BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47770.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948214 jgi|Araly1|948214|scaffold_800101.1 1653 0.0
Ahg493157 jgi|Araly1|493157|fgenesh2_kg.7__2590__AT4G17190.1 1214 0.0
> Ahg948214 jgi|Araly1|948214|scaffold_800101.1
Length=1072
Score = 1653 bits (895), Expect = 0.0
Identities = 1003/1055 (95%), Gaps = 7/1055 (1%)
Strand=Plus/Plus
Query 231 GTATCCAAAG--C-TCTTCAATGGAGACCGATCTCAAGTCAACCTTTCTCAACGTTTATT 287
|||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GTATCCAAAGCTCTTCTTCAATGGAGGCCGATCTCAAGTCAACCTTTCTCAACGTTTATT 60
Query 288 CTGTTCTCAAGTCTGACCTTCTTCATGACCCTTCCTTCGAATTCACCAATGAATCTCGTC 347
| ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||
Sbjct 61 CCGTTCTCAAGTCCGACCTCCTTCACGACCCTTCCTTCGAATTCACCGATGAATCTCGTC 120
Query 348 TCTGGGTTGATCGGATGCTGGACTACAATGTACGTGGAGGGAAACTCAATCGGGGTCTCT 407
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGGGTTGACCGTATGCTCGACTACAATGTACGTGGAGGGAAACTCAATCGGGGTCTCT 180
Query 408 CTGTTGTTGACAGTTTCAAACTTTTGAAGCAAGGCAATGATTTGACTGAGCAAGAGGTTT 467
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 CCGTTGTTGACAGCTTCAAACTTTTGAAGCAAGGCAAAGATTTGACTGAGCAAGAGGTTT 240
Query 468 TCCTCTCTTGTGCTCTCGGTTGGTGCATTGAATGGCTCCAAGCTTATTTCCTTGTGCTTG 527
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 241 TTCTCTCTTGTGCTCTCGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTACTTG 300
Query 528 ATGATATTATGGATAACTCTGTCACTCGCCGTGGTCAACCTTGCTGGTTCAGAGTTCCTC 587
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 301 ATGACATTATGGATAACTCTGTCACCCGCCGTGGCCAACCTTGCTGGTTCAGAGTTCCTC 360
Query 588 AGGTTGGTATGGTTGCCATCAATGATGGGATTCTACTTCGCAATCACATCCACAGGATTC 647
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 361 AGGTTGGTATGGTTGCCATCAACGATGGGATTCTGCTTCGCAATCACATCCACAGGATTC 420
Query 648 TCAAAAAGCATTTCC-GTGATAAGCCTTACTATGTTGACCTTGTTGATTTGTTTAATGAG 706
|||||||||| |||| | || | |||||||||||||||||| ||||||||||||||||||
Sbjct 421 TCAAAAAGCACTTCCGGGGA-ATGCCTTACTATGTTGACCTCGTTGATTTGTTTAATGAG 479
Query 707 GTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGAGAA 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 GTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGCGAA 539
Query 767 AAGGATTTGGCCAAGTACTCATTGTCAATCCACCGTCGTATTGTCCAGTACAAAACGGCT 826
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 540 AAGGATTTGTCCAAGTACTCATTGTCAATTCACCGGCGTATTGTCCAGTACAAAACGGCT 599
Query 827 TATTACTCATTTTATCTCCCTGTTGCTTGTGCGTTGCTTATGGCCGGCGAAAATTTGGAA 886
|||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 600 TATTACTCGTTTTATCTCCCTGTTGCTTGTGCATTGCTTATGGCGGGTGAAAATTTGGAA 659
Query 887 AACCATATTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGGAT 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AACCATATTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGGAT 719
Query 947 GATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAGATAGGAACAGATATAGAA 1006
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 GATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAGATAGGAACGGATATAGAA 779
Query 1007 GATTTCAAATGCTCGTGGTTGGTGGTTAAGGCATTAGAGCGCTGCAGCGAAGAACAAACT 1066
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 780 GATTTCAAATGCTCGTGGTTGGTGGTCAAGGCATTAGAACGCTGCAGCGAAGAACAAACT 839
Query 1067 AAGATATTATATGAGAACTATGGTAAACCCGACCCATCGAACGTTGCTAAAGTGAAGGAT 1126
||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 840 AAGATATTATATGAGAATTATGGTAAAGCCGACCCATCAAACGTTGCTAAAGTGAAGGAT 899
Query 1127 CTCTACAAAGAGCTGGATCTTGAGGGAGTTTTCATGGAGTATGAGAGCAAAAGCTACGAG 1186
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 900 CTCTACAAAGAGCTTGATCTTGAGGGAGTGTTCATGGAGTATGAGAGCAAAAGCTATGAG 959
Query 1187 AAGCTGACTGG-AGCGATTGAGGGACACCAAAGTAAAGCAATCCAAGCAGTGCTAAAATC 1245
||||||| ||| || ||||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct 960 AAGCTGA-TGGGAGTGATTGAGGGTCACAAAAGTACAGCAATCCAAGCAGTGCTAAAATC 1018
Query 1246 CTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGT 1280
|||||||||||||||||||||||||||||||||||
Sbjct 1019 CTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGT 1053
