BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47660.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915270 jgi|Araly1|915270|Al_scaffold_0008_21 1770 0.0
> Ahg915270 jgi|Araly1|915270|Al_scaffold_0008_21
Length=1176
Score = 1770 bits (958), Expect = 0.0
Identities = 1123/1199 (94%), Gaps = 25/1199 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTTCTCGCCGGCGACTGTCGGAAACGAGTCGGCGACGACTTTGAGGAAGATATT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1 ATGGAACTTCTCGCCGGCGACTGTCGGAAACGAGTCGGCGACGACTTTGACGAAGATGTT 60
Query 61 AACCCATTCGATGGTTCGGACGGTGGTTGCGGGTGGATGTACGGTACCCGTCAAATGGGT 120
|||||||||||||| || || ||||||||||||||||||||||||| ||||| ||
Sbjct 61 AACCCATTCGATGGCTCAGATGGTGGTTGCGGGTGGATGTACGGTAGCCGTC-AA----- 114
Query 121 TCTAACGGAAACGACGACGCTTTGGCTACGCTCGCAGACTTGGCTTCGCCTCCTCAGAAA 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TC---GGGAAACGACGACGCTTTGGCTACGCTCGCAGACTTGGCTTCGCCTCCTCAGAAA 171
Query 181 TTGAAACCTATAAGGTGTGGCGTTAAGCTTCCGTCGTCGTCGGAGGATCGACATCCTCTT 240
||||||||||| |||||||||||||||| | || |||||||||||||||||||||||
Sbjct 172 TTGAAACCTATCAGGTGTGGCGTTAAGC-T---TC--CGTCGGAGGATCGACATCCTCTT 225
Query 241 GATATTCTCGCCGGAACCCTAGATAGGCTGCCGGAGATGGGTTTTGGCTGCTTCGAAGCT 300
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 226 GATATTCTCGCCGGAACCCTAGACAGACTGCCGGAGATGGGGTTTGGCTGCTTCGAAGCT 285
Query 301 CCTTTGGGATCGAAGATTGCTGACGTGGAGGAAAGTGGTCAATTGACTCGTGGGTTTTCA 360
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 286 CCTTTGGGATCCAAGATTGCTGACGTGGAGCAAAGTGGTCAATTGACTCGTGGGTTTTCA 345
Query 361 AAGGAAGAGGATGATTCTCTTCCTCCTCTTCAAATGGAGTTTCAAGCTCGAAATCGCATC 420
||||| || |||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 346 AAGGATGATGATGATTCTC-T--TCCGCTTCAAATGGAGTTTCAAGCTCGAAATCGCATC 402
Query 421 TCTTGGGATGGTCTCTCTCTCAGCTCCTCTGTTGATAGCAGCGATAGTGACTCATC-TCC 479
||||||||||||||||||||||||||||||||||||||| | |||| ||||| || ||
Sbjct 403 TCTTGGGATGGTCTCTCTCTCAGCTCCTCTGTTGATAGC-G--ATAGCGACTCTTCCTCG 459
Query 480 AGACGTTCGCAAGACCGTCACGGGTAAAAGAAAGCGGGAAACAAGGGTAAAGCTGGAGCA 539
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 460 -GACGTTCGCAAGACCGTCACTGGTAAAAGAAAGCGGGAAACAAGGGTAAAGCTGGAGCA 518
Query 540 TTTCTTGGAGAAGCTTG-TGGGGAGTATGATGAAGCGGCAGGAGAAGATGCATAATCAGT 598
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 519 TTTCTTGGAGAAG-TTGGTGGGGAGTATGATGAAGCGGCAGGAGAAGATGCATAACCAGT 577
Query 599 TGATTAATGTGATGGAGAAGATGGAAGTGGAGAGAATACGCCGTGAGGAAGCTTGGAGGC 658
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 578 TGATTAAGGTGATGGAGAAGATGGAAGGGGAGAGAATACGCCGTGAGGAAGCTTGGAGGC 637
Query 659 AACAGGAAACCGAGAGGATGACACAGAATGAAGAAGCACGGAAGCAAGAGATGGCACGCA 718
||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||
Sbjct 638 AACAGGAAATCGAGAGGATGATACAGAATGAAGAGGCACGGAAGCAAGAGTTGGCACGCA 697
Query 719 ACTTGTCTCTCATCTCTTTCATCAGAAGTGTTACTGGTGACGAGATCGAGATCCCTAAAC 778
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 698 GCTTGTCTCTCATCTCTTTCATCAGAAGTGTTATTGGTGACGAGATCGAGATCCCTAAAC 757
Query 779 AGTGTGAATTCCCGCAACCACTCCAGCAGATTCTTCCGGAACAATGTAAAGACGAGAAAT 838
| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 758 ACTTTGAATTCCCGCAACCACTCCAGCAGATTCTTCCCGAACAATGTAAAGACGAGAAAT 817
Query 839 GTGAATCCGCTCAGAGAGAAAGAGAGATAAAGTTTAGGTACTCAAGCGGCAGTGGCAGCA 898
||||| ||||||||| | |||||||||||||||||||||| |||||||||||||| || |
Sbjct 818 GTGAACCCGCTCAGACACAAAGAGAGATAAAGTTTAGGTATTCAAGCGGCAGTGGGAGTA 877
Query 899 GTGGTAGAAGGTGGCCGCAAGAGGAAGTGCAGGCATTGATAAGTTCGAGAAGCGATGTGG 958
| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 878 GCGGGAGAAGGTGGCCGCAAGAGGAAGTGCAGGCATTGATAAGTACAAGAAGCGATGTAG 937
Query 959 AAGAGAAGACGGGGATCAACAAGGGAGCGATTTGGGATGAGATATCAGCAAGAATGAAAG 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 938 AAGAGAAGACGGGGATCAACAAGGGAGCGATTTGGGATGAGATATCAGCAAGAATGAAGG 997
Query 1019 AAAGAGGGTACGAAAGATCTGCGAAAAAGTGTAAGGAGAAGTGGGAGAACATGAACAAGT 1078
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 998 AAAGAGGGTACGAAAGATCTGCTAAAAAGTGTAAGGAGAAGTGGGAGAACATGAACAAGT 1057
Query 1079 ACTATAGGAGAGTGACGGAAGGTGGGCAGAAACAGCCTGAGCACAGCAAGACTCGCTCAT 1138
| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1058 ATTACAGGAGAGTGACGGAAGGTGGGGGGAAACAGCCTGAGCACAGCAAGACTCGCTCAT 1117
Query 1139 ACTTTGAGAAACTTGGAAATTTTTACAAGACCATTTCCTCGGGAGAGAGGGAAAAATGA 1197
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1118 ACTTTGAGAAACTTGGAAGTTTTTACAAGACCAATTCCTCGGGAGAGAGGGAAAAATGA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5