1078
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1006 TGGAGATTCTGATTACAAATGGTCAACCTCTCTGGTTCTTGTTTGCCAGACTACTGCCGT 1065
Query 1079 -AGCTATAGGGACCATTGCTCCTGCGATCAGATGGTTCACGGCTGTGAACTTCAGGTGTC 1137
| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1066 GACC-ATAGGGACCATTGCTCCTGCGATCAGATGGTTCACTGCTGTGAACTTCAGGTGTC 1124
Query 1138 CGATTAGAGGAAAGAAGTATTATAGAGATGAGTTTAGAATAGAGAGTTACTGGACACATT 1197
| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1125 CTATTAGAGGAAAGAAGTATTATAGGGATGAGTTTAGAGTAGAGAGTTACTGGACACATT 1184
Query 1198 GGTTCTCAGAGAAGAAGCAACATCCCTTAAGCCTTTGGATCCTCAAAGAACGCAGATACA 1257
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1185 GGTTCTCAGAGAAGAAGCAACATCCCTTAAGCCTTTGGATCCTCAAAGATCGCAGATACA 1244
Query 1258 GGAAGACTGCACACAATGCAAAACGCTGGATATTGGATGTATGTATTGTGATACAGTATG 1317
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 GGAAGATTGCGCACAATGCAAAACGCTGGATATTGGATGTATGTATTGTGATACAGTATG 1304
Query 1318 TGATTGTGTTTGGTAGCAAAATTATCCGTTACATCTCGGTATCCTGTGTGGGTAAGATCT 1377
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1305 TGATTGTGTTTGGTAGCAAAATTATCCGTTACATCTCGGTTTTCTGTGTGGGTAAGATCT 1364
Query 1378 TGTTGTGCTGTCATTTCGCCTTAAGGACCAGTAATACTATCACACACAGTGAGTCAGAAA 1437
|| |||||||| |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TGATGTGCTGTTATTTTGTCTTAAGGACCAGTAATACTATCACACACAGTGAGTCAGAAA 1424
Query 1438 AATCCGATTCAAATCCAAGCTCGAGACAGGACCTAGCGAGTTTTGTCCTGCACCTTGAAG 1497
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1425 AATCCGATTCTAATCCAAGCTCGAGACAGGACCTTGCGAGTTTTGTCCTGCATCTTGAAG 1484
Query 1498 GAGAGGACCCGCTGGTGGATGTGATGGTGCGGAGCAACCGGGAAGCGACAGATCATTGGA 1557
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1485 GAGAGGATCCGCTGGTGGATGTGATGGTGCGGAGCAACCGGGAAGCCACAGATCATTGGA 1544
Query 1558 TAGAGAAGGGCAGAAAGAAACAACCAGTGAATCTGATAGAGCTTTTGGAAGCAACAACAC 1617
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TAGAGAATGGCAGAAAGAAACAACCAGTGAATCTGATAGAGCTTTTGGAAGCAACAACAC 1604
Query 1618 CCATTTCAAAAGGATTTGAAGGGATTGCAGAGTTCGACAGCAACAAGGTGGCTTCTCTGG 1677
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1605 CCATTTCAAAAGGATTTGATGGGATTGCAGAGTTTGACAGCAACAAAGTGGCTTCTCTTG 1664
Query 1678 CCCACGGAGAACCGCCCAATTGTTGGGCTCTCCCGCTTGTAACACTCACAAGTATTGCTG 1737
