BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47590.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915279 jgi|Araly1|915279|Al_scaffold_0008_30 1050 0.0
Ahg948141 jgi|Araly1|948141|scaffold_800028.1 695 0.0
> Ahg915279 jgi|Araly1|915279|Al_scaffold_0008_30
Length=792
Score = 1050 bits (568), Expect = 0.0
Identities = 729/804 (91%), Gaps = 21/804 (3%)
Strand=Plus/Plus
Query 54 ATGGGTGAGACAAAGGCAGATTTCAGGGACATGTCAAGAATTCCTAAAGTTCGAGAGGGG 113
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGAGCCAAAGGTAGAATTCAGGGACATGTCAAGAATTCCTAAAGTTCGAGAGGGA 60
Query 114 TTCTACGCGACGAACAATCAGTTTCAGAAAGCGGGTCCAAAGGGTTTCGTTCAAGTGAAG 173
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 61 TTCTACGCGACGAACAATCAGTTTCAGAAAGCGGGTCCAAAGGGTTTCATTGAAGTGAAG 120
Query 174 GTTCTGGAGAACGACAATCTCTACGTGCGTGTCGACTTGCCTGGTGTTCCAGACGACGCC 233
||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct 121 GTTCTGGAGAATGACAATCTCTATGTACGTGTCGACTTGCCTGGTGTTCCAGACGACGGC 180
Query 234 GTTCGCT-ACAGAGTTGACGCCGTGAGACAAAAGGTTGTCTTTTTCTCCGGTGAAACTCT 292
|||| | ||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 181 GTTC-ATCACAGAGTTGACGCGGTGAGACAAAAGGTTGTCTTTTTCTCCGGCGAGACTCT 239
Query 293 GAACAA-CGGCAAGGAAGG-TG--TGCGTCAGTACTCTGGAACCGCTGGGCTTGGCTGTG 348
||| | ||||||||| | | ||| ||||||||||||||||||| ||||||||||
Sbjct 240 ---CAATC-CCAAGGAAGGCGGCATTCGTGAGTACTCTGGAACCGCTGGTCTTGGCTGTG 295
Query 349 ACTGCTGCGAGATCACAGGCGT-G--GATGCCAAAATGAAAGATGGAGTTTTGAGGATGA 405
|||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 296 ACTGCTGCGAGATCACAGGCGTCGTCGATGCCAAAATGAAAGATGGAGTCTTGAGGATGA 355
Query 406 TTCTCACAAGGGTCAAGGTTGTGAGCAAGGCTCAAGACAACAACAACAACAAGTGTACTC 465
||||| |||||||||||||||||| ||||| | |||| |||||||||||||||| |
Sbjct 356 TTCTCTCAAGGGTCAAGGTTGTGAACAAGG----A-TCAAC-ACAACAACAAGTGTACCC 409
Query 466 TCACTGTGCCTCCTTT-TACAGGTCAATCCGGAATACGCTTGGAGGATCATCCGTGTCTG 524
|||||||||||||||| | |||| ||||||||||||||||||||||| || |||||||||
Sbjct 410 TCACTGTGCCTCCTTTCT-CAGGCCAATCCGGAATACGCTTGGAGGAACACCCGTGTCTG 468
Query 525 GTGTCTGGTCGCAAGGGAGCACTAATTGGGGTGACAAAAGCGGGAGGAGGGGCTCACTTT 584
||| |||||||||||||||| || ||||| | ||| |||||||||||||||| ||||
Sbjct 469 GTGAATGGTCGCAAGGGAGCATTATTTGGGAAGGCAACAGCGGGAGGAGGGGCTTTCTTT 528
Query 585 GCAGTGGACATGCCAGGTGTTAGTCCGGATGATGTGGAAGTGTATGCTGATGAAAAGGAA 644
||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||| |||
Sbjct 529 GCAGTGGACTTGCCAGGTGTTAGTCCGGATGATGTAGAAGTGTCTGCTAATGAAAATGAA 588
Query 645 ATCAGATTCAAAGCTGAGATCAAGGACGTGTATGAACACGATGAGAGCGGTCGAACCTAC 704
|||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 589 ATCAGATTCAGAGCTGAGATCAAGAACGTGTATGAGCACGATGAGAGCGGTCGAACCTAC 648
Query 705 CTCGGAAGCGTCCAAAGTCCTTTTCCCGCTTTAATTTCGAACAACACCATCGCTTGGGAT 764
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 649 CTCGGAAGCGTCCAGAGTCCTTTTCCCTCTTTAATTTCGAACAACACCATCGCTTGGGAT 708
Query 765 GCAGAATTTGGTGTTCTCAGGATTGCTGTCATACCTCCTGACGACATGACCACCATCAAC 824
