BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47635.1
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330672 jgi|Araly1|330672|fgenesh1_pm.C_scaffold_8000015 701 0.0
> Ahg330672 jgi|Araly1|330672|fgenesh1_pm.C_scaffold_8000015
Length=492
Score = 701 bits (379), Expect = 0.0
Identities = 457/495 (92%), Gaps = 3/495 (1%)
Strand=Plus/Plus
Query 47 ATGGGAAGCTTCTTCATCATCCGTTGCTTCTTGTTACTCTCTTTCTTCTTGTTCACCGGA 106
|||||||||||||||||| ||| ||||||||||||| |||| ||||| || |||| |||
Sbjct 1 ATGGGAAGCTTCTTCATCCTCCTTTGCTTCTTGTTATTCTCCTTCTTTTTCTTCAACGGG 60
Query 107 GCATTTGGGAATAATTTATGGACCAGAACGGAAATGGTGGAGATGGCTGGCTACGGTGAA 166
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATTTGGGAAT-A--TATGGACCAGAACGGAAATGGTGGAGATGGCTGGCTACGGTGAA 117
Query 167 CAGAAACTCTCCTCTGTCGTGATCACCGGATCTCTTCTCTGCGACACTTCACGTCCTCAC 226
|||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 118 CAGAAACTATCCTCCGTCATGATCACCGGATCTCTTCTCTGCGACACTTCACGTCCTTAC 177
Query 227 CTTCACTCCATCCCTATCCCAGGTGCCACCGTTGCCATCAAGTGCCACACTGGATCCAAA 286
|||||||| ||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 178 CTTCACTCTGTCCCTATTCCAGGTGCCACTGTTGCAATCAAATGCCAAACTGGATCCAAA 237
Query 287 AGGAGGTCCAAATGGATTAAGGCTGTTACTGATGAATTGGGAGAGTTTGAAATCGATCTT 346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGGAGGTCCAAATGGATTAAGGCTGTTACTGATGAATTGGGAGAGTTTGAAATCGATCTC 297
Query 347 CCCTCCCAACTCCATGCGATTCCACACCTTGAAAACACTTGTTTCATCAAGCCAGTATAT 406
|||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 298 CCCTCCCAACTCCACGCGATTCCAGACCTCGAAAACAAATGTTTCATCAAGCCAGTATAT 357
Query 407 GTGCCTAGGCCCTATAGATGCTATAACACCTCTACCAATATACACAAACCTATCAAACTT 466
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||
Sbjct 358 GTGCCTAGGCCCTATAGATGCTATCACACCTCTACCAATATACACAAACGTATTAAACTA 417
Query 467 GTTTCCTCTACCAATGGTTTCCGTGTCTACACCTCAGGGAAAATCAGGTTACAGGGCCAC 526
||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 418 GTTTCCTCTACCAATGGCCTCCGAGTCTACACCTCAGGGAAGATCAGGTTACAGGGCCAC 477
Query 527 AGTTCGAGATCATAG 541
| ||| |||||||||
Sbjct 478 ACTTCAAGATCATAG 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28554064833
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5