BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47680.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330667 jgi|Araly1|330667|fgenesh1_pm.C_scaffold_8000010 1589 0.0
> Ahg330667 jgi|Araly1|330667|fgenesh1_pm.C_scaffold_8000010
Length=1035
Score = 1589 bits (860), Expect = 0.0
Identities = 989/1047 (94%), Gaps = 26/1047 (2%)
Strand=Plus/Plus
Query 56 ATGGCGGCGGCGACGGGAAAT---GACGACAACGGCTGCTTCGAT---------AAACCA 103
||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGGCGGCGACGGGAAATGACGACGACAACGGCTGCTTCGATAACCAGCCAAAACCA 60
Query 104 GAATCTGAACCGGCACCGGTTAACGTTTCGCCTCCCCTGTCgaagaatgctcagaagaag 163
|||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 61 GAATCTGAACCGGCTCCGGTAAACCTTTCGCCTCCTCTGTCGAAGAATGCTCAGAAGAAG 120
Query 164 cagctgaagcagcaaagatacgaagcgaagaaagctgagaagaaggcacaggagaaggag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGCTGAAGCAGCAAAGATACGAAGCGAAGAAAGCTGAGAAGAAGGCACAGGAGAAGGAG 180
Query 224 cataagagaaaagaaggagagagaaagcttaaggaatgggaagaaaCCCTAGCGAACGCG 283
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGAAGAGGAAAGAAGGAGAGAGAAAGCTTAAGGAATGGGAAGAAACCCTAGCGAACGCG 240
Query 284 ACGGAGGAAGAGAGGCTGAAGCTTATTgagtcgaggaagagtctgcggaaggagagaatg 343
|||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||
Sbjct 241 ACGGAGGAAGAGAGGCTGCAGCTGATTGAGTCGAGGAAGAGTCTTCGGAAAGAGAGAATG 300
Query 344 gagaagagatcggaggagaaggagaagaagatagagaggCTGAATCAAGCTAAAGAAATA 403
|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct 301 GAGAAGAGATCGGAGGAGAAGGAGAAGAAGATGGAGAGGCTTAATCGAGCTAAAGAAATA 360
Query 404 GGTCAAAAGATCGTAGTAGATGTTGATTTTGCTCATCTCATGTCTGAGTCTGAGATCTCA 463
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GGTCAAAAGATCGTAGTAGATGTTGATTTTGCTCATCTTATGTCTGAGTCTGAGATCTCA 420
Query 464 AGCCTCGTTCAGCAGATTATGTATTGCTATGCGGTGAATGGGAGAAGCACTTCACCTTGT 523
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGCCTCGTTCAGCAGATTATGTATTGCTATGCTGTGAATGGGAGAAGCACTTCACCTTGT 480
Query 524 CATCTATGGCTTACAGGAGTCCAAGGGAAGATGAGTACTGAGCTTGACAAGCTTCCTGGT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CATCTATGGCTTACAGGAGTCCAAGGGAAGATGAGTACTGAGCTTGACAAGCTTCCTGGT 540
Query 584 TTTGAGAAATGGTTCATTGAAAAGGAAAGTAGGTGTTACATTGAAGCCATGGCTGATCAG 643
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 541 TTTGAGAAATGGTTCATTGAGAAGGAAAGTAAGTGTTACACTGAAGCCATGGCTGATCAG 600
Query 644 AAAGATAATTTGGTGTATCTTACGGCTGATTCTGAAACTGTTTTGGATGATCTTGACCCT 703
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 AAAGATAATTTGGTCTATCTTACGGCTGATTCTGAAACTGTTTTGGATGATCTTGA-CCT 659
Query 704 -AAGCATATCTACATTATCGGTGGCTTAGTGGATCGAAACCGGTTCAAAGGGATCACCAT 762
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAAGCATATCTACATTATTGGTGGCTTAGTGGATCGAAACCGGTTCAAAGGGATCACCAT 719
Query 763 GACCAAGGCTCAAGAACAAGGCATTAAAACAGCTAAGCTTCCCATAGGAGAGTATATGAA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GACCAAGGCTCAAGAACAAGGCATTAAAACAGCTAAGCTTCCCATAGGAGAGTATATGAA 779
Query 823 AATGTCAAGTTCTCAGGTTCTCACTGTGAACCAAGTTTTGGAGATACTCGTCAAGTTTCT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AATGTCAAGTTCTCAGGTTCTCACTGTGAACCAAGTTTTGGAGATACTCGTCAAGTTTCT 839
Query 883 GGAGACTAGGGACTGGAAAACAGCCTTCTTCACTGTGATTCCTCAGAGGAAAAGAACCGG 942
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 GGAGACTAGGGACTGGAAAACAGCCTTCTTCACTGTCATTCCTCAGAGGAAAAGAACCGG 899
Query 943 ACTTGATCCTGTTGATTGTTCGAAATTGGAACATATATCTGAAGAGCATCAGGAGAAAGA 1002
|||||||||||||||||||||||||||||||| | | ||||||||||||| |||| ||||
Sbjct 900 ACTTGATCCTGTTGATTGTTCGAAATTGGAACCTCTTTCTGAAGAGCATCTGGAGGAAGA 959
Query 1003 TACTGAGGCAAACGAGAGTGCAGACAAACATGATCTTCTGGAGAGGAAAAAGGTATGCGT 1062
||||||| ||||||||| | | |||||||||||||||||||||||| |
Sbjct 960 GGCTGAGGCGGACGAGAGTG-A--------T---CTTCTGGAGAGGAAAAAGGTATGCAT 1007
Query 1063 TGAAGTTCCTTTGGAAAGTAGTAGCTA 1089
|||||||||| ||||||||||||||||
Sbjct 1008 TGAAGTTCCTCTGGAAAGTAGTAGCTA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5