|||||||||| || ||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1665 CCCACGGAGAGCCACCCAATTGTTGGGCTCTCCCGCTGGTAACACTCACAAGCATCGCTG 1724
Query 1738 TTGCACTTCCCGACATCAAGCCCTCCTCCCTGAAGAAGTTACTCAATGCTGTCAACGAGG 1797
|||| ||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct 1725 TTGCTCTTCCTGACATCAAGCCCCCCTCCCTCAAGAAGTTACTCAATGCAGTCAACGAGG 1784
Query 1798 CACTGGAATATGTCAACAAGTTTGAATGCGTCCTGGATACCGGAGGAGAGTCAGTTAACC 1857
||||||| | |||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 1785 CACTGGACTTTGTCAACAAGTTTGAACGCGTCCTGGATACCGGAGGAGAGTCGGCTAACC 1844
Query 1858 TCAGGAAAGCTGCTGAGGTCGTTTGGCTAGGTGTTGATCTCTATCACAAGTGGTTTGATG 1917
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 1845 TCAGGAAAGCTGCTGAGGTAGTTTGGCTAGGGGCTGATCTCTATCACAAGTGGTTTGATG 1904
Query 1918 TGGATCTTCGGAAACTATCAAAGCAACAAAGAAATCCAGAAGAAACCCTTCGGGAGCTGA 1977
|||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||| |
Sbjct 1905 TGGATCTTAGGAAACTATCAAAGCATCAAAGAAATCCAGAAGAAACCGTTCGTGAGCTCA 1964
Query 1978 TGGAAATCGCGAAGAAAGAGTTCTCAGAGTCATGGCAGATGAACCTGATGGTATGCATGA 2037
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1965 TGGAAATCGCGAAGAAAGAGTTCTCAGAGTCATGGCAGATGAACCTGATGGTGTGCATGA 2024
Query 2038 AGCACAAGCCCTCTCACTGGCCCATCAAGACTCTAGCAGCCAACTCCATGTACCGAATCT 2097
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 2025 AGCACAAGCCCTCTCACTGGCCCATCAAGACTCTAGCGGCAAACTCCATGTACCGAATAT 2084
Query 2098 GTCAAACAATTCTACT-AACTTACGAATCAAGAGACTATGGAACAGGGGAAGCTCTGTTG 2156
||||||||||||| || || |||||||||||||||||| |||||||||||||| || |||
Sbjct 2085 GTCAAACAATTCTGCTCAA-TTACGAATCAAGAGACTACGGAACAGGGGAAGCCCTATTG 2143
Query 2157 AGAAAGCTGGAAAGCACAATATCAGACATAGTGTCAGGTTGCTTTTGCAACGTAGCACAA 2216
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2144 AGAAAGCTGGAAAGCACAATATCAGACATAGTTTCAGGTTGTTTTTGCAACGTAGCACAA 2203
Query 2217 GTGATATCCGTCAAGTGTTTGGTGTCAGCTGTAGAAGTAAGGGAAGAATCAGTAAGAGGA 2276
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 2204 GTGATATCCGTCAAGTGTTTGGTGTCGGCTGTAGAAGTGAGGGAAGAATCAGTGAGAGGA 2263
Query 2277 GCAGCTCTGCATCTGGGAAGAACAGAGAAGATTCTAGAGATCTTAGAGAGAAGAAGGTTA 2336
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 2264 GCGGCTCTGCATCTGGGAAGAACAGAAAAGATTCTAGAGATATTAGAGAGAAGAAGCTTA 2323
