BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47850.1
Length=2382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331197 jgi|Araly1|331197|fgenesh1_pm.C_scaffold_8000540 3048 0.0
> Ahg331197 jgi|Araly1|331197|fgenesh1_pm.C_scaffold_8000540
Length=2262
Score = 3048 bits (1650), Expect = 0.0
Identities = 2067/2270 (91%), Gaps = 22/2270 (1%)
Strand=Plus/Plus
Query 25 ATGGCACTTACCAtctcaatctcttgtttctcctctt-actttgtgtctctccttcttct 83
|||||| ||| ||| ||||||||| ||| ||||| || ||||||||||| ||||||||||
Sbjct 1 ATGGCATTTAGCATTTCAATCTCTCGTTGCTCCT-TTCACTTTGTGTCTTTCCTTCTTCT 59
Query 84 tgttctatcttccttctcctttgtttgcttctccctctccaccgtctccATCTCCCACAT 143
| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 60 TCTTCTATCTTCCTTCTCTTTTGTTTGCTTTTCCCTCTCCACTGTCTCCATCTCCCACAT 119
Query 144 CTCTAATCAGACTCTTGTATGTGCTCTCAACAACCACTCTTATCTTCAATGTTCCAGTTT 203
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 120 CTCTAATCAGACTCTTGTATGTGCTCTCACCAACCACTCTTATCTCCAATGTTCCAGTTT 179
Query 204 CCCTTTAAATTCGATTCCATTTTCTTTAACCGGTAACCTTCGAAATCGAAGGTTTTCGGG 263
|||||||||||| |||| ||| |||||||||| |||||| |||||||| |||||||| ||
Sbjct 180 CCCTTTAAATTCTATTCGATTCTCTTTAACCGATAACCTCCGAAATCGTAGGTTTTCCGG 239
Query 264 GGTTGTTTCAGGGAATGGGTTTGTGTGCGGATTGATATCGCG-GCTGGATTCCAACACTT 322
|||||| || ||||||||||| |||||||| |||| | || | |||||||||||||| ||
Sbjct 240 GGTTGTCTCCGGGAATGGGTTCGTGTGCGGGTTGAGAACG-GTGCTGGATTCCAACATTT 298
Query 323 CCACACTTCTTTGTTGGAGATTCTCTGTTGATGGAACTAATATGTTGCACAAAAGAATCT 382
|||||||||||||||||||||| |||||| | ||||| | | ||||||||||||||||||
Sbjct 299 CCACACTTCTTTGTTGGAGATTTTCTGTTAACGGAACCAGTTTGTTGCACAAAAGAATCT 358
Query 383 ACCACGGTCCTGAGCTCGAAGAGCTAGAAGCCGGGAATTTCCGCATTTGTGGAGTTGAAA 442
|||||||||||||| | |||||| |||||||||| |||| ||| |||||||||||||| |
Sbjct 359 ACCACGGTCCTGAGATAGAAGAGTTAGAAGCCGGAAATTCCCGTATTTGTGGAGTTGAGA 418
Query 443 GAGTCTCAAGGCGCCTCCGTTGCTGGCAACCGTACTATCTGCCACGGCCGGATAATTACC 502
||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||| |||
Sbjct 419 GAGTCTCAAGGAGCCTCCGTTGCTGGCAACCGTTCTATCTACCACGGTCGGATAACTACA 478
Query 503 GTTCCATTGCCTTGGGAGATAATTTTTTCTGTGGGCTATCTCAGCCACCTGGTATGATCA 562
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 479 GTTCCATTGCCTTGGGAGATAACTTTTTCTGTGGGCTATCTCAGCCACCTGGAAGGATCA 538
Query 563 G-T-T----GTGAAGGTATAGCCAAAGTGCCGAGTGGAGACCACTACATCGCGATAGCGG 616
| | | | ||||||||| |||| || ||||||||||||| ||||||||| || ||||
Sbjct 539 GCTGTGAAGGAGAAGGTATATCCAAGGTACCGAGTGGAGACCGCTACATCGCCATCGCGG 598
Query 617 CTGGATCACGACAAGCGTGTGCGATCACTGTTGACAATGATGTCGAGTGTTGGGGACAAA 676
