BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47760.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494186 jgi|Araly1|494186|fgenesh2_kg.8__2__AT5G47760.1 1426 0.0
> Ahg494186 jgi|Araly1|494186|fgenesh2_kg.8__2__AT5G47760.1
Length=1048
Score = 1426 bits (772), Expect = 0.0
Identities = 898/959 (94%), Gaps = 8/959 (1%)
Strand=Plus/Plus
Query 33 agaagaagaagaagaagaCA---CT-CCTCCAATGGCGCCTCAGCTTCTCTCCTCCAGTA 88
|||||||||| ||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 2 AGAAGAAGAAAAAGAAGACACTCCTCCCTCCAATGGCGCCTCAGCTTCTCTCCTCCCGTA 61
Query 89 ACTTCAAATCTCTCTTTGACTCTGTCGATACGTTCCTCTTCGACTGCGATGGTGTTATAT 148
|||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct 62 ACTTCAAATCTCTCTTTGACTCTGTCGACACTTTCCTATTTGACTGCGATGGTGTTATAT 121
Query 149 GGAAGGGTGAAACGCTCATCGATGGCGTCTCCCAAACTCTCGACCTTATCCGTTCTAAGG 208
|||||||||||| |||||||||||||||| |||||||||| ||||| ||||| |||||||
Sbjct 122 GGAAGGGTGAAAAGCTCATCGATGGCGTCGCCCAAACTCTGGACCTAATCCGCTCTAAGG 181
Query 209 GTAAAAATGTTGTCTTTGTGACCAACAATTCCGTAAAATCGAGGAGGCAATACGCTGAAA 268
|||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 182 GTAAAAATCTTGTCTTTGTGACCAATAATTCGGTCAAATCGAGGAGGCAATACGCTGAAA 241
Query 269 AGTTCCGATCTTTGGGTGTCACTTCTATTACTCAGGATGAGATCTTCTCTTCGTCATTTG 328
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 242 AGTTCCGATCTTTGGGTGTCCCTTCTGTTACTCAGGATGAGATCTTCTCTTCGTCATTTG 301
Query 329 CGGCAGCTATGTATCTCAAAGTCAATAACTTTCC-TAAGGACAAGAAGGTTTATGTGATT 387
|||| |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 302 CGGCCGCTATGTACCTCAAAGTCAACAA-TTTCCATAAGGACAAGAAGGTTTATGTGATT 360
Query 388 GGTGGAGAGGGTGTTCTTGAGGAGCTGCAGATTGCCGGTTTTACAGGTCTTGGTGGTCCT 447
||||| || || ||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 361 GGTGGGGAAGGCATTCTTGAGGAGCTCCAGATTGCTGGTTTTACAGGTCTCGGTGGTCCT 420
Query 448 GAAGATGGTGAAAAGAAGGCACAATGGAAATCAAACTCTCTCTTTGAACATGATAAAAGT 507
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGACGGTGAAAAGAGGGCACAATGGAAATCAAACTCTCTCTTTGAACATGATAAAAGC 480
Query 508 GTGGGAGCAGTTGTAGTTGGACTAGACCCCAACATTAACTACTATAAGCTTCAGTACGGG 567
|||||||||||||| || |||||||||||||| || ||||||||||||||||| |||||
Sbjct 481 GTGGGAGCAGTTGTGGTCGGACTAGACCCCAATATAAACTACTATAAGCTTCAATACGGT 540
Query 568 ACTCTCTGTGTACGCGAGAATCCGGGATGTCTCTTCATTGCGACCAACCGTGATGCAGTA 627
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 541 ACCCTCTGTGTACGCGAGAATCCGGGATGTCTTTTCATTGCAACCAACCGTGATGCAGTA 600
Query 628 GGACATATGACGGATCTGCAAGAGTGGCCTGGTGCTGGGTGTATGGTTGCTGCCATGTGT 687
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GGACATATGACGGATCTCCAAGAGTGGCCTGGTGCTGGTTGTATGGTTGCTGCCATGTGT 660
Query 688 GGATCGACTGAAAGAGAACCAATAGTTGTTGGGAAACCATCTACTTTCATGATGGACTTT 747
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGATCAACTGAAAGAGAACCAATAGTTGTTGGGAAACCATCTACTTTCATGATGGACTTT 720
Query 748 CTGCTACAAAAATTTGGGACGGAAACGTCAAGAATGTGCATGGTAGGTGATAGGCTAGAT 807
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 721 CTGCTACAAAAATTTGGGACAGAAACGTCAAGAATGTGCATGGTGGGTGATAGGCTAGAT 780
Query 808 ACTGATATCTTGTTTGGGCAGAATGCTGGCTGCAAAACTCTCCTCGTCCTAACAGGGGTG 867
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTGATATCTTGTTTGGACAGAATGCTGGCTGCAAAACTCTCCTCGTCCTAACAGGGGTG 840
Query 868 ACAAGTGAATCTAATCTACTAGATA-AGGGCAACAAGATAGAACCAGACTATTACACAAG 926
||||||||||| ||||||||| | | |||||||| |||| ||||||||||||||||||||
Sbjct 841 ACAAGTGAATCAAATCTACTAAA-AGAGGGCAACGAGATTGAACCAGACTATTACACAAG 899
Query 927 CACAGTCTCTGATATCATAAAACTGATGGAGTCCCCCTAGTAAGTAAGGGCATCATCAT 985
||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 900 CACGGTCTCTGATATGATGAAACTGATGGAGTCTCCCTAGTAAGTAAGGGCATCATCAT 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5