Query 2337 CCTAAATTGAGATGTGATCAGATGAAGAACATCGACGAATGGAGAGCATTCTACAAGATT 2396
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2324 CCTAAATTGAGATGTGATCAGATGAAGAACATCGATGAATGGAGAGCATTCTACAAGATA 2383
Query 2397 AACTCTTGCG-AATGT-GATAATAACAACAAGACAGTTTATCCCGACTCGGACGAACTGC 2454
||||||| || ||||| | |||||| | ||| |||||||||| || |||||||||||||
Sbjct 2384 AACTCTT-CGGAATGTAG-TAATAAGAGCAACACAGTTTATCAGGAGTCGGACGAACTGC 2441
Query 2455 GCCTCACTGTTGAGTAGTTTATAGATATGTTAAAGGTTGTAGCTTTTTCTGTTTTTGTAC 2514
|||| |||||||| ||| | || ||| ||||||| ||||||||||||||||||||||||
Sbjct 2442 GCCTAACTGTTGAATAGAT-AT-GAT--GTTAAAGATTGTAGCTTTTTCTGTTTTTGTAC 2497
Query 2515 CTTTGTGTATTCAC-C-ACATGAATCTCTTTGTATATAGTAAGAATCTGAAGCTTTT 2569
|| ||||||||||| | |||||||| || ||||||||||||||||||||||||||||
Sbjct 2498 CTCTGTGTATTCACACCACATGAATGTCATTGTATATAGTAAGAATCTGAAGCTTTT 2554
> Ahg493150 jgi|Araly1|493150|fgenesh2_kg.7__2583__AT4G17250.1
Length=2283
Score = 1099 bits (595), Expect = 0.0
Identities = 1656/2153 (77%), Gaps = 133/2153 (6%)
Strand=Plus/Plus
Query 240 TGCGACGCCCATGGCGATTTGAA-CGATGCAGAGTTCAGCAAACCCTTACCTTCGATTGG 298
|||||| |||||||| || | || ||| ||||||||||||| || || || ||||| ||
Sbjct 22 TGCGACTCCCATGGCAATCT-AAGCGACACAGAGTTCAGCAAGCCGTTGCCATCGATAGG 80
Query 299 TATCTACGTTGCCGTAGCTTCACTCATCTGTGGTCTAGCCATGGCCGCCGATCTTATACA 358
| | |||||||| | ||||||| | |||||||| | |||||| |||||||| | ||
Sbjct 81 TGTATACGTTGCTGCAGCTTCAGTGATCTGTGGAGTTGCCATGTTTTCCGATCTTCTTCA 140
Query 359 CGGCTTCCGACACCGCAAATTCTGGTTTCCC-TGTAAGTTCTTCTCTCTCAACGCCACTT 417
||||||||| ||||| || |||||| ||||| || || ||||||||||||||||| ||
Sbjct 141 CGGCTTCCGGCACCGTAAGTTCTGG-TTCCCTTGCAAATTCTTCTCTCTCAACGCTACCA 199
Query 418 CTCTGA-CTTTCATCGCTGTCGGAATCAAACTCT-CTGTGGATCTCAACACTTCCATGCC 475
|||| | |||| ||| ||||| | ||||||||| || |||||||||||||||| |||||
Sbjct 200 CTCTCACCTTT-ATCTCTGTCTGCGTCAAACTCTCCT-TGGATCTCAACACTTCTATGCC 257
Query 476 GAGTCGTCAGGATCAG-TTAGCTAAACTCAGCAGCACCGTCTTTGTATGTACTGTGATGG 534
||||| || |||||| || ||||||||||| |||| |||||| || || ||||||||||
Sbjct 258 TAGTCGCCAAGATCAGCTT-GCTAAACTCAGTAGCAGCGTCTTCGTCTGCACTGTGATGG 316
Query 535 GTAATTCGATGCCTTCTCTGGGTATT-ATGGACA-ACAATGATCTCCTCATGAATCTTAT 592
