BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47610.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494214 jgi|Araly1|494214|fgenesh2_kg.8__30__AT5G47610.1 950 0.0
> Ahg494214 jgi|Araly1|494214|fgenesh2_kg.8__30__AT5G47610.1
Length=654
Score = 950 bits (514), Expect = 0.0
Identities = 577/607 (95%), Gaps = 5/607 (1%)
Strand=Plus/Plus
Query 12 AAGATGCGTTTGCTAGTAGCAGAAGCAGCTTCACCATTGTCCTCTGCTGCAACTCCAACA 71
||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||
Sbjct 1 AAGATGCGTTTGCTAGTAGAAGAAGTAGCTTCACCATTGCCCTCTGCTTCAACTCCAACA 60
Query 72 TGTAACTCTCATACTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAAT 131
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTAACTCTCATGCTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAAT 120
Query 132 GCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCT 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCT 180
Query 192 GCAATTCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCT 251
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCAATCCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCT 240
Query 252 GAAGCAGCTGCTTCATCCACTCCAACAACTCCTACACTTGTCTACTCCTCCGACCTTGAA 311
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GAAGCAGCTGCTTCATCCACTGCAACAACTCCTACGCTTGTCTACTCCTCCGACCTTGAA 300
Query 312 CTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTTGAACAAGGAGAAAGC 371
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 301 CTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTCGAACAAGGAGAGAGC 360
Query 372 ATTCAAGTGCTGGAGAAATGTCAGCATGGTTTCCATGTTAAGTGTATCCACAAATGGCTC 431
|| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCCAAGTGCTAGAGAAATGCCAACATGGTTTCCATGTTAAGTGTATCCACAAATGGCTC 420
Query 432 TCTACTCGCTCCTCCTGTCCCACTTGCAGAACTTCTATCTTCTCACAACACTCTGAAACT 491
||||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||
Sbjct 421 TCTACTCGCTCCTCCTGTCCCACTTGCCGGACTTCTATCTTCACACAACACTCGGAAACA 480
Query 492 CCTTCAAGCCACATCAATGCTTAGCTTCttt-tttt-AATCTTGT-TTTTCCAAAAGCTT 548
||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| ||||
Sbjct 481 CCTTCAAGCCAGATCAATGCTTAGCTTCTTTATTTTTAATCTTGTCTTTTCCAAA-GCTT 539
Query 549 TAGAGTTGTATCATGTTTTGCTTGAGATTA-CCCTGTATCTGCTCTGTATTATTAGGTAA 607
||||||||||||||||||||||||||| || |||||| |||| | |||||||||| ||||
Sbjct 540 TAGAGTTGTATCATGTTTTGCTTGAGACTAGCCCTGTTTCTGTTTTGTATTATTAAGTAA 599
Query 608 CGTAGAC 614
|||||||
Sbjct 600 CGTAGAC 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5