BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47730.1
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948127 jgi|Araly1|948127|scaffold_800014.1 1759 0.0
> Ahg948127 jgi|Araly1|948127|scaffold_800014.1
Length=1067
Score = 1759 bits (952), Expect = 0.0
Identities = 1029/1067 (96%), Gaps = 1/1067 (0%)
Strand=Plus/Plus
Query 465 AGAGGAAG-GAGTCAAAACAATGGGGATCGTTTCAGAAGAAGCCATTGATGAATTCCAAG 523
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGGAAGTGAGCCAAAACAATGGGGATCGTTTCAGAAGAAGCCATTGATGAATTCCAAG 60
Query 524 AGCTGATGGATCAAGTTGAGGAGCCACTGAAGAAAACTTATGAGAGAGTCCATCAGGGAT 583
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 61 AGCTGATGGATCAAGTTGAGGAGCCATTGAAGCAAACATATGAGAGAGTCCATCAGGGAT 120
Query 584 ATCTAAGGGAGAATTTGGGTCGTTTTCTGAAAGCACGAGACTGGAACGTATGCAAAGCTC 643
|||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 121 ATCTGAGAGAGAATTTGGGTCGTTTTCTGAAAGCACGAGACTGGAGCCTATGCAAAGCTC 180
Query 644 ACACAATGCTGGTTGAGTGTTTGCGTTGGAGGGTGGATAATGAAATTGACAGTATCCTAT 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACACAATGCTGGTTGAGTGTTTGCGTTGGAGGGTGGATAATGAAATTGACAGTATCCTAT 240
Query 704 CTAAACCAATTGTTCCTACTGAGTTGTATAGGGATGTACGAGATTCTCAACTCATAGGAA 763
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CCAAACCCATTGTTCCTACTGAGTTGTATAGGGACGTACGAGATTCTCAACTCATAGGAA 300
Query 764 TGTCAGGTTACACCAAAGAGGGCTTGCCGGTCTTTGCTATTGGCGTCGGCCTCAGCACAT 823
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 TGTCAGGTTACACCAAAGAGGGCTTGCCTGTCTTTGCTATTGGCGTCGGCCTCAGCACAT 360
Query 824 TTGACAAAGCTTCTGTTCACTACTATGTCCAATCTCACATACAAATCAATGAATATAGAG 883
| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 361 TCGACAAAGCTTCTGTTCACTACTATGTCCAGTCCCACATACAAATCAATGAATATAGGG 420
Query 884 ACCGTGTTTTACTGCCTTCTATTTCTAAGAAGAATGGGAGGCCAATCACCACCTGCGTCA 943
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 421 ACCGTGTATTACTGCCTTCTATCTCTAAGAAGAATGGGCGGCCAATCACCACCTGCGTCA 480
Query 944 AGGTTCTAGACATGACGGGGTTGAAGCTTTCAGCTCTAAGCCAAATCAAGTTAGTGACTA 1003
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 AGGTTCTAGACATGACGGGGTTGAAGCTTTCAGCGCTAAGCCAAATCAAGTTAGTGACTA 540
Query 1004 TCATATCGACCATTGATGATCTCAACTATCCAGAGAAGACAAACACGTACTATGTTGTGA 1063
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 TCATATCGACCATCGATGATCTCAACTATCCAGAGAAGACAAACACTTACTATGTTGTGA 600
Query 1064 ACGCTCCATATATATTTTCCGCATGTTGGAAGGTTGTAAAACCTCTTTTACAAGAGAGGA 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGCTCCATATATATTTTCCGCATGTTGGAAGGTTGTAAAACCTCTTTTACAAGAGAGGA 660
Query 1124 CAAGGAAAAAAGTTCATGTCTTATCCGGTTGCGGAAGGGATGAATTATTGAAGATTATGG 1183
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 CACGGAAAAAAGTTCATGTCTTATCCGGTTGCGGAAAGGATGAATTATTGAAGATTATGG 720
Query 1184 ACTTCACATCCCTGCCACATTTCTGTAGAAGTGGAAGCTCTGGGTCATCTCACCACACTC 1243
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACTTCACATCCCTCCCACATTTCTGTAGAAGTGGAAGCTCTGGGTCATCTCACCACACTC 780
Query 1244 AGAGCGCAAATTGTTTTTCTATCAATCATCCCTTCCATCAACAGCTATACAACTATGTGA 1303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAGCGCAAATTGTTTTTCTATCGATCATCCCTTCCATCAACAGCTATACAACTATGTGA 840
Query 1304 AGCACCATTATGAAACCCAAGGACAAGCAGAACCTGCAAAGCAAGGATCATTCCACGTGG 1363
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 AGCACCATTACGAAACCCGGGGACAAGCAGAACCTGCAAAGCAAGGATCGTTCCACGTGG 900
Query 1364 GTTTTCCTGAGCCTGAAGCTGAACGTTGTGTGATAGCCAAAACCATAGAATCGGAGCTGC 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 GTTTTCCTGAGCCTGAAGCTGAACGTTGTGTGATAGCCAAAACCATAGAATCGGAACTGC 960
Query 1424 ACAAGTTTGAGAACCGCAACGGTCTGGCCGTGTCCATTGATGACAGAAAATCCAGTCATG 1483
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 961 ACAAGTTTGAGAACCGCAACGGTCTGGCCATGTCCATTGATGACAGAAAAGCCAGTCATG 1020
Query 1484 AAACACTGGCAAATGGTGACCTCTGAATGCTTCTGAGGGAATTCCTT 1530
|||| | |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1021 AAACGCAGGCAGATGATGACCTCTGAATGCTTCTGAGGGAATTCCTT 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69514697125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5