BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47750.1
Length=2277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494187 jgi|Araly1|494187|fgenesh2_kg.8__3__AT5G47750.1 3347 0.0
> Ahg494187 jgi|Araly1|494187|fgenesh2_kg.8__3__AT5G47750.1
Length=2191
Score = 3347 bits (1812), Expect = 0.0
Identities = 2034/2141 (95%), Gaps = 16/2141 (1%)
Strand=Plus/Plus
Query 151 TGCATGTAATTGAAGCAGCAACCAT-T-T-C--TACTTTTCGAATCTTCTCTGCTTCAAT 205
|||||||||||| |||||||| ||| | | | ||||||||||||||||||||| ||||
Sbjct 52 TGCATGTAATTGTAGCAGCAAGCATATATACTGTACTTTTCGAATCTTCTCTGCGCCAAT 111
Query 206 CCACACCCAAGGGTTTCAAGGAATATGGGTCTTTCCCGTTAGCTAAAGATAAT-TAATTT 264
|||||||||||||||| |||||| ||| ||||||||||||||||||||||||| | ||||
Sbjct 112 CCACACCCAAGGGTTTGAAGGAAGATGTGTCTTTCCCGTTAGCTAAAGATAATCT-ATTT 170
Query 265 TGTGT-CCGATGGCGTCCACTCGTAAACCCAGTGGTCATGGAGCTGAAGTCGAAGCTCAG 323
||||| || |||||||| |||||||||||||||| |||| ||||||| |||||||||||
Sbjct 171 TGTGTCCCAATGGCGTCTACTCGTAAACCCAGTGCTCATAAAGCTGAAATCGAAGCTCAG 230
Query 324 AAGCGCTCCTCTTCGAATAGTAG---TACTAAGTCAGCCAAAGCCGAGACTTTTGAGCCG 380
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 231 AAGCGCTCCTCTTCAAATAGTAGTAATACTAAGTCAGCCAAAGCCGAGATTTTTGAGCCG 290
Query 381 ATGCAATTACAAAGATCAGTAACAAACCCAAGAGCTGTTGGAATTCCGGAGAGTAAACGG 440
| ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 291 ACGCAGTTACAAAGATCACTAACAAATCCAAGTGCTGTTGGAATTCCGGAGAGTAAACGG 350
Query 441 TTGCCAGAGTCTTTTAGGAAGCGATCTAGCGACCCGGCTGTTTGTAAACCCGATTTCAGC 500
||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 351 TTGCCAGAGTCGTTTAAGAAGCGATCTAGTGACCCAGCTGTTTGTAAACCCGATTTTAGC 410
Query 501 TCCCTATCCACTGTTCTTGAGCATGTAGATTCATTGACCATTGATGAAAAGAAAACATCT 560
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCACTATCCACCGTTCTTGAGCATGTAGATTCATTGACCATTGATGAAAAGAAAACATCT 470
Query 561 GGCTTTGGCAGCGTCAAGACCAGCTCTGCTTCAGCCAAATTGAGTGATGGTACGAGCAGT 620
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 471 GGCTTTGGCAGTGTCAAGACCAGCTCTGCTTCAGCCAAAATGAGTGATGGTACCAGCAGT 530
Query 621 CTTGGCAAGACTAGTGGAAGTGCCAAGCTAAGTGGCCGCCTTGATTTCATGGAGAGTGGC 680
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTTGGCAAGACAAGTGGTAGTGCCAAGCTAAGTGGCCGCCTTGATTTCATGGAGAGTGGC 590
Query 681 AAGAGCAGTATCTGCAGAGGAAGCACAAGCAGTGATGTGAGTGACGAGAGTAGCTGCAGC 740
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 591 AAGAGCAGTATCTGCAGAGGAAGCACAAGCAGTGATGTCAGTGACGAGAGTAGTTGCAGC 650
Query 741 AGCTTTAGTAGCACTGTCAACAAACCCCACAAGGCCAATGACTTAAGATGGGAAGCAATC 800
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 651 AGCTTTAGCAGCACTGTCAACAAACCCCACAAGGCCAATGACTTGAGATGGGAAGCAATC 710