|||||| ||||||||||| ||| || |||| || |||| |||||||||||||| || |
Sbjct 317 CTAATTCCATGCCTTCTCTTGGT-TTCATGGTCACACAA-GATCTCCTCATGAACCTCGT 374
Query 593 GGCT-TTAGGGATTCTTGTCATCACTGATGTTGTTAACATCTGTATTCAGTTGGGTACTG 651
|||| || |||||||| || ||||||||||||||||| |||||||| || ||||| || |
Sbjct 375 GGCTCTT-GGGATTCTAGTTATCACTGATGTTGTTAATATCTGTATCCAATTGGGCACAG 433
Query 652 GTGCGATTTATGTTTTCT-CTGAGGAACATTTTCTGGTCGTACTTCTCATGCTTCTT-AT 709
| || || |||||||| | || | ||||| ||| ||| | |||| ||| || || ||
Sbjct 434 GAGCTATATATGTTTT-TACTCAAGAACACGCTCTCGTCATTGTTCTGATG-TTTTTGAT 491
Query 710 GCTTATGATCTTGTGTTTCTCGGCCACCACAGTTCCC-ACTACGAAA-AGAATCTTGGAG 767
| ||||||||||| ||||||| || | ||||| |||| | || ||| | |||| |||
Sbjct 492 GTTTATGATCTTGAGTTTCTCTGCTATCACAG-TCCCGGCCAC-AAAGCGTTTCTTAGAG 549
Query 768 AGTAAGTACAATAAGAGGTACGACGTT-GCTATG-A--AGTGTCCTTTGGCTACAGAGAG 823
||||||||| ||||| ||||| ||| ||| || | ||||||||| | |||||||||
Sbjct 550 CTTAAGTACAAGAAGAGATACGA-GTTCGCTTTGAAGCAGTGTCCTTCGTATACAGAGAG 608
Query 824 -A--ACA---GTTGCTAAGAAAATT-CAGCAAGATTTG-TCAAAGTTTTGGATGATGGCT 875
| | | ||| ||||| || || ||||| || | ||| || ||||||||||||
Sbjct 609 AAGGAGAGGGGTTCCTAAG---CTTAAAG-AAGATCTGATGAAA-TTCTGGATGATGGCT 663
Query 876 CATACTAGTAGCCCTCAATTCGTGATGGCTCGTTCTGTCACGTGCACTGCTTCTGGTTTC 935
|| ||| ||||||||| || ||||||||||| ||||| || ||||| | |||||||||
Sbjct 664 CACACTTCTAGCCCTCAGTTTGTGATGGCTCGCTCTGTTACTTGCACCACCTCTGGTTTC 723
Query 936 TTCTGTCTCCTGAGTGCCATTACGCTTGG-TGAAGCTATGGTTAGGAGTTACTTT-TT-A 992
||||| || |||| || ||||| |||| |||||| ||||| | ||||||| || |
Sbjct 724 CTCTGTTTCTTGAGCGCAATTAC-ATTGGCTGAAGCCATGGTCCGTTCTTACTTTCTTCA 782
Query 993 AGACCAAGGTCACTTGGGTTCTGCCATGGAGATTCTGATTACAAATGGTCAACTTCTCTG 1052
| | | ||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 783 A-A-CTCGGTCACTTGGGTTCTGCAATGGAGATTCTGATTACAAATGGTCAACCACTTTG 840
Query 1053 GTTCTTGTTTGCCAGACTA-CTACTGTAGCTATAGGGACCATTGCTCCTGCGATCAGATG 1111
||||| || | ||| || | || | ||||| ||||| ||| ||||||| |||| ||||||
Sbjct 841 GTTCTAGTCTCCCAAAC-AGCTGCAGTAGCCATAGGAACCGTTGCTCCAGCGAGCAGATG 899
Query 1112 GTTCACGGCTGTGAACTTCAGGTGTCCGATT-AGAGGAAAGAAGTATTAT-AGAGATGAG 1169
||| | || |||||||| |||||||| ||| ||| |||||| | || | | |||||||
Sbjct 900 GTTGAAAGCAGTGAACTTGAGGTGTCC-ATTTAGAACAAAGAAATCTT-TGAAAGATGAG 957