> Ahg493157 jgi|Araly1|493157|fgenesh2_kg.7__2590__AT4G17190.1
Length=1131
Score = 1214 bits (657), Expect = 0.0
Identities = 909/1032 (88%), Gaps = 11/1032 (1%)
Strand=Plus/Plus
Query 257 GATCTCAAGTCAACCTTTCTCAACGTTTATTCTGTTCTCAAGTCTGACCTTCTTCATGAC 316
||||| || |||||||| ||| ||||||| ||| ||||||||||||| || ||||| ||
Sbjct 16 GATCTGAAATCAACCTTCCTCGACGTTTACTCTATTCTCAAGTCTGATCTGCTTCAAGAT 75
Query 317 CCTTCCTTCGAATTCACCAATGAATCTCGTCTCTGGGTTGATCGGATGCTGGACTACAAT 376
|||||||| ||||||||| | || ||||||| ||| |||| |||||||| |||||||||
Sbjct 76 CCTTCCTTTGAATTCACCCACGAGTCTCGTCAATGGCTTGAACGGATGCTTGACTACAAT 135
Query 377 GTACGTGGAGGGAAACTCAATCGGGGTCTCTCTGTTGTTGACAGTTTCAAACTTTTGAAG 436
|||||||| ||||| || ||||| ||||||||||| ||||| || | ||| || ||||||
Sbjct 136 GTACGTGGCGGGAAGCTTAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTCTTGAAG 195
Query 437 CAAGG-CAATGATTTGACTGAGCAAGAGGTTTTCCTCTCTTGTGCTCTCGGTTGGTGCAT 495
||||| ||| || ||||| ||| ||||| ||||||||| ||||||||||| ||||||||
Sbjct 196 CAAGGCCAA-GACTTGACGGAGAAAGAGACTTTCCTCTCGTGTGCTCTCGGGTGGTGCAT 254
Query 496 TGAATGGCTCCAAGCTTATTTCCTTGTGCTTGATGATATTATGGATAACTCTGTCACTCG 555
||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 255 TGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCACACG 314
Query 556 CCGTGGTCAACCTTGCTGGTTCAGAGTTCCTCAGGTTGGTATGGTTGCCATCAATGATGG 615
|||||| || ||||| ||||| ||| || ||||||||||| ||||||| || |||||
Sbjct 315 CCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACGATGG 374
Query 616 GATTCTACTTCGCAATCACATCCACAGGATTCTCAAAAAGCATTTCCGTGATAA-GCCTT 674
|||||||||||||||||| |||||||||||||||||||| || ||| | || || |||||
Sbjct 375 GATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAACACTTCAGGGA-AATGCCTT 433
Query 675 ACTATGTTGACCTTGTTGATTTGTTTAATGAGGTTGAGTTGCAAACAGCTTGTGGCCAGA 734
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 434 ACTATGTTGACCTTGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGTGGCCAGA 493
Query 735 TGATAGATTTGATCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTC-A 793
|||| ||||||||||| |||||||| |||||||| |||||| | |||||||| ||| | |
Sbjct 494 TGATTGATTTGATCACTACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTG-CAA 552
Query 794 ATCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTGTTGCT 853
||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 553 ATCCATCGGCGTATTGTCCAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTTGCT 612
Query 854 TGTGCGTTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGATGTGAAGAATGTTCTT 913
||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 613 TGTGCATTGCTTATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGAATGTTCTT 672
Query 914 GTTGACATGGGAATCTACTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGCTGATCCC 973
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 673 GTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGATTGTTTTGCTGATCCC 732
Query 974 GAGACGCTTGGCAAGATAGGAACAGATATAGAAGATTTCAAATGCTCGTGGTTGGTGGTT 1033
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 733 GAGACACTTGGCAAGATAGGGACAGACATAGAGGATTTCAAATGCTCCTGGTTGGTGGTT 792
Query 1034 AAGGCATTAGAGCGCTGCAGCGAAGAACAAACTAAGATATTATATGAGAACTATGGTAAA 1093
|||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 793 AAGGCATTGGAACGCTGCAATGAAGAACAAACTAAGATATTATACGAGAACTATGGTAAA 852
Query 1094 CCCGACCCATCGAACGTTGCTAAAGTGAAGGATCTCTACAAAGAGCTGGATCTTGAGGGA 1153
|||| ||||| ||||||||||| ||||| | ||||||||||||||| ||||| ||||||
Sbjct 853 GCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAGGGA 912
Query 1154 GTTTTCATGGAGTATGAGA-GCAAAAGCTACGAGAAGCTGACTGGAGC-GATTGAGGGAC 1211
| |||||||| ||||||| | ||| |||| ||||||||||| || ||| || | |
Sbjct 913 GCGTTCATGGAATATGAGAAGGAAA-GCTATGAGAAGCTGACAA-AGTTGATCGAAGCTC 970
Query 1212 ACCAAAGTAAAGCAATCCAAGCAGTGCTAAAATCCTTCTTGGCTAAGATCTACAAGAGGC 1271
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 971 ACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGAGGC 1030
Query 1272 AGAAGTAGTAGA 1283
|||||||| |||
Sbjct 1031 AGAAGTAG-AGA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5