Query 801 CAGGCTGTTAGGGTTCGTGATGGGCTTTTAGGTCTTAGTCATTTCAGGCTCCTTAAGCGG 860
||||||||||||||||| |||||| |||||||||| || |||||||||||||||||| ||
Sbjct 711 CAGGCTGTTAGGGTTCGGGATGGGGTTTTAGGTCTGAGCCATTTCAGGCTCCTTAAGAGG 770
Query 861 TTAGGCTGCGGGGACATCGGGAGTGTTTATCTCTCTGAGCTGAGCGGGACTAAGTGTTAC 920
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 771 CTAGGCTGCGGGGACATTGGGAGTGTTTATCTCTCTGAGCTTAGCGGGACTAAGTGTTAC 830
Query 921 TTTGCTATGAAGGTTATGGACAAGACATCCCTTGCCAGTCGCAAGAAGCTTCTCCGAGCT 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TTTGCTATGAAGGTTATGGACAAGACATCCCTTGCCAGTCGCAAGAAGCTTCTCCGAGCT 890
Query 981 CAGACTGAAAGAGAGATTCTCCAGTCTTTGGATCATCCATTTCTCCCTACCCTCTACACT 1040
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 891 CAGACCGAAAGAGAGATTCTCCAGTCTTTGGATCATCCGTTTCTCCCTACCCTCTACACT 950
Query 1041 CACTTTGAGACTGAGAAATTCTCATGCCTGGTGATGGAATTCTGTCCCGGAGGAGATTTG 1100
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 951 CACTTTGAGACTGAGAAGTTCTCGTGCCTGGTGATGGAATTCTGTCCCGGAGGAGATTTG 1010
Query 1101 CATACTCTCAGGCAACGCCAGCCGGGGAAACATTTTTCTGAGCAAGCGGTAAAATTTTAC 1160
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1011 CATACTCTCAGGCAACGCCAGCCGGGGAAGCATTTTTCTGAGCAAGCCGTAAAATTTTAC 1070
Query 1161 ATAGCAGAGTCATTGTTAGCTTTGGAATACCTGCACATGCTTGGGATTGTGTATCGAGAT 1220
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1071 ATAGCAGAGTCATTGCTAGCTTTGGAATACCTGCACATGCTTGGGATTGTGTATCGCGAT 1130
Query 1221 CTTAAGCCTGAAAACGTTCTAGTTCGAGAAGACGGACATATAATGCTCTCTGATTTTGAC 1280
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 CTTAAGCCTGAAAACGTTCTAGTTCGGGAAGACGGACATATAATGCTCTCTGATTTTGAC 1190
Query 1281 CTTTCTCTCCGATGTCTTGTCAGCCCGACTCTAGTGAAATCTGCCGCCATCGAGTCAGAT 1340
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1191 CTTTCACTCCGCTGTCTTGTCAGCCCCACTCTAGTGAAATCTGCCGCCATCGAGTCAGAT 1250
Query 1341 CCTTTACGGAAAAACGTTTACTGTGTGCAGCCCGCTTGCATTGAGCCCTCCTGCATTCAA 1400
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CCATTACGAAAAAACGTTTACTGTGTGCAGCCCGCTTGCATTGAGCCCTCCTGCATTCAA 1310
Query 1401 CCGTCTTGCACCGTCCCCACCACTTGCTTCTCCCCACGTTTGTTCTCAAGCAAATCTAAG 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CCGTCTTGCACCGTCCCCACCACTTGCTTCTCCCCACGTTTGTTCTCAAGCAAATCTAAG 1370
Query 1461 AAGGACCGTAAACCCAAGAATGACACCGCAAATCAAGTTAGGCCATTGCCAGAGCTGGTA 1520
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1371 AAGGACCGTAAACCCAAGAATGACACCGCGAATCAAGTTAGGCCGTTGCCAGAGCTGGTA 1430
Query 1521 GCCGAGCCAACCGATGCACGTTCCATGTCATTTGTGGGCACACACGAGTACTTGGCCCCA 1580
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1431 GCCGAGCCAACCGATGCACGGTCCATGTCATTTGTGGGCACACACGAGTACTTAGCCCCA 1490
