BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47780.1
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478777 jgi|Araly1|478777|fgenesh2_kg.3__1478__AT5G47780.1 2942 0.0
Ahg948116 jgi|Araly1|948116|scaffold_800003.1 239 7e-62
> Ahg478777 jgi|Araly1|478777|fgenesh2_kg.3__1478__AT5G47780.1
Length=1920
Score = 2942 bits (1593), Expect = 0.0
Identities = 1847/1962 (94%), Gaps = 47/1962 (2%)
Strand=Plus/Plus
Query 62 TGACGACGACGATGATGGTGAAGCTTCGCAATCTTGTTCTTTTCTTCATGCTCCTCACCG 121
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1 TGACGACGACGATGATGGTGAAGCTTCGGAATCTTGTTCTTTTCTTGATGCTCCTCACCG 60
Query 122 TCGTTGCTCATATCCTTCTCTACACCGATCCCGCTGCCTCCTTCAAGACCCCCTTTTCTA 181
||| |||| |||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 61 TCGCAGCTCCTATCCTTCTCTACACCGATCCCGCCGCTTCCTTCAAGACCCACTTTTCTA 120
Query 182 AACGCGATTTCCTCGAGGACGTAACCGCCTTGACTTTCAATTCCGATGAGAATCGTTTGA 241
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 121 AACGCGATTTCCTCGAGGACGTAACCGCCTTGACTTTGAATTCCGATGGGAATCGTTTGA 180
Query 242 ATCTTCTTCCTCGGGAATCTCCCGCTGTGCTCAGAGGAGGACTCGTCGGTGCTGTCTATT 301
|||| ||||||||||||||||| |||||||||||||||||| || | | |
Sbjct 181 ATCTGCTTCCTCGGGAATCTCCGGCTGTGCTCAGAGGAGGA------GGAG--G---A-- 227
Query 302 CCGATAAGAATTCACGGCGGCTAGACCAATTGTCTGCTCGAGTTCTTTCCGCCACCGACG 361
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 -GGA-AAGAATTCACGGCGGCTAGACCAATTGTCTGCTCGAGTTCTTTCCGCCACCGACG 285
Query 362 ATGATACTCACTCACATACTGACATTTCCATCAAACAAGTCACTCATGATGCAGCCTCAG 421
||||||||||||| ||||||||||||||||| ||| | | | || ||
Sbjct 286 ATGATACTCACTCTCATACTGACATTTCCAT----CAA---A--C---A---AG--TC-- 326
Query 422 ACTCGCATATTAATAGGGAAAATATGCATGTTCAATTGACCCAACAAACCTCTGAAAAAG 481
||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 327 ACT--C--A-TAATAGGGAAAAGATGCATGTTCAATTGACCCAACAAACCTCTGAAAAAG 381
Query 482 TTGATGAGCAACCAGAGCCTAATGCTTTTGGAGCTAAGAAAGATACTGGAAACGTGTTGA 541
||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 382 TTGATGAGC-A--AGAGCCTAATGCTTTTGGAGCTAAGAAAGATACAGGAAACTTGTTGA 438
Query 542 TGCCTGATGCTCAAGTGAGGCATCTTAAAGATCAGCTTATTAGGGCAAAGGTTTATCTTT 601
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 439 TGCCTGATGCTCAACTGAGGCACCTTAAAGATCAGCTTATTAGGGCTAAGGTTTATCTTT 498
Query 602 CCCTTCCATCTGCAAAGGCCAATGCTCATTTTGTGAGAGAGCTTCGACTCCGTATTAAAG 661
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 499 CACTTCCATCTGCAAAGGCCAATGCACATTTTGTGAGAGAGCTTCGACTCCGTATTAAAG 558
Query 662 AAGTTCAACGGGCACTTGCAGATGCCTCCAAGGATTCGGATCTGCCAAAGACTGCTATAG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 559 AAGTTCAACGGGCACTTGCAGATGCCTCCAAGGATTCGGATCTGCCAAAGACTGCTACGG 618
