BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47620.4
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915275 jgi|Araly1|915275|Al_scaffold_0008_26 1749 0.0
> Ahg915275 jgi|Araly1|915275|Al_scaffold_0008_26
Length=1296
Score = 1749 bits (947), Expect = 0.0
Identities = 1033/1076 (96%), Gaps = 0/1076 (0%)
Strand=Plus/Plus
Query 633 TTGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCACGTAGTATTTAATAAAAGTAACA 692
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 221 TTGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCACGCAGTTTTTAACAAAAGTAACA 280
Query 693 GCAGCCTTCAGGGATCACCTGGCCCATCAAACTCCAAGAAGATCTTTGTGGGAGGTTTGG 752
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 281 GCAGCCTTCAGGGATCACCTGGCCCATCAACCACCAAGAAGATCTTTGTGGGAGGTTTGG 340
Query 753 CATCATCCGTGACAGAGGCTGAGTTCAAAAAGTATTTTGCTCAGTTTGGGATGATCACTG 812
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CTTCATCGGTGACTGAGGCTGAGTTCAAAAAGTATTTTGCTCAGTTTGGGATGATCACTG 400
Query 813 ATGTTGTGGTGATGTATGACCACAGAACCCAGCGGCCTAGAGGCTTTGGGTTCATTTCAT 872
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 401 ATGTTGTGGTGATGTATGACCACAGAACTCAGCGGCCGAGAGGCTTTGGGTTCATCTCAT 460
Query 873 ATGACTCTGAGGAAGCTGTTGACAAAGTACTGCAGAAGACATTCCACGAACTCAATGGTA 932
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 461 ATGACTCTGAGGACGCTGTTGACAAAGTGCTGCAGAAGACATTCCACGAACTCAATGGTA 520
Query 933 AGATGGTGGAGGTCAAACTGGCTGTTCCTAAGGATATGGCTCTCAACACAATGCGGAACC 992
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 521 AGATGGTGGAGGTCAAACTCGCTGTTCCTAAGGAAATGGCTCTCAACACAATGCGGAACC 580
Query 993 AAATGAATGTAAATAGCTTTGGCACTAGTAGAATCAGTTCATTACTGAATGAGTACACCC 1052
|||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||
Sbjct 581 AAATGAATGTAAATAGCTTTGGCAGTAGTAGAATCAGTACATTGCTGAACGAGTACACCC 640
Query 1053 AGGGATTCAGCCCGAGTCCAATCTCTGGTTATGGAGTGAAACCTGAAGTTAGGTACAGTC 1112
| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 641 AAGGATTCAGCCCGACTCCAATCTCTGGCTATGGAGTAAAACCTGAAGTTAGGTACAGTC 700
Query 1113 CAGCAGTAGGTAATAGGGGAGGATTCTCACCGTTTGGACATGGATACGGAATCGAGCTGA 1172
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 701 CAGCAGTAGGTAATAGGGGCGGATTCTCACCGTTTGGACATGGATACGGAATCGAGCTGA 760
Query 1173 ATTTTGAGCCAAACCAGACTCAGAACTACGGTTCTGGTTCCAGTGGAGGCTTTGGACGAC 1232
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 761 ATTTTGAGCCAAACCAGACTCAGAACTACGGTTCTGGTTCCAGCGGAGGCTTTGGACGAC 820
Query 1233 CCTTTAGCCCTGGATATGCTGCGAGTCTCGGCAGGTTCGGTAGCCAAATGGAGTCGGGAG 1292
||||||||||||| |||||||||||||||||||| | ||||||||| ||||| ||||||
Sbjct 821 CCTTTAGCCCTGGGTATGCTGCGAGTCTCGGCAGATACGGTAGCCAGATGGAAACGGGAG 880
Query 1293 GAGCTAGTGTTGGGAACGGTTCTGTCCTAAATGCAGCACCAAAGAACCATTTATGGGGAA 1352
|||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 881 GAGCTAGTGTCGGGAACGGTTCTGTGCTAAATGCAGCAACAAAGAACCATTTATGGGGAA 940
Query 1353 ATGGTGGTCTAGGTTACATGTCAAACTCTCCGATATCAAGAAGCAGCTTCAGTGGAAACT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 ATGGTGGTCTAGGTTACATGTCAAACTCTCCGATATCAAGAAGCAGCTTCAGTGGAAACT 1000
Query 1413 CTGGAATGTCTTCACTAGGCAGCATTGGTGACAACTGGGGAACAGTTGCACGTGCACGCA 1472
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 1001 CTGGAACGTCTTCACTAGGCAGCATTGGTGACAACTGGGGAACAGCTGCACGTGGACGTA 1060
Query 1473 GTAGCTACCACGGTGAGAGAGGAGGTGTAGGATTAGAAGCAATGAGAGGAGTTCATGTTG 1532
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GTAGCTACCCCGGTGAGAGAGGAGGTGTAGGATTAGAAGCAATGAGAGGAGTTCATGTTG 1120
Query 1533 GTGGTTACAGCAGCGGCTCAAGCATCTTGGAGGCAGACTCTCTGTACAGCGACTCGATGT 1592
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1121 GTGGTTACAGCAGTGGCTCAAGCAGCTTGGAGGCAGACTCTCTGTACAGCGACTCGATGT 1180
Query 1593 GGCTTTCGCTGCCTGCAAAGGCAGAGGAAGGATTGGGAATGGGACCATTGGACTTCATGT 1652
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1181 GGCTTTCTCTGCCTGCAAAGGCAGAGGAAGGATTGGGAATGGGAGCATTGGACTTCATGT 1240
Query 1653 CTAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGGAATTGCAGCTTAG 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CTAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGGAATTGCAGCTTAG 1296
Score = 377 bits (204), Expect = 1e-103
Identities = 216/222 (97%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 347 ATGGAAATGGAATCATGTAAGCTCTTCATCGGTGGTATATCTTGGGAAACCAGTGAAGAT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAATGGAATCATGTAAGCTCTTCATCGGTGGTATATCTTGGGAAACCAGTGAAGAT 60
Query 407 CGTCTTCGTGACTATTTTCACAGTTTTGGTGAGGTTTTAGAGGCTGTTATTATGAAGGAT 466
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTCTTCGTGAGTATTTTCACAGTTTTGGTGAGGTTTTAGAGGCTGTTATTATGAAGGAT 120
Query 467 CGTGCCACTGGCCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGATCCTAATGTTGCT 526
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CGTGCCACTGGTCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGATCCTATTGTTGCT 180
Query 527 GAAAGAGTCGTCTTGCTTAAACATATCATTGATGGTAAAATT 568
|| ||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GAGCGAGTCGTTTTGCTTAAACATATCATTGATGGTAAAATT 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77704099800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5