BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G47710.1

Length=828
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330664 jgi|Araly1|330664|fgenesh1_pm.C_scaffold_8000007           837    0.0  


> Ahg330664 jgi|Araly1|330664|fgenesh1_pm.C_scaffold_8000007
Length=501

 Score =  837 bits (453),  Expect = 0.0
 Identities = 485/501 (97%), Gaps = 0/501 (0%)
 Strand=Plus/Plus

Query  177  ATGGGCGAGCCACTAGGACTGCTCCAGGTGACTGTTATTCAAGGAAAGAAACTGGTGATC  236
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGGGAGCCACTAGGACTGCTCCAGGTGACTGTTATTCAAGGAAAGAAACTGGTGATC  60

Query  237  CGAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGTCAGCGAAG  296
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  61   CGAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGTCAGCCAAG  120

Query  297  ACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAGGAACTGAACTTTACTCTG  356
            |||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||
Sbjct  121  ACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGGATGAGGAACTCAGCTTTACACTG  180

Query  357  AAAGATCCTGCAGCAGTTCTCGCATTGGAAGTGTTTGATAAAGATAGGTTCAAGGCAGAT  416
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  181  AAAGATCCTACAGCAGTTCTCGCATTGGAAGTGTTTGATAAAGATAGGTTCAAGGCGGAT  240

Query  417  GACAAGATGGGCCATGCCTCTCTCAGCCTTCAACCGCTTATCTCAGTTGCCAGACTAAGA  476
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  GACAAGATGGGTCATGCCTCTCTCAGCCTTCAACCGCTTATCTCAGTTGCTAGACTAAGA  300

Query  477  CACGTAGTCCGCGTGTCCTCTGGTGAGACAACGCTTAGGAAAGTATTACCGGATCCAGAG  536
            || ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  301  CATGTAGTCCGCGTTTCCTCTGGCGAGACAACGCTTAGGAAAGTGTTACCGGATCCAGAG  360

Query  537  AACTGCGTATCTCGAGAGAGCACAATCAGTTGCATAGACGGAGAGGTGGTGCAGAGTGTG  596
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  361  AACTGCGTATCTCGGGAGAGCACAATCAGTTGCATAGACGGAGAGGTGGTGCAGAGCGTG  420

Query  597  TGGCTGAGGCTGTGTGCTGTTGAATCGGGTGAGATTGAGTTGAAGATAAAGTTGATTGAT  656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TGGCTGAGGCTGTGTGCTGTTGAATCGGGTGAGATTGAGTTGAAGATAAAGTTGATTGAT  480

Query  657  CCTCCTGGAACAAACAAGTAG  677
            |||||||||||||||||||||
Sbjct  481  CCTCCTGGAACAAACAAGTAG  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30612702351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5