BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47640.1
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948136 jgi|Araly1|948136|scaffold_800023.1 1002 0.0
Ahg494209 jgi|Araly1|494209|fgenesh2_kg.8__25__AT5G47650.1 132 6e-30
> Ahg948136 jgi|Araly1|948136|scaffold_800023.1
Length=616
Score = 1002 bits (542), Expect = 0.0
Identities = 596/621 (96%), Gaps = 7/621 (1%)
Strand=Plus/Plus
Query 168 ATTCCTTGTAATTTTCAGAAATGGGGGATTCCGACAGGGATTCCGGTGGAGGGCAAAACG 227
||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2 ATTTCTTGTAATTATCAGAAATGGGGGATTCCGACAGAGATTCCGGTGGAGGGCAAAACG 61
Query 228 GGAACAA-CCAGAACGGACAGTCCTCCTTGTCTCCAAGAGAGCAAGACAGGTTCTTGCCG 286
|||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GGAATAATCC-CAACGGACAGTCCTCCTTGTCTCCAAGAGAGCAAGACAGGTTCTTGCCG 120
Query 287 ATCGCTAACGTCAGCCGGATCATGAAGAAGGCCTTGCCCGCCAACGCCAAGATCTCTAAA 346
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 121 ATCGCTAACGTCAGCCGGATTATGAAGAAGGCCTTGCCCGCTAACGCCAAGATCTCCAAA 180
Query 347 GATGCCAAAGAGACGATGCAGGAGTGTGTCTCCGAGTTCATCAGCTTCGTCACCGGAGAA 406
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GATGCCAAAGAGACGATGCAGGAGTGTGTCTCCGAGTTCATAAGCTTCGTCACCGGAGAG 240
Query 407 GCATCTGATAAGTGTCAGAAGGAGAAGAGGAAGACGATCAACGGAGACGATTTGCTCTGG 466
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GCATCGGATAAGTGTCAGAAGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTCTGG 300
Query 467 GCTATGACTACTCTAGGTTTTGAGGATTATGTTGAGCCATTGAAAGTTTACTTGCAGAGG 526
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTATGACCACTCTAGGGTTTGAGGATTATGTTGAGCCATTGAAAGTTTACTTGCAGAGG 360
Query 527 TTTAGGGAGATCGAAGGGGAGAGGACTGGACTAGGGAGGCCACAGACTGGTGGTGAGGTC 586
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 361 TTTAGGGAGATCGAAGGGGAGAGGACTGGACTGGGGAGGCCACAGACTGGTGCTGAGGTC 420
Query 587 GGAGAGCATCAGAGAGATGCTGTCGGAGATGGCGGTGGGTTCTACGGTGGTGGTGGTGGG 646
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 421 GGAGAGCATCAGAGAGATGCTGTCGGCGATGGCGCTGGGTTCTAC---GGTGGTGGTGGG 477
Query 647 ATGCAGTATCACCAACATCATCAGTTTCTTCACCAGCAGAACCATATGTATGGAGCCACA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATGCAGTATCACCAACATCATCAGTTTCTTCACCAGCAGAACCATATGTATGGAGCCACA 537
Query 707 GGTGGCGGTAGCGACAGTGGAGGTGGAGCTGCCTCCGGTAGGACAAGGACTTAACAAAGA 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 538 GGTGGCGGTAGCGACAGTGGAGGTGGAGCTGCCTCCGGTAGGACAAGGACTTAA-AA-GA 595
Query 767 TTGGTGAAGTGGATCTCTCTC 787
|||||||||||||||||||||
Sbjct 596 TTGGTGAAGTGGATCTCTCTC 616
> Ahg494209 jgi|Araly1|494209|fgenesh2_kg.8__25__AT5G47650.1
Length=1052
Score = 132 bits (71), Expect = 6e-30
Identities = 74/75 (99%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 973 AATCTGCTTCATTGAATCTTGTATGTAACTAAAGCCATTGTATTGAATGCAAATGTTTTC 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 AATCTGCTTCATTGAATCTTGTATGTAACTAAAGCCATTGTATTGAATGCAAATGTTTTC 993
Query 1033 ATTTGGGATG-CTTT 1046
|||||||||| ||||
Sbjct 992 ATTTGGGATGTCTTT 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38923498257
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5