BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G47700.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330665 jgi|Araly1|330665|fgenesh1_pm.C_scaffold_8000008           532    9e-151
  Ahg311324 jgi|Araly1|311324|fgenesh1_pm.C_scaffold_1000104           521    2e-147


> Ahg330665 jgi|Araly1|330665|fgenesh1_pm.C_scaffold_8000008
Length=336

 Score =  532 bits (288),  Expect = 9e-151
 Identities = 325/342 (95%), Gaps = 6/342 (2%)
 Strand=Plus/Plus

Query  118  ATGTCGACAGTGGGAGAGCTCGCTTGCAGCTACGCTGTTATGATCCTCGAGGATGAGGGT  177
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT  60

Query  178  ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACCATTGAG  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACTATTGAG  120

Query  238  TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTCATC  297
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTAATC  180

Query  298  ATGAACGTtggtgctggtggtggaggtggtgcgcctgttgcagctgctgctcctgctgct  357
            |||||||||||||||||||||||||||||||| || ||||| |||||||||   ||||| 
Sbjct  181  ATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCTCCCGTTGCTGCTGCTGCT---GCTGC-  236

Query  358  ggcggtggtgctgccgctgctgctcctgctgcCGAGGAGAAGAAGAAGGACGAACCAGCA  417
              ||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct  237  --CGGTGGTGCTGCCTCAGCTGCTCCTGCTGCAGAGGAGAAGAAGAAGGACGAACCAGCA  294

Query  418  GAAGAGAGTGATGGAGATTTGGGTTTTGGCTTGTTCGATTAA  459
            |||||||||||||||||||||||||| |||||||||||||||
Sbjct  295  GAAGAGAGTGATGGAGATTTGGGTTTCGGCTTGTTCGATTAA  336


> Ahg311324 jgi|Araly1|311324|fgenesh1_pm.C_scaffold_1000104
Length=342

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 322/342 (94%), Gaps = 0/342 (0%)
 Strand=Plus/Plus

Query  118  ATGTCGACAGTGGGAGAGCTCGCTTGCAGCTACGCTGTTATGATCCTCGAGGATGAGGGT  177
            ||||||||||| || ||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct  1    ATGTCGACAGTTGGTGAGCTTGCTTGCAGTTACGCTGTTATGATCCTCGAAGACGAGGGT  60

Query  178  ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACCATTGAG  237
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||||
Sbjct  61   ATTGCTATTACGGCTGACAAAATCGCGACTTTGGTGAAAGCTGCTGGTGTTAGTATTGAG  120

Query  238  TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTCATC  297
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  121  TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATC  180

Query  298  ATGAACGTtggtgctggtggtggaggtggtgcgcctgttgcagctgctgctcctgctgct  357
            |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct  181  ATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCTCCGGTTGCAGCTGCTGCTCCAGCTGCT  240

Query  358  ggcggtggtgctgccgctgctgctcctgctgcCGAGGAGAAGAAGAAGGACGAACCAGCA  417
            |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  GGCGGTGGTGCTGCAGCAGCTGCTCCTGCTGCCGAGGAGAAGAAGAAGGATGAACCAGCA  300

Query  418  GAAGAGAGTGATGGAGATTTGGGTTTTGGCTTGTTCGATTAA  459
            ||||||||||||||||||||||| || |||||||||||||||
Sbjct  301  GAAGAGAGTGATGGAGATTTGGGATTCGGCTTGTTCGATTAA  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5