BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47770.1 Length=1493 Score E Sequences producing significant alignments: (Bits) Value Ahg948214 jgi|Araly1|948214|scaffold_800101.1 1653 0.0 Ahg493157 jgi|Araly1|493157|fgenesh2_kg.7__2590__AT4G17190.1 1214 0.0 > Ahg948214 jgi|Araly1|948214|scaffold_800101.1 Length=1072 Score = 1653 bits (895), Expect = 0.0 Identities = 1003/1055 (95%), Gaps = 7/1055 (1%) Strand=Plus/Plus Query 231 GTATCCAAAG--C-TCTTCAATGGAGACCGATCTCAAGTCAACCTTTCTCAACGTTTATT 287 |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 GTATCCAAAGCTCTTCTTCAATGGAGGCCGATCTCAAGTCAACCTTTCTCAACGTTTATT 60 Query 288 CTGTTCTCAAGTCTGACCTTCTTCATGACCCTTCCTTCGAATTCACCAATGAATCTCGTC 347 | ||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||| Sbjct 61 CCGTTCTCAAGTCCGACCTCCTTCACGACCCTTCCTTCGAATTCACCGATGAATCTCGTC 120 Query 348 TCTGGGTTGATCGGATGCTGGACTACAATGTACGTGGAGGGAAACTCAATCGGGGTCTCT 407 |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTGGGTTGACCGTATGCTCGACTACAATGTACGTGGAGGGAAACTCAATCGGGGTCTCT 180 Query 408 CTGTTGTTGACAGTTTCAAACTTTTGAAGCAAGGCAATGATTTGACTGAGCAAGAGGTTT 467 | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 CCGTTGTTGACAGCTTCAAACTTTTGAAGCAAGGCAAAGATTTGACTGAGCAAGAGGTTT 240 Query 468 TCCTCTCTTGTGCTCTCGGTTGGTGCATTGAATGGCTCCAAGCTTATTTCCTTGTGCTTG 527 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 241 TTCTCTCTTGTGCTCTCGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTACTTG 300 Query 528 ATGATATTATGGATAACTCTGTCACTCGCCGTGGTCAACCTTGCTGGTTCAGAGTTCCTC 587 |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 301 ATGACATTATGGATAACTCTGTCACCCGCCGTGGCCAACCTTGCTGGTTCAGAGTTCCTC 360 Query 588 AGGTTGGTATGGTTGCCATCAATGATGGGATTCTACTTCGCAATCACATCCACAGGATTC 647 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 361 AGGTTGGTATGGTTGCCATCAACGATGGGATTCTGCTTCGCAATCACATCCACAGGATTC 420 Query 648 TCAAAAAGCATTTCC-GTGATAAGCCTTACTATGTTGACCTTGTTGATTTGTTTAATGAG 706 |||||||||| |||| | || | |||||||||||||||||| |||||||||||||||||| Sbjct 421 TCAAAAAGCACTTCCGGGGA-ATGCCTTACTATGTTGACCTCGTTGATTTGTTTAATGAG 479 Query 707 GTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGAGAA 766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 480 GTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGCGAA 539 Query 767 AAGGATTTGGCCAAGTACTCATTGTCAATCCACCGTCGTATTGTCCAGTACAAAACGGCT 826 ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 540 AAGGATTTGTCCAAGTACTCATTGTCAATTCACCGGCGTATTGTCCAGTACAAAACGGCT 599 Query 827 TATTACTCATTTTATCTCCCTGTTGCTTGTGCGTTGCTTATGGCCGGCGAAAATTTGGAA 886 |||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 600 TATTACTCGTTTTATCTCCCTGTTGCTTGTGCATTGCTTATGGCGGGTGAAAATTTGGAA 659 Query 887 AACCATATTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGGAT 946 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AACCATATTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGGAT 719 Query 947 GATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAGATAGGAACAGATATAGAA 1006 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 720 GATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAGATAGGAACGGATATAGAA 779 Query 1007 GATTTCAAATGCTCGTGGTTGGTGGTTAAGGCATTAGAGCGCTGCAGCGAAGAACAAACT 1066 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 780 GATTTCAAATGCTCGTGGTTGGTGGTCAAGGCATTAGAACGCTGCAGCGAAGAACAAACT 839 Query 1067 AAGATATTATATGAGAACTATGGTAAACCCGACCCATCGAACGTTGCTAAAGTGAAGGAT 1126 ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 840 AAGATATTATATGAGAATTATGGTAAAGCCGACCCATCAAACGTTGCTAAAGTGAAGGAT 899 Query 1127 CTCTACAAAGAGCTGGATCTTGAGGGAGTTTTCATGGAGTATGAGAGCAAAAGCTACGAG 1186 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 900 CTCTACAAAGAGCTTGATCTTGAGGGAGTGTTCATGGAGTATGAGAGCAAAAGCTATGAG 959 Query 1187 AAGCTGACTGG-AGCGATTGAGGGACACCAAAGTAAAGCAATCCAAGCAGTGCTAAAATC 1245 ||||||| ||| || ||||||||| ||| |||||| |||||||||||||||||||||||| Sbjct 960 AAGCTGA-TGGGAGTGATTGAGGGTCACAAAAGTACAGCAATCCAAGCAGTGCTAAAATC 1018 Query 1246 CTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGT 1280 ||||||||||||||||||||||||||||||||||| Sbjct 1019 CTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGT 