BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47740.2
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494188 jgi|Araly1|494188|fgenesh2_kg.8__4__AT5G47740.1 1332 0.0
> Ahg494188 jgi|Araly1|494188|fgenesh2_kg.8__4__AT5G47740.1
Length=934
Score = 1332 bits (721), Expect = 0.0
Identities = 892/967 (92%), Gaps = 41/967 (4%)
Strand=Plus/Plus
Query 1 AATGTCTTGAAAAGTTCAGGCTTTCATAAACCTCACACGCAAAAA-ACACCA-AA--ATC 56
|||||||||||||||||||||||||| |||||||||||||||||| |||||| || |||
Sbjct 1 AATGTCTTGAAAAGTTCAGGCTTTCACAAACCTCACACGCAAAAATACACCACAATCATC 60
Query 57 AGGTCATACATTCCACAAGCACATGTTCATTGCATATAAATATTAAAAGAAAGGAGTACG 116
|||||||||||||||||||||||||| |||||| || ||| | | |
Sbjct 61 AGGTCATACATTCCACAAGCACATGTAGATTGCACAT--ATA-T----------A-T--- 103
Query 117 GTTTGATGAGGCAGAGAGGGCAAAAGAAGAGCaaaaaaaGTCAACGAGAAGAAAACTTGA 176
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 104 -TTTGATGCGGCAGAGAGGGCAAAAGAAGAGC-AAAAAAGTCAACGAGAAGAAAACTTGA 161
Query 177 AATGCAACggaggagcaatgagatagaggaggaggaggaacaagaagatggaaggagaag 236
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 162 AATGCAACGGAGGAGCAATGAGATAGAGGAGGAGGA-G-----GAAGATGGAAGGAGAGG 215
Query 237 actggagagcgtgagagagagCCAGTTGGAAGGGAGAAGCAGCGGAACAGTGTCCATGAA 296
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 216 ACTTGAGAGCGTGAGAGAGAGCCAGTTGGAAGGGAGAAGCAGCGGAACAGTGTCGATGAA 275
Query 297 CGGAGAGGACAACGTCTATGTTGGGGTTGGGAAAGGAGACTCAAGTATGGAGGCATTGCG 356
||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 276 TGGAGAGGACTCCGTCTATGTTGGGGTTGGGAAAGGAGACTCGAGCATGGAGGCATTGCG 335
Query 357 TTGGGCTATTGACAACCTAATGACTTCTTCTTCTACTCTTCTTTTCCTCATCCATGTCTT 416
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 336 TTGGGCTATTGACAATCTTATGACTTCTTCTTCTACTCTTCTTTTCCTCATCCATGTCTT 395
Query 417 CCCTGAGACTCGCTTCATTCCTTACCCCTTGGGGAGGATAACGAGGGAGAGAGCAAGTCA 476
|||||||||||||||||||||||| |||||||| ||| | |||||||||| |||||||||
Sbjct 396 CCCTGAGACTCGCTTCATTCCTTATCCCTTGGGAAGGCTGACGAGGGAGAAAGCAAGTCA 455
Query 477 AGAACAAGTAGAAAGCTTTATGTCTCAGGAAAGGGAAAAGAGAAGAACTCTGTTGCTCAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 AGAACAAGTAGAAAGCTTTATGTCTCAGGAAAGGGAAAAGAGAAGAACTCTGTTGCTCAA 515
Query 537 GTTCCTTCATGCCTGCTCTGCTTCTAAGGAACAGGTGAAGGTGGAGACAATACTGGTTGA 596
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 516 GTTCCTTCATGCCTGCTCTGCTTCCAAGG------TGAAGGTGGAGACAATACTGGTTGA 569
Query 597 GAGTGACTCGGTCGCTAAGGCTGTACAAGACCTCATTACCATTCTTAACATTAGGAAGCT 656
||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 570 GAGTGACTCCGTGGCTAAGGCTGTACAAGACCTCATTACCATTCTTAACATTAAGAAGCT 629
Query 657 TGTTCTTGGGATCGACAAGTCTAATGCTAGGAAAGCATCCACAATGAAAGGAAACAGTGT 716
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 630 TGTTCTTGGGATCGACAAGTCTAATGCTAGGAAAGCAACGACGATGAAAGGAAACAGTGT 689
Query 717 CCCTGAACTGATAATGAGGAGCTCCGCAGCAGACGTGTGTGAGGTTAAAGTCATATGCCA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CCCTGAACTGATAATGAGGAGCTCCGCAGCAGACGTGTGTGAGGTTAAAGTCATATGCCA 749
Query 777 AGGGAAA-GAGATAAATATGGAGCAGACGATGATGGAGAGCAGCCCAGCTAAGTCCCCAA 835
|||||| |||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 750 -GGGAAAAGAGATAAATATGGAGCAGGCGATGATCGCGAGCAGCCCAGCTAAGTCCCCAA 808
Query 836 TAGTGCAGCGGCAAAAGAAAGATCAACCTGTTGACCCTTTTGCTTGCATTTGCTTTATCA 895
||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TAGCACATCGACAAAAGAAAGATCAACCTGTTGACCCTTTTGCTTGCATTTGCTTTATCA 868
Query 896 GTAAGCCCAAAACTAACAGATAAT---GTAAAGAGAGATCAAAGATGCAGAGACAATACA 952
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 869 GTAAGCCCAAAACTAACAGATAATAATGTAAAGAGAGATCAA-GATGCAGAGACAATACA 927
Query 953 TTTGATG 959
|||||||
Sbjct 928 TTTGATG 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37551073245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5