BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G47600.1

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330675 jgi|Araly1|330675|fgenesh1_pm.C_scaffold_8000018           521    2e-147


> Ahg330675 jgi|Araly1|330675|fgenesh1_pm.C_scaffold_8000018
Length=390

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 330/354 (93%), Gaps = 0/354 (0%)
 Strand=Plus/Plus

Query  86   ATTCCGTCTCCAATAAGGAACCGATTTCAGAAAAGTGGGAGTCAAGCGGTGTACGAGGTG  145
            |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct  37   ATTCCGTCTCCAATGAGGAACCTATTTCAGAAAAGTGGGAGTCAAGCAGTGTACGAGATG  96

Query  146  ACAGAGACGAAGAAATCTTGCGTGACGAGAGTCGACATGCCTGGTTGTCCCGAGTCAGAT  205
             ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  97   TCAGAGACAAAGAAATCTTGCGTGATGAGAGTCGACATGCCTGGTTGTCCCGAGTCAGAT  156

Query  206  CTCACCTACTGGGTCGACGCCAACAACGTCCACTTCTTCGCCGACGAACCAGCAATGCCT  265
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| 
Sbjct  157  CTCACCTACTGGGTCGACGACAACAACGTCCACTTCTTCGCCGACGAACCAGCCATGCCC  216

Query  266  GAGTACGAAAACGCCGGACGCAAATACGGAGGCTCCATGATTTTCAACCCTGAGGCTTAC  325
            |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||
Sbjct  217  GAGTACGAAAACACCGGTCGCAAATACGGAGGCTCCATGGTTTTCAACCCTGAGTCTTAC  276

Query  326  GACGTCAAGAAAACTAAAGTGAAGCTTATCAACGGAGTGCTCTGGATCACCGTCCCTAAG  385
             |||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  277  AACGTCAAGAAAGTTAAGGTGAAGCTTATCAACGGAGTGCTCTGGATCACCGTCCCTAAG  336

Query  386  ATCCCAGGCAAAAACGCTTCCATTAATGTCAAGGAGAGGATCCTCCATTACTGA  439
            ||||||||||||||||| |||||| ||||||  ||||||||| ||| |||||||
Sbjct  337  ATCCCAGGCAAAAACGCCTCCATTGATGTCATCGAGAGGATCATCCGTTACTGA  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22053930442


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5