|||||||| |||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 599 CTGGATCAAGACAAGCGTGCGCGATCACGGTTGACAATGATGTCGAGTGCTGGGGACAAA 658
Query 677 CACAGTCGCTGCCACGTGAAAAGTTCTTAGCACTAGCGGTTGGGGAAGACCGTGGTTGCG 736
| ||||| |||||| ||||||||| |||||| | || ||||||||| ||||| | ||||
Sbjct 659 CGGAGTCGTTGCCACATGAAAAGTTTTTAGCATTGGCAGTTGGGGAAAACCGTAGCTGCG 718
Query 737 GTGTTAGATGGTCTAATGGAACTGTGGTGTGTTGGGGCAACAACAACAACTTT-AGTTTG 795
|| |||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||
Sbjct 719 GTATTAGATGGTCTAATGGAACTGTGGTGTGTTGGGGAAACAACAA-AAATTTCAGTTTG 777
Query 796 CCTCAAACG-CTTAAGGACATTCATTTTACATCAATATATGCTAAAGGGCCAATGTTTTG 854
||||||| | ||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 778 CCTCAAA-GTCTTAAGGACATTCATTTCACATCAATATATGCTAAAGGGCAAATCTTTTG 836
Query 855 CGGTGTTGCCACAAGAAATTACACTCTAAT-TTGTTGGGGGAATGAGAATTTTAAATCCG 913
|||||||||||||| ||| |||||||| || ||| ||||| ||||||||||||||||| |
Sbjct 837 CGGTGTTGCCACAAAAAACTACACTCT-ATATTGCTGGGGAAATGAGAATTTTAAATCGG 895
Query 914 GTGTTTTCACTCCATTCCAAGGCCTAATTTCTCAAGTGGTAATGCCAGGACCGTGTAGAA 973
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GTGTTTTCGCTCCGTTCCAAGGCCTAATTTCTCAAGTGGTAATGCCAGGACCGTGTAGAA 955
Query 974 GAGAATGCCCTTACCGTCCATTGTCAGGATCACAGTCCTTATGCGGCAATGAGTTGATGA 1033
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 956 GAGAATGCCCTTACCGTCCATTGTCAGGTTCACAGTCATTATGCGGCAATGAATTGATGA 1015
Query 1034 TTTGCGATTTGAAAAGAA-ATGATGGAGAGTTTCCTGATACTAGGGCTCAAAACTCTAAG 1092
|||| |||||||||| || | |||||||| ||||| ||||| | ||| |||||| |||||
Sbjct 1016 TTTGTGATTTGAAAA-AAGAGGATGGAGAATTTCCAGATACAAAGGCACAAAACGCTAAG 1074
Query 1093 AACAAAACTTGGAGCAGAAGAAACATTGCGTTTCTAGTGGTCGGATGCGTTGGAACGTTT 1152
||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||||
Sbjct 1075 AACAAAACTTGGAGCAGAAGAAACATTGCGTTTCTTGTGGTTGGATGTGGTGGAACGTTT 1134
Query 1153 TCCTTGCTCCTTGTCATCAGTTTCTTGATCTTTAAAAGCCACTGTCGATGCCGTGTCCAT 1212
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1135 TCTTTGCTCCTTGTCATCAGTTTCTTGATCTTTAAAAGCCACTCTCGATGCCGTGTCCAT 1194
Query 1213 GACTCTGGACGTCTTGATGATACTAGGACAATAGACATACCCAAGCTCGAGAAGAGGCTG 1272
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 GACTCTGGACGTCTTGATGATACTAGGACAATAGACATGCCCAAGCTCGAGAAGAGGCTG 1254
Query 1273 TGCACTCTAGCAAGTTTAGGTAATC-CTGGGCAGCTAATGGAGTTCTCAATTGACGAGCT 1331
||| ||||| |||| |||| || | |||||||||| |||||||||||||||||||||||
Sbjct 1255 AGCAGTCTAGTAAGTCTAGGGAA-CACTGGGCAGCTCATGGAGTTCTCAATTGACGAGCT 1313
Query 1332 AGCTCTAGCCACGGATGGTTTCTCTGTCCGGTTTCATCTTGGTATAGGCAGCTTCGGCTC 1391