Query 1170 TTTAGAATAGAGAGTTACTGGACACATTGGT-TCTCAGAGAAGAA-GCAACATCCCTT-A 1226
|| ||| |||||||||| ||| | | || | || | |||||||| | ||| ||| || |
Sbjct 958 TTGAGAGTAGAGAGTTATTGGGTAGAGTG-TCTCGCTGAGAAGAAAG-AACGTCCTTTGA 1015
Query 1227 AGCCTTTGGATCCTCAAAGAACGCAG-ATACAGGAAGACT-GCACACAATGCAAAACGCT 1284
| | ||||||| ||| | | ||| | | ||||||| || |||||| | | ||| || |
Sbjct 1016 A-CTTTTGGATGCTCCATGGTCGCCGCAG-CAGGAAG-CTTGCACACGACGTAAACCGGT 1072
Query 1285 GGATA-TTGGATGTATGTATTGTGATACAGTATG-TGATTGTGTTTGG-TAGCAAAATTA 1341
||| ||| || | || |||| | |||||||| | || || | ||| |||||| ||
Sbjct 1073 TGATGCTTG-ATATCTGCATTGCAACACAGTATGGT-ATAGT-TCTGGCTAGCAAGTTTC 1129
Query 1342 TCCGTTACATCTCGGTATCCTGTGTGGGTAAGA-TCTTG-T-TGT-GCTGTCATTTCGCC 1397
|||||| |||| |||| | ||| || ||| || ||||| | ||| | | | ||||| ||
Sbjct 1130 TCCGTTTCATCACGGTCTATTGTTTGAGTA-GAATCTTGCTATGTTGTTTTTATTTCACC 1188
Query 1398 TT-AAGGACCAGTAATACTATCACACACAG-TGAGTCAGAAAAATCCGATTCAAATCCAA 1455
| || | ||| || || | || || | |||||| || | ||||||||||
Sbjct 1189 TACAA--A--AGTGATTCTGTTGCAAAC-GCTGAGTCC------TCGGGTTCAAATCCA- 1236
Query 1456 GCTCGAGACAGGACCTAGCGAGTTTTGTCCTGCACCTTGAAGGAGAGGACCCGCTGGTGG 1515
|| | || | | || | | ||| || ||||| |||||||||||||| | ||||||
Sbjct 1237 --TC-A-AC-G-A--TA-CAA-TTT-GTTCTGCATCTTGAAGGAGAGGAGGAGATGGTGG 1285
Query 1516 A-TGTGATGGTGCGGAGCAACCGGGAAGCGACAGATCA-TTGGATAGAGAAGGG-CAGAA 1572
| | |||| ||||||||||| | || ||||| || ||| ||| | || || | |||
Sbjct 1286 ACTAC-ATGGCACGGAGCAACCGTGTGGCCACAGACCACTTG-ATACAAAAAGGTCGGAA 1343
Query 1573 AGAAACAACCAGTGAATCT-GATAGAGCTTTTGGAAGCAACAACACCCATTTCAAAAGGA 1631
||||||||| || || || ||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 1344 -GAAACAACCCGTAAA-CTTGATAGAGCTCTTGGAGGCAACAACTCCCATCTCAAAAGGA 1401
Query 1632 TTTGAAGGGATT-GCAGAGTTCGACAGCAACAAGGTGGCTTCTCTGGCC-CACGGAGAAC 1689
||||||||||| | ||| || |||||| || |||| |||||||||||| | ||||| |
Sbjct 1402 TTTGAAGGGATCCG-AGACTTTGACAGCGACGAGGTCGCTTCTCTGGCCTCT-GGAGAGC 1459
Query 1690 CGCCCAATTGTTGGGCTCTCCCGCTTGTAACACTCACAAGTATTGCTGTTGCACTTCCCG 1749
| || ||| ||||||| || || || |||||||| || || || ||||| || |||||
Sbjct 1460 CACCTAATAGTTGGGCCCTTCCACTGGTAACACTGACGAGCATCGCTGTCGCTCTTCCTA 1519
Query 1750 ACATCAAGCCCTCCTCCCTGAAGAAGTTACTCAATGCTGTCAACGAGGCACTGGAATATG 1809
|||||||||| | ||| |||||||||||| | || ||||| ||||||||| ||| ||||
Sbjct 1520 ACATCAAGCCTTACTCACTGAAGAAGTTAGTGAAAGCTGTAAACGAGGCATTGGTCTATG 1579
Query 1810 TCAACAAGTTTGAATG-CGTCCTGGATACCGGAGGAGAGTCAGTTAACCTCAGGAAAGCT 1868
|||||||||| ||| | |||| | || | ||||||||||| || ||| ||||||||||
Sbjct 1580 TCAACAAGTTCGAA-GACGTCTTAGACATCGGAGGAGAGTTAGCTAATAGCAGGAAAGCT 1638
Query 1869 GCTGAGGTCGTTTGGCTAGGTGTTGATCTCTATCACAAGTGGTTTGATGTGGATCTTCGG 1928
|| || || |||||| |||| ||||||||||| || || ||| | | |||||||||||
Sbjct 1639 GCAGAAGTAGTTTGGTTAGGAGTTGATCTCTACCATAAATGGCTCAACGTGGATCTTCGA 1698
Query 1929 AAACTATCAAAGCAACAAAG-AAATC-C-AGAAGAAACCCTTCGGGAGCTGATGGAAATC 1985
|||||||| ||| ||||||| ||| | | | ||||| ||| |||||| | || ||
Sbjct 1699 AAACTATCCAAGAAACAAAGCAAAACACCACAAGAAGTTCTTAAAGAGCTGGTAGATATA 1758
Query 1986 GCGAAGAAAGAGTTCT-CAGAGTCATGGCAGATGAACC-TGATGGTATGCATGAAGCACA 2043
|| ||||||||||| | ||||||||||| ||| |||| | || |||||||||| || |
Sbjct 1759 GCAAAGAAAGAGTT-TACAGAGTCATGGGAGAAAAACCGT-ATACTATGCATGAAACATA 1816
Query 2044 AGCCCTCTCACTGGCCCATCAAGACTCTAGCAGCCAACTCCATGTACCGAATCTGTCAAA 2103
|||||||||| |||||||||||||||| |||||| ||||| |||||||||||| | ||||
Sbjct 1817 AGCCCTCTCAATGGCCCATCAAGACTCAAGCAGCAAACTCAATGTACCGAATCAGCCAAA 1876
Query 2104 CAATTCT-ACT-AACTTACGAATCAAGAGACTATGGAA-CAGGGGA-AGCTCTGTTGAGA 2159
| || | | | || | ||||||||||| || || ||| ||| ||| | ||||||||| |
Sbjct 1877 CTCTTTTGA-TGAAGT-ACGAATCAAGAAAC-ATTGAAACAGAGGAGA-CTCTGTTGA-A 1931
Query 2160 A-A-GCTGGAAAGCACAATATCAGACATAGTGTCAGGTTGCTTTTGCAACGTAGCACAAG 2217
| | | |||| || | |||| |||||||| ||||| |||||||||||| ||||| |
Sbjct 1932 AGATG-TGGAGAGGATGGTATCGGACATAGTATCAGGATGCTTTTGCAACACGGCACAGG 1990
Query 2218 TGATATCCGTCAAGTGTTTGGTGTCAGCTGTAGAAGTAAGGGAAGAATCAGTAAGAGGAG 2277
| ||| | |||||||||||| |||| || ||||| || |||| || || |||| ||
Sbjct 1991 TAATAGGAATGAAGTGTTTGGTGACAGCAGTGGAAGTGAGAGAAGCTTCCGTGAGAGAAG 2050
Query 2278 CAGCTCTGCATCTGGGAAGAACAGAGAAGATTCTAGAGATCTTAGAGAGAAGA 2330
| || ||||| |||| |||||||||||||| || |||||| | || ||||||
Sbjct 2051 CGGCAATGCATTTGGGGAGAACAGAGAAGATACTTGAGATCGTGGACAGAAGA 2103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97015854015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5