BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47830.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494824 jgi|Araly1|494824|fgenesh2_kg.8__640__AT5G47830.1 992 0.0
> Ahg494824 jgi|Araly1|494824|fgenesh2_kg.8__640__AT5G47830.1
Length=638
Score = 992 bits (537), Expect = 0.0
Identities = 607/641 (95%), Gaps = 3/641 (0%)
Strand=Plus/Plus
Query 1 TGCATTACGCCATGAACAGTGATCCCGAGACGCAGATGATGGATGCCGACTCCACCGAAA 60
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||| |
Sbjct 1 TGCATTACGCCATGAACAGTAATCCCGAGACGGAGATGATGGATACCGACTCCCCCGAGA 60
Query 61 CGTTCATGCTCGACAAACCCAGCACCGCCAGAGATTTCCTCTCCGCCGCTCGTAGGCTCG 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CGTTCATGCTCGACAAACCCAGCACCGCCAGAGATTTTCTCTCCGCCGCTCGTAGGCTCG 120
Query 121 TCGATCAAGGAGAACCATCTCAAGCTCTCCAAGCGGTCGTGATGGCGATGAGAAACCAAG 180
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TCGATCAAGGAGAGCCATCTCAAGCTCTTCAAGCGGTCGTGATGGCGATGAGAAACCAAG 180
Query 181 GAGGAGATGAGGCGGTTCTTCAGATACTGAACCGTACCCGTGAACTATACAAGCGTAGAA 240
||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAGATGAGGCAGTACTTCAGATATTGAACCGTACCCGTGAACTATACAAGCGTAGAA 240
Query 241 TTCAAGAAACAGCTAGTATGGATCAGCTGGCTTCTATATTTGCAGAGTGTGCCATTACAG 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TTCAAGAAACAGCTAGTATGGATCAGCTGGCTTCTATATTTGCCGAGTGTGCCATTACAG 300
Query 301 AAGCACAGCCTCTTGCGCTTGATGAGCCTACAACGTCAAAAGACTTATTTGGTACCAAAC 360
||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 AAGCACAGCCTCTTGGGC---ATGAGCCAACAACATCAAAAGACTTATTTGGTACCAAAG 357
Query 361 AAACAGTTACAGCAGATGCTCATGGCATATCTATTCTGGAAAAAAGTGGGAGGTCACAGA 420
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 358 AAACAGTTACAGCGGATGCTCAGGGCATATCTATTCTGGAAAAAAGCGGGAGGTCACAGA 417
Query 421 TCATGCTCGATGCCTTTGCTGACGGAAGCAGTTTTATCTGTCTGCAATGCGGTGGTCTGG 480
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 418 TCATGCTCGACGCCTTTGCTGACGGAAGCAGCTTTATCTGTCTGCAATGCGGTGGTCTGG 477
Query 481 TGAGCATCCATAGGAGAGATGAACACTATGCGTACTGGTGTAGCAATATGTAATACAAGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGAGCATCCATAGGAGAGATGAACACTATGCGTACTGGTGTAGCAATATGTAATACAAGG 537
Query 541 ATGCTATTTTGTTGGCCATTACATGAGAATCTGCGGCAAATTGCCTTCACTGTAATATTT 600
|||||||||| | |||||||| ||||||| |||||||| ||||||||| ||||||||||
Sbjct 538 ATGCTATTTTATAGGCCATTATATGAGAAACTGCGGCATATTGCCTTCGCTGTAATATTG 597
Query 601 TGTTGCTAAATGTTGTTGATCTTTGAATGGAATGGGAGATA 641
||||||||||||||||| | ||||||||| |||||||||||
Sbjct 598 TGTTGCTAAATGTTGTTCAGCTTTGAATGCAATGGGAGATA 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5