1053 > Ahg493157 jgi|Araly1|493157|fgenesh2_kg.7__2590__AT4G17190.1 Length=1131 Score = 1214 bits (657), Expect = 0.0 Identities = 909/1032 (88%), Gaps = 11/1032 (1%) Strand=Plus/Plus Query 257 GATCTCAAGTCAACCTTTCTCAACGTTTATTCTGTTCTCAAGTCTGACCTTCTTCATGAC 316 ||||| || |||||||| ||| ||||||| ||| ||||||||||||| || ||||| || Sbjct 16 GATCTGAAATCAACCTTCCTCGACGTTTACTCTATTCTCAAGTCTGATCTGCTTCAAGAT 75 Query 317 CCTTCCTTCGAATTCACCAATGAATCTCGTCTCTGGGTTGATCGGATGCTGGACTACAAT 376 |||||||| ||||||||| | || ||||||| ||| |||| |||||||| ||||||||| Sbjct 76 CCTTCCTTTGAATTCACCCACGAGTCTCGTCAATGGCTTGAACGGATGCTTGACTACAAT 135 Query 377 GTACGTGGAGGGAAACTCAATCGGGGTCTCTCTGTTGTTGACAGTTTCAAACTTTTGAAG 436 |||||||| ||||| || ||||| ||||||||||| ||||| || | ||| || |||||| Sbjct 136 GTACGTGGCGGGAAGCTTAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTCTTGAAG 195 Query 437 CAAGG-CAATGATTTGACTGAGCAAGAGGTTTTCCTCTCTTGTGCTCTCGGTTGGTGCAT 495 ||||| ||| || ||||| ||| ||||| ||||||||| ||||||||||| |||||||| Sbjct 196 CAAGGCCAA-GACTTGACGGAGAAAGAGACTTTCCTCTCGTGTGCTCTCGGGTGGTGCAT 254 Query 496 TGAATGGCTCCAAGCTTATTTCCTTGTGCTTGATGATATTATGGATAACTCTGTCACTCG 555 ||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| || Sbjct 255 TGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCACACG 314 Query 556 CCGTGGTCAACCTTGCTGGTTCAGAGTTCCTCAGGTTGGTATGGTTGCCATCAATGATGG 615 |||||| || ||||| ||||| ||| || ||||||||||| ||||||| || ||||| Sbjct 315 CCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACGATGG 374 Query 616 GATTCTACTTCGCAATCACATCCACAGGATTCTCAAAAAGCATTTCCGTGATAA-GCCTT 674 |||||||||||||||||| |||||||||||||||||||| || ||| | || || ||||| Sbjct 375 GATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAACACTTCAGGGA-AATGCCTT 433 Query 675 ACTATGTTGACCTTGTTGATTTGTTTAATGAGGTTGAGTTGCAAACAGCTTGTGGCCAGA 734 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 434 ACTATGTTGACCTTGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGTGGCCAGA 493 Query 735 TGATAGATTTGATCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTC-A 793 |||| ||||||||||| |||||||| |||||||| |||||| | |||||||| ||| | | Sbjct 494 TGATTGATTTGATCACTACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTG-CAA 552 Query 794 ATCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTGTTGCT 853 ||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 553 ATCCATCGGCGTATTGTCCAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTTGCT 612 Query 854 TGTGCGTTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGATGTGAAGAATGTTCTT 913 ||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||||| Sbjct 613 TGTGCATTGCTTATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGAATGTTCTT 672 Query 914 GTTGACATGGGAATCTACTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGCTGATCCC 973 |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 673 GTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGATTGTTTTGCTGATCCC 732 Query 974 GAGACGCTTGGCAAGATAGGAACAGATATAGAAGATTTCAAATGCTCGTGGTTGGTGGTT 1033 ||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct 733 GAGACACTTGGCAAGATAGGGACAGACATAGAGGATTTCAAATGCTCCTGGTTGGTGGTT 792 Query 1034 AAGGCATTAGAGCGCTGCAGCGAAGAACAAACTAAGATATTATATGAGAACTATGGTAAA 1093 |||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 793 AAGGCATTGGAACGCTGCAATGAAGAACAAACTAAGATATTATACGAGAACTATGGTAAA 852 Query 1094 CCCGACCCATCGAACGTTGCTAAAGTGAAGGATCTCTACAAAGAGCTGGATCTTGAGGGA 1153 |||| ||||| ||||||||||| ||||| | ||||||||||||||| ||||| |||||| Sbjct 853 GCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAGGGA 912 Query 1154 GTTTTCATGGAGTATGAGA-GCAAAAGCTACGAGAAGCTGACTGGAGC-GATTGAGGGAC 1211 | |||||||| ||||||| | ||| |||| ||||||||||| || ||| || | | Sbjct 913 GCGTTCATGGAATATGAGAAGGAAA-GCTATGAGAAGCTGACAA-AGTTGATCGAAGCTC 970 Query 1212 ACCAAAGTAAAGCAATCCAAGCAGTGCTAAAATCCTTCTTGGCTAAGATCTACAAGAGGC 1271 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 971 ACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGAGGC 1030 Query 1272 AGAAGTAGTAGA 1283 |||||||| ||| Sbjct 1031 AGAAGTAG-AGA 1041 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55878389415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5