BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47670.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494206 jgi|Araly1|494206|fgenesh2_kg.8__22__AT5G47670.2 1253 0.0
> Ahg494206 jgi|Araly1|494206|fgenesh2_kg.8__22__AT5G47670.2
Length=1061
Score = 1253 bits (678), Expect = 0.0
Identities = 791/841 (94%), Gaps = 25/841 (3%)
Strand=Plus/Plus
Query 104 AGGATTAGCAGCGAA-TTTTCTGATGGCAGAGGGCAGTATGCGTCCTCCAGAATTCAACC 162
||||||| |||| || |||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 237 AGGATTACCAGCCAACTTTT-TGATGGCAGAGGGCAGTATGCGTCCCCCAGAATTCAACC 295
Query 163 AGCCTAACAAAACCAGTAATGGTGGTGAGGAGGAGTGCACGGTGAGGGAGCAAGACAGGT 222
||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||
Sbjct 296 AGCCTAACAAAACCAGTAACGGTGGTGAAGACGAGTGCACGGTTAGGGAGCAAGACAGGT 355
Query 223 TCATGCCTATTGCCAACGTGATACGGATCATGCGGAGGATCTTACCTGCTCACGCCAAGA 282
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 TCATGCCTATTGCCAACGTGATACGGATCATGCGGAGGATCTTACCTGCCCACGCCAAGA 415
Query 283 TCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTTTCGGAGTACATCAGCTTCATAA 342
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 TCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTCTCGGAGTACATCAGCTTCATAA 475
Query 343 CAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACG 535
Query 403 TCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACTACATCGAACCCCTCACGTTGTACC 462
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 536 TCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACTACATTGAACCCCTCACACTGTACC 595
Query 463 TCCACCGCTACAGAGAGTTGGAAGGTGAAAGAGGGGTTAGCTGCAGTGCTGGGTCCGTTA 522
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct 596 TCCACCGCTACAGAGAGTTGGAGGGTGAAAGAGGGGTTAGCTGCGGTGCTGGATCCGTTA 655
Query 523 GTATGACCAACGGCTTGGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCT 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTATGACCAACGGCTTGGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCT 715
Query 583 ACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGGTTTG 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGGTTTG 775
Query 643 TTTTCAGTGGTAACGAACCTAATTCTAAGATGAGTGGTTCATCTTCAGGAGCAAGTGGCG 702
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 776 TTTTCAGTGGTAACGAACCTAATACTAAGATGAGTGGTTCATCTTCAGCAGCAAGTGGCG 835
Query 703 CCAGAGTTGAAGTATTTCCGACTCAACAACATAAGTACTGAGAACAATGGCTAATAACAT 762
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCAGAGTTGAAGTATTTCCGAGTCAACAACATAAGTACTGAGAACAATGGCTAATAACAT 895
Query 763 AGACAGCTGACAGAG------TCATAACTGTTAGTAGGTGCAAGCTGTAGCTTATGAATT 816
||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||
Sbjct 896 AGACAGCTGACAGAGCGAGAGTCATAACCGTTAGTAAGCGCAAGCTGTAGCTTATGAATT 955
Query 817 CAAGTTTAAGCGAAAACAATGCTGCTTTTTCTTTGTTTATTATCTATCTAGTTGAAAGAA 876
||||||||||||||||||||| |||||||| || ||| ||||||||||
Sbjct 956 CAAGTTTAAGCGAAAACAATGATGCTTTTT--------AT---CTA----GTTGAAAGAA 1000
Query 877 CATTGTGTTTTTCATCTGATCTGTCTTGTGGTAAA--GTATGTCAATAAAGCATTAGTTT 934
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1001 CATTGTGTTTTTCATCTGATCTGTCTTGTGGTAAAAAGTGTGTCAATAAAGCATTAGTTT 1060
Query 935 T 935
|
Sbjct 1061 T 1061
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 61 GCTACCGCAAGCTGTCCGTGAACAACACCACTCCTTCTCCA 101
||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GCTACCGCAAGCTGTCCGTGAACAACACCACTCCTTCACCA 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5