BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47630.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330673 jgi|Araly1|330673|fgenesh1_pm.C_scaffold_8000016 462 1e-129
> Ahg330673 jgi|Araly1|330673|fgenesh1_pm.C_scaffold_8000016
Length=294
Score = 462 bits (250), Expect = 1e-129
Identities = 278/291 (96%), Gaps = 3/291 (1%)
Strand=Plus/Plus
Query 144 AATTTCACATCAGAAGCAGC---TGCAGATGGAGGCCAAGATCAAATATTGAGCAGGGTT 200
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 4 AATTTCACATCAGAAGCAGCAGATGCAGATGGAGGCCAAGATCAAATCTTGAGCAGGGTT 63
Query 201 ATTGAACTGGTGAAGAAATACGACAAAACCAACACCTCTGAGGTTACTGAAAGGGCTGAT 260
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 64 ATTGAACTGGTGAAGAAATACGACAAAACCAACACCTCTAAGGTTACTGAAAGGGCTGAT 123
Query 261 TTTCAGAAAGATTTGTCGTTGGACAGCTTGGACAAGACGGAGCTAGTTATGGCTATTGAA 320
|||||||| ||||||||| |||||||||| |||||| ||||||||| ||||||||||||
Sbjct 124 TTTCAGAAGGATTTGTCGCTGGACAGCTTAGACAAGGTGGAGCTAGTCATGGCTATTGAA 183
Query 321 GAAGAGTTCTCGATTGAGATCCCTGATGAGAAAGCTGATAAGCTTACTTGTTGTGGTGAT 380
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 184 GAAGAGTTCTCGATTGAGATCCCTGATGAGAAAGCAGATAAGCTTACTTGTTGTGGTGAT 243
Query 381 GTTGCAACATACATACTCTCTGAAACTCCTACCAAAGCGTCTGAGTCCTGA 431
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GTTGCAACTTACATACTCTCTGAAACTCCTACCAAAGCGTCTGAGTCCTGA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5