Query 722 AAAAGCTAAAAGCAATGGAGCAAACACTGGCCAAAGGCAAGCAGATCCAAGATGACTGTT 781
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 619 AAAAGCTTAAAGCAATGGAGCAAACTTTGGCCAAAGGCAAGCAGATCCAAGATGACTGTT 678
Query 782 CTACAGTGGTCAAGAAGCTACGTGCTATGCTCCACTCCGCAGATGAGCAGCTACGGGTCC 841
| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 679 CCATTGTGGTCAAGAAGCTACGTGCAATGCTCCACTCCGCAGAGGAGCAGCTACGGGTCC 738
Query 842 ATAAGAAGCAAACCATGTTTTTGACTCAATTGACTGCTAAGACCATTCCTAAAGGACTTC 901
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 739 ATAAGAAGCAAACCATGTTCTTGACTCAATTGACTGCTAAGACCATTCCTAAAGGACTTC 798
Query 902 ACTGCCTTCCTCTGCGCCTCACTACAGACTATTATGCTTTAAATTCATCTGAACAACAAT 961
||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 799 ACTGCCTCCCTCTGCGCCTCACTACAGATTATTATGCTTTAAATTCATCTCAACAACAAT 858
Query 962 TTCCAAATCAGGAGAAACTAGAAGATACTCAGCTGTATCACTATGCCCTTTTCTCTGATA 1021
| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 859 TCCCAAATCAGGAGAAACTAGAAGATAATCAGCTCTATCACTATGCCCTTTTCTCTGATA 918
Query 1022 ATGTTTTGGCTACGTCAGTTGTTGTTAACTCTACCATAACCAATGCAAAGCATCCCTTAA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 919 ATGTTTTGGCTACGTCAGTTGTTGTTAACTCTACCATAACCAATGCAAAGCATCCCTCAA 978
Query 1082 AGCATGTCTTCCACATCGTCACAGACAGACTCAATTATGCGGCAATGAGGATGTGGTTCC 1141
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 979 AGCATGTCTTCCACATCGTCACTGACAGACTCAATTATGCTGCAATGAGGATGTGGTTCC 1038
Query 1142 TGGACAATCCACCTGGCAAAGCCACCATCCAGGTTCAGAATGTTGAAGAATTTACATGGC 1201
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TGGACAATCCACCTGACAAAGCCACCATCCAGGTTCAGAATGTTGAAGAATTTACATGGC 1098
Query 1202 TGAATTCAAGCTACAGTCCCGTTCTCAAACAGCTTAGTTCTAGATCGATGATAGATTATT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TGAATTCAAGCTACAGTCCCGTTCTCAAACAGCTTAGTTCTAGATCGATGATAGATTATT 1158
Query 1262 ACTTCAGAGCCCACCATACAAATTCAGACACCAACTTGAAGTTCCGGAATCCAAAATACT 1321
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1159 ACTTCAGGGCCCACCATACAAATTCAGACACAAACTTGAAGTTCCGGAATCCAAAATACT 1218
Query 1322 TATCGATCCTTAATCATCTTCGTTTTTACTTGCCTGAGATCTTTCCCAAGCTCAGCAAAG 1381
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1219 TATCAATCCTTAATCATCTTCGTTTTTACTTGCCTGAGATCTTTCCGAAGCTCAGCAAAG 1278
Query 1382 TGCTCTTCTTGGATGATGATATAGTTGTGCAGAAGGACCTTTCTGGTCTTTGGTCAGTTG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TGCTCTTCTTGGATGATGATATAGTTGTGCAGAAGGACCTTTCTGGTCTTTGGTCAGTTG 1338
Query 1442 ATCTGAAAGGTAATGTTAACGGTGCTGTAGAGACGTGTGGGGAAAGCTTTCATCGCTTTG 1501
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1339 ATCTGAAAGGTAATGTCAACGGTGCTGTAGAGACTTGTGGGGAAAGCTTTCATCGCTTTG 1398
Query 1502 ACCGTTATCTGAACTTCTCAAATCCACTCATTTCCAAGAACTTTGACCCTCGAGCTTGTG 1561
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1399 ACCGTTATCTGAACTTCTCAAATCCACTCATCTCCAAGAACTTTGACCCTCGAGCTTGTG 1458
Query 1562 GTTGGGCGTATGGTATGAATGTCTTTGATCTGGATGAATGGAAGAGGCAAAACATCACAG 1621
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 GTTGGGCATATGGTATGAATGTCTTTGATCTGGATGAATGGAAGAGGCAAAACATCACAG 1518
Query 1622 AAGTTTATCATCGATGGCAGGATCTGAATCAAGACCGAGAATTGTGGAAGCTAGGGACGT 1681
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 AGGTTTATCATCGATGGCAGGATCTGAATCAAGACCGAGAATTGTGGAAGCTAGGGACGT 1578
Query 1682 TGCCGCCTGGTCTAATCACATTTTGGAGACGAACATATCCGCTAGACCGGAAATGGCACA 1741
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1579 TACCGCCTGGTCTCATCACATTCTGGAGACGAACATATCCGCTAGACCGGAAATGGCACA 1638
Query 1742 TACTAGGGCTTGGATACAACCCGAGTGTGAACCAAAGGGATATTGAGAGGGCAGCCGTGA 1801
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1639 TACTAGGCCTTGGATACAACCCGAGTGTGAACCAGAGGGATATTGAGAGGGCAGCCGTGA 1698
Query 1802 TACACTATAATGGCAACCTCAAACCATGGCTAGAGATTGGGATTCCAAGATACAGAGGCT 1861
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1699 TACACTATAATGGTAACCTCAAACCATGGCTAGAGATTGGGATTCCAAGATACCGAAGCT 1758
Query 1862 TCTGGTCAAAGCATGTAGACTATGAGCACGTTTATCTCAGAGAATGCAACATCAATCCTT 1921
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1759 TCTGGTCAAAGCATGTAGACTATGAGCAGGTTTATCTCAGAGAATGCAACATCAATCCTT 1818
Query 1922 AGAATTAGAGTCTGTTGTGAGGGCAATATTATACGTTT--A-T--AATCTGACGAGATGA 1976
||||||||||||||||||||| ||||| ||| |||||| | | ||||||| ||| |||
Sbjct 1819 AGAATTAGAGTCTGTTGTGAGAGCAATGTTAGACGTTTCCACTCTAATCTGAGGAGCTGA 1878
Query 1977 TCATTACATGAAATTGTATATGTCACGGTAAAAGGAGTTCCA 2018
|||||||||||||||||||||| |||||||||||||||||||
Sbjct 1879 TCATTACATGAAATTGTATATGACACGGTAAAAGGAGTTCCA 1920
> Ahg948116 jgi|Araly1|948116|scaffold_800003.1
Length=228
Score = 239 bits (129), Expect = 7e-62
Identities = 145/153 (95%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 714 TGCTATAGAAAAGCTAAAAGCAATGGAGCAAACACTGGCCAAAGGCAAGCAGATCCAAGA 773
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 46 TGCTATTGAAAAACTAAAAGCAATGGAGCAAACATTGGCCAAAGGCAAGCAGATCCAAGA 105
Query 774 TGACTGTTCTACAGTGGTCAAGAAGCTACGTGCTATGCTCCACTCCGCAGATGAGCAGCT 833
||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 106 TGACTGTTCCACAGTGGTCAAGAAGCTACGTGCAATGCTCCACTCGGCAGAGGAGCAGCT 165
Query 834 ACGGGTCCATAAGAAGCAAACCATGTTTTTGAC 866
||||||||||||||||||||||||||| |||||
Sbjct 166 ACGGGTCCATAAGAAGCAAACCATGTTCTTGAC 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78046912005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5