||||||||||| ||||||||||||||| ||||||| || || |||||||||||||||||
Sbjct 1314 GGCTCTAGCCACAGATGGTTTCTCTGTCAGGTTTCAGCTCGGGATAGGCAGCTTCGGCTC 1373
Query 1392 TGTTTATCAAGGTGTTTTGTCGGATGGACGTCATGTCGCAATCAAACGAGCTGAGCTAAC 1451
|||||| ||||||||||| ||||| |||||||| || || ||||||||||||||||||||
Sbjct 1374 TGTTTACCAAGGTGTTTTATCGGACGGACGTCACGTGGCCATCAAACGAGCTGAGCTAAC 1433
Query 1452 AAATCCTACATTGTCTGGGACAACGATGAGACACCGACGAGCAGATAAGGATTCAGCGTT 1511
||| ||||||||||| ||||| || |||||| ||||||||||||| ||||| || |||||
Sbjct 1434 AAACCCTACATTGTCCGGGACCACAATGAGAAACCGACGAGCAGACAAGGACTCTGCGTT 1493
Query 1512 CGTGAACGAGCTAGAGTCTATGTCGCGGCTTAACCACAAAAATCTTGTTCGACTTCTGGG 1571
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1494 CGTGAACGAGCTAGAGTCTATGTCGCGACTCAACCACAAAAATCTTGTTCGACTTCTTGG 1553
Query 1572 TTTCTATGAGGAC-ACAGAAGAGAGGATTTTGGTGTACGAGTACATGAAAAATGGATCTC 1630
|||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1554 TTTCTACGAGGATGA-AGAAGAGAGGGTTTTGGTGTACGAGTACATGAAAAATGGATCTC 1612
Query 1631 TAGCCGATCACCTTCACAATCCTCAATTTGACCCTCTTTCGTGGCAAACACGCTTGATGA 1690
| |||||||||||||| || |||||||||||||||||| |||||||||||||||| ||||
Sbjct 1613 TCGCCGATCACCTTCATAACCCTCAATTTGACCCTCTTACGTGGCAAACACGCTTAATGA 1672
Query 1691 TCGCGCTTGACGCTGCTCGTGGGATCCAATACCTTCATGAGTTTATCGTGCCTCCGGTGA 1750
|||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1673 TCGCGCTTGATGCCGCTCGTGGGATCCAATACCTCCATGAGTTTGTCGTGCCTCCGGTGA 1732
Query 1751 TCCACCGTGACATAAAGTCATCAAACATACTTTTGGACGCCACATGGACAGCCAAAGTTT 1810
| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TTCATCGTGATATAAAGTCGTCAAACATACTTTTGGACGCCACATGGACAGCCAAAGTTT 1792
Query 1811 CAGATTTCGGCCTATCTCAAATGGGTCCAACGGAAGAAGATGACGTCTCACATCTCTCTT 1870
| ||||| ||||| ||||| ||||||||||| |||||||||||||| || || ||||| |
Sbjct 1793 CGGATTTTGGCCTCTCTCAGATGGGTCCAACAGAAGAAGATGACGTGTCGCACCTCTCCT 1852
Query 1871 TACACGCTGCCGGTACATTGGGATATATCGACCCGGAGTACTACAAGTTTCAACAGCTCA 1930
||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1853 TACACGCCGCCGGTACGTTGGGCTACATCGACCCGGAGTACTACAAGTTTCAACAGCTCA 1912
Query 1931 CAACCAAGAGCGATGTTTACAGCTTTGGCGTGGTGTTGCTGGAGTTGCTGTCTGGTCACA 1990
|||| ||||| |||||||||||||| ||||| || ||||||||||| ||||| |||||||
Sbjct 1913 CAACTAAGAGTGATGTTTACAGCTTCGGCGTCGTATTGCTGGAGTTACTGTCCGGTCACA 1972
Query 1991 AAGCGATACACAATAACGAAGACGAAAACCCTAGAAACTTAGTGGAATATGTTGTACCAT 2050
||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1973 AAGCGATACACAAGAACGAAGACGAAAACCCGAGAAACGTAGTGGAATATGTTGTACCAT 2032
Query 2051 ACATTTTGCTGGATGAGGