BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47790.1
Length=2079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356289 jgi|Araly1|356289|fgenesh1_pg.C_scaffold_8000076 1474 0.0
> Ahg356289 jgi|Araly1|356289|fgenesh1_pg.C_scaffold_8000076
Length=1443
Score = 1474 bits (798), Expect = 0.0
Identities = 1011/1108 (91%), Gaps = 38/1108 (3%)
Strand=Plus/Plus
Query 112 GAAGATCTGGTCTTGACAGGTTTAAGAAGTCCCAAACTTCGGAACCCTTCTCTGTATCAG 171
|||||||||| || |||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 11 GAAGATCTGGGCTCGACAGGTTTAAGAAGTCCGAAACCTCGGAACCATTCTCTGTATCAG 70
Query 172 CAAATCCTCCTCCGGTGGTACAACAACA-TCTGTCTCCGGAGGCATTGTCGGGGCAAAAA 230
||||||||||||||||||| |||||| || |||| | |||||| |||||| |||
Sbjct 71 CAAATCCTCCTCCGGTGGTGGTACAACATTC-GTCT---GCGGCATTATCGGGG---AAA 123
Query 231 ACTCAGATTGGAGCTGGTCAATCAAACTGGCATCCCCCTGATTGGGCGATTGAGCCTCGT 290
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 124 ACTCAGATTGGAGCTGGTCAATCAAACTGGCATCCACCTGATTGGGCGATTGAGCCTCGT 183
Query 291 GCCGGTGTCTACTCTCTGGAAGTTGTGAAAGACGGCCAGATCCTTGATCGGATTCATCTA 350
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 184 GCCGGTGTCTACTCTCTGGAGGTTGTGAAAGACGGCCAGATCCTTGATCGGATTCATCTA 243
Query 351 GATAGACGAAGGCATATCTTCGGGAGACAACATCAGACTTGTGATTTTGTCCTTGATCAT 410
|||||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 244 GATAGACGGAGTCATATCTTCGGGAGACAACATCAGACTTGTGATTATGTGCTTGATCAT 303
Query 411 CAGTCTGTTTCCCGCCAGCATGCCGCAGTTGTTCCTCACAAGAATGGCAGCATCTTTGTG 470
||||||||||| ||||| |||||||| |||||||||||||||||||| || |||||||||
Sbjct 304 CAGTCTGTTTCACGCCAACATGCCGCCGTTGTTCCTCACAAGAATGGTAGTATCTTTGTG 363
Query 471 ATTGACTTGGGATCAGCTCATGGTACGTTTGTTGCAAATGAGAGGTTGACTAAAGATACT 530
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 364 ATTGACTTGGGATCAGCTCATGGTACCTTTGTTGCTAATGAGAGATTGACTAAAGATACT 423
Query 531 CCTGTAGAGCTTGAAGTGGGTCAATCCTTACGATTTGCTGCCTCCACAAGAATCTACCTT 590
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 424 CCTGTAGAGCTTGAAGTAGGCCAATCCTTACGATTTGCTGCCTCTACAAGAATCTACCTT 483
Query 591 CTGAGAAAGAACAGTGAGGCTCTCTTTTCTCGCCCTCCACCTCCAGCTGAGATTAAGCTT 650
|||| |||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct 484 TTGAGGAAGAACAGTGAGGCTCTCTTTTCTCG-----C-CCT----C--AGATTAAGCTT 531
Query 651 CCTCCACCTCCTGATGCTTCTGATGAGGAAGCTGTTGTTGCTTACAATACCTTGCTGAAT 710
|| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 532 CCCCCACCTCCTGATGCTTCTGATGAGGAAGCTCTTGTTGCATACAATACTTTGCTGAAT 591
Query 711 CGATATGGTTTAAGCAATGGAGAATCTGGTGGTATGTTAGGGAAAAGGAAAGAGAAGACC 770
||||||||||||||| |||||||||| ||| | ||||||| |||||||| |||||||||
Sbjct 592 CGATATGGTTTAAGCGATGGAGAATCGGGTTCTGTGTTAGGTAAAAGGAAGGAGAAGACC 651
Query 771 GGATCAGAAGCGGGAGTGGCTAAGAGGATGAAGAAAGTGAGAGTGAGCTTCAGGGATCAA 830
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 652 GGATCAGAAGCCGGAGTGGCTAAGAGGATGAAGAATGTGAGAGTGAGCTTCAGGGATCAA 711
Query 831 CTAGGAGGAGAGCTGGCTGAGATTGTTGGCATGTCTGATGGAGCAGACGTGGAAACAGAG 890
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 712 CTTGGAGGAGAGCTGGCTGAGATTGTTGGCATGTCAGATGGAGCAGACGTGGAAACAGAG 771
Query 891 CCTGGTCCTATAAATGTCAAAGAAGGAAGCCTCGTTGGGAAATATGAATCACTGGTGCGA 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 772 CCTGGTCCTATAAATGTCAAAGAAGGAAGCCTCGTTGGGAAATATGAATCACTGGTGCAA 831
Query 951 GTGACACTCATACCCAAAGGCAAAGTGAAGGAAGAGAAAGCCTTTACAGGAGGAACAAGA 1010
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 832 GTGACACTCATACCCAAAGGCAAAGTGAAGGAAGAGAAAGCCTTTACAGGA--ACCA-GA 888
Query 1011 GGAGGTGTAACAGATCGACTCCAGGAAGCTATGAATATGTTGAAACGGGGTCCAAAAACA 1070
|| | || | | ||||||||||||||||| ||||||||||| ||| |||||||||||| |
Sbjct 889 GGTG-TG-A-CGGATCGACTCCAGGAAGCCATGAATATGTTAAAAGGGGGTCCAAAAAGA 945
Query 1071 GGGATTTACGATGACCTTTACGGTGGTGACTCACTTGCCAAGGCTGTTGGTACGTCATGG 1130
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 946 GGGATTTATGATGATCTTTACGGTGGTGACTCACTTGCCAAGGCCGTTGGTACGTCATGG 1005
Query 1131 GCTTCTGTGAGTCAACCAGCAGCT---G--AAACT-GAA--TG--TG--GAGGGGTTGGT 1178
|||||||||||| |||||||| || | ||| ||| || || |||||||||||
Sbjct 1006 GCTTCTGTGAGTGAACCAGCATCTAAAGTTAAAGAAGAAACTGAATGCAGAGGGGTTGGT 1065
Query 1179 GAAGAAGATGATAACGACGATCTGTTTG 1206
||||||||||||||||||||||||||||
Sbjct 1066 GAAGAAGATGATAACGACGATCTGTTTG 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78199272985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5