BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47800.1
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915339 jgi|Araly1|915339|Al_scaffold_0008_90 207 2e-52
> Ahg915339 jgi|Araly1|915339|Al_scaffold_0008_90
Length=309
Score = 207 bits (112), Expect = 2e-52
Identities = 237/294 (81%), Gaps = 22/294 (7%)
Strand=Plus/Plus
Query 1656 AACGGTCGTCCAAGCACTCTTCTTCGACCAAGAGAGCGGTTCCAAGGGAGCATCAAGTCG 1715
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 33 AACGGTCGTCCAAGCCCTCTTCTTCGACCAAGAGAGCAGTTCCAAGGGAGCATCAAGTCG 92
Query 1716 ATCAGAGAGCCAAGAACTCTTCACAAGAGGTAAAGAGACACCCACTGATGA-ACATAGC- 1773
|| ||||||||||||| || || |||||| ||||||||| ||||| ||| | ||| |||
Sbjct 93 ATTAGAGAGCCAAGAATTCGTCTCAAGAGTTAAAGAGACTCCCACGGAT-ATACACAGCA 151
Query 1774 ATGATGCACAAGCTTCACCTAGGTCCAGCTTCTACAGGGAAAGCTA-A--GAACGTGCTT 1830
|| ||||||||||||||||||||||||||| ||| | ||| | ||| ||
Sbjct 152 AT-ATGCACAAGCTTCACCTAGGTCCAGCTGAAACA--G-CTTCTATAGGGAA--AGC-- 203
Query 1831 GAAGAGGGATGCAAAAGAGGAGAAGAGAAAACCAGATCCAGTACAGATCCTAAGAAGATA 1890
||||| || | || |||| || | ||| ||| || | ||| || ||||||||
Sbjct 204 GAAGA-ATATACTTGAG-GGAGGAG-GCAAA--AGA-GGAG-A-AGACCCCAAGAAGATC 255
Query 1891 GTGTGGAAAGGAACAGGGTCAGAACATAAGCATCATATAAGTAGAGACAGGTAG 1944
||| || || ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 256 GTGCGGGAACGAAGAGGGTCAGAGCATAAGCATCATATAAGTAGAGACAGGTAG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79684792540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5