|||||||||||||||||||||||||||||| || |||||| ||||||| ||| |||||||
Sbjct 709 GCAGAATTTGGTGTTCTCAGGATTGCTGTCGTATCTCCTGGCGACATGGCCATCATCAAC 768
Query 825 AACAAAAGAAACCCTATTGAATGA 848
|||||||||| ||||||||| |||
Sbjct 769 AACAAAAGAAGCCCTATTGAGTGA 792
> Ahg948141 jgi|Araly1|948141|scaffold_800028.1
Length=775
Score = 695 bits (376), Expect = 0.0
Identities = 612/719 (85%), Gaps = 43/719 (6%)
Strand=Plus/Plus
Query 109 AGGGGTTCTACGCGACGAACAATCAGTTTCAGA-AAGCGGGTCCAAAGGGTTTCGTTCAA 167
|||| ||||||||||||||||||||||| |||| || ||||||||||||||||| || ||
Sbjct 34 AGGGATTCTACGCGACGAACAATCAGTTCCAGACAA-CGGGTCCAAAGGGTTTCATTGAA 92
Query 168 GTGAAGGTTCTGGAGAACGACAATCTCTACGTGCGTGTCGACTTGCCTGGTGTTCCAGAC 227
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 93 GTGAAGGTTCTGGAGAACGACAATCTCTATGTGCGTGTCGACTTGCCTGGTGTTCCAGAC 152
Query 228 GACGCCGTTCGCTACAGAGTTGACGCCGTGAGACAAAAGGTTGTCTTTTTCTCCGGTGAA 287
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 153 GACGCCGTTCGCTACAGAGTTGACGCGGTGAGACAAAAGGTTGTGTTTTTCTCCGGTGAA 212
Query 288 ACTCTGAACAACGGCAAGGAAGG-TGTGCGTCAGTACTCTGGAACCGCTGGGCTTGGCTG 346
||||| ||| ||| |||||||| | ||||| |||||||||||||||| || ||||| ||
Sbjct 213 ACTCTCAACGACGATAAGGAAGGCT-TGCGTGAGTACTCTGGAACCGCCGGTCTTGGATG 271
Query 347 TGACTGCTGCGAGATCACAGGCGT-G--GATGCCAAAATGAAAGATGGAGTTTTGAGGAT 403
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 272 TGACTGCTGCGAGATCACAGGCGTCGTTGATGCCAAAATGAAAGATGGAGTTTTGAGGAT 331
Query 404 GATTCTCACAAGGGTCAAGGTTGTGAGCAAGGCTCAAGACAACAACAACAACAAGTGTAC 463
|||||| |||||||||||||| | | ||||| |||| | | |||||||||||||||
Sbjct 332 GATTCTTACAAGGGTCAAGGT-GA-A-CAAGGATCAA--C--C--CAACAACAAGTGTAC 382
Query 464 TCTCACTGTGCCTCCTTTTACAGGTCAATCCGGAA--TACGCTTGGAGGATCATCCGTGT 521
|||||||||||||||||| |||||||||||||||| || || |||||||||||| | |
Sbjct 383 TCTCACTGTGCCTCCTTTCACAGGTCAATCCGGAAGATAT-CT-GGAGGATCATCCATAT 440
Query 522 CTGGTGTCTGGTCGCAAGGGAGCACTAATTGGGGTGACAAAA-GCGGG-AGGAGGGGCTC 579
||||| ||||||||||||||| | ||||||| || || ||||| | |||| ||
Sbjct 441 GTGGTGAAAGGTCGCAAGGGAGCATTGTTTGGGGT-ACCAACCGCGGGGAT-AGGG-CTT 497
Query 580 -ACTTTGCAGTGGACATGCCAGGTGTTAGTCCGGATGATGTGGAAGTGTATGCTGATGAA 638
|||||||||| ||| ||||||||||| || ||||||||| |||||| |||| |||||
Sbjct 498 TACTTTGCAGTAGACTTGCCAGGTGTTTGTGGGGATGATGTACAAGTGTTTGCTCATGAA 557
Query 639 AAGGAAATCAGATTCAAAGCTGA-GATCAAGGACGTGTATGAACACGATGAGAGCGGTCG 697
|| |||||||||||| | | ||| | ||||| |||||| ||| |||||||||||| ||||
Sbjct 558 AATGAAATCAGATTCTATGGTGAAG-TCAAGAACGTGTGTGAGCACGATGAGAGCCGTCG 616
Query 698 AACCTACCTCGGAAG-CGTCCAA-AGTCCTT-TTCCCGC-TT-TA-----A-TTTCGAAC 746
|| |||| |||| || | || | |||||| |||||| || || | |||||| |
Sbjct 617 AATCTAC-TCGGGAGGCATC-ATGAGTCCTCCTTCCCGTATTCTACCTTCAGTTTCGAGC 674
Query 747 AACACCATCGCTTGGGATGCAGAATTTGGTGTTCTCAGGATTGCTG-TCATACCTCCTG 804
||| |||| ||||||||| ||||||||||||||||| ||||| || | | ||||||||
Sbjct 675 CACAACATCACTTGGGATGTAGAATTTGGTGTTCTCAAGATTGTTGCT-ACACCTCCTG 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5