Query 1581 GAGATCATCAAAGGCGAAGGGCATGGCAGTGCAGTGGATTGGTGGACTTTTGGGATATTC 1640
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1491 GAGATCATCAAAGGCGAAGGCCATGGCAGTGCAGTGGATTGGTGGACTTTTGGGATCTTC 1550
Query 1641 CTTTACGAGCTTCTCTTTGGGAGAACGCCCTTCAAGGGCTCAGGAAACCGACAAACACTG 1700
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1551 CTTTACGAGCTTCTCTTTGGGAGAACGCCTTTCAAGGGCTCAGGAAACCGACAAACACTG 1610
Query 1701 TTCAATGTGGTGGGTCAGCCTCTGCGGTTCCCAGAAACGCCTGTGGTGAGTTTTGCAGCG 1760
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1611 TTCAATGTGGTGGGTCAGCCTCTGCGGTTCCCAGAAACACCTGTGGTGAGTTTTGCAGCG 1670
Query 1761 AGAGACCTCATCCGGGGCTTGCTCATGAAGGAGCCGCAGCAGCGGCTGGGGTTCAAACGG 1820
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1671 AGAGACCTCATCCGGGGCTTGCTCATGAAGGAGCCGCAACAGCGGCTGGGGTTCAAACGG 1730
Query 1821 GGAGCCACTGAGGTTAAGCAGCACCCTTTCTTCGAAGGTGTGAACTGGGCTTTGATTCGG 1880
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1731 GGAGCCACTGAGGTTAAGCAGCACCCGTTCTTCGAAGGTGTGAACTGGGCTTTGATTCGG 1790
Query 1881 TGTGCGACTCCCCCGGAAATACCAAAGCCGGTTGAGCTGGAAAAAGGAGCTGTGAGTGTT 1940
||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 1791 TGTGCGACTCCACCGGAAATCCCAAAGCCGGTTGAGCTGGAAAAGGGACCTGTGAGTGTT 1850
Query 1941 GCAGAGGCACCATCAAGCCAGAAGACAGCAGCGGGTTTGGTTCTGAATGCTCAGAAAGGG 2000
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1851 GCAGAGGCACCATCAAGCCAGAAGACAGCAGCCGGTTTGGTTCTGAATGCTCAGAAAGGG 1910
Query 2001 TCTGATAACTATTTGGAATTTGATTTCTTCTAGCGTTACGGTTAGACATATGGTACTCTA 2060
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1911 TCTGATAACTATTTGGAATTTGATTTCTTCTAGCGTTACGGTTAGACATATGTTACTCTA 1970
Query 2061 TTCTTCCTTAGAAGACTATGTGATAAA-A-GATGATCAGGTGTTGATGTTTCGCTCTTTA 2118
|||||||||| |||||| |||| |||| | ||||||||||||||||||||||||| ||||
Sbjct 1971 TTCTTCCTTAAAAGACTCTGTGGTAAAGATGATGATCAGGTGTTGATGTTTCGCTTTTTA 2030
Query 2119 TAGATTGCCATGAATTGTAAGCTTGTTTGTATGCATAAGCTGCTGTAGTTTATAAAAATG 2178
||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2031 TAGATTGTCATGAATTGTATGCTTGTTTGTATGCATAAGCTGTTGTAGTTTATAAAAATG 2090
Query 2179 TTGTAACTGTTTCTCGTAACCTTATTAGTTGTTATCAGAGTTCCTTTTTACTCGCTCTAT 2238
|||||||||||||||||||| ||||||||| |||||||| |||||||| ||| ||||||
Sbjct 2091 TTGTAACTGTTTCTCGTAACGTTATTAGTTTTTATCAGAATTCCTTTTCACTTACTCTAT 2150
Query 2239 CCAAACACAAAAC--ATTA-CATCAAATGTATTGTCTCTGC 2276
| || ||||||| | || |||||||||||||||||||||
Sbjct 2151 CGAATGACAAAACGCAGTAACATCAAATGTATTGTCTCTGC 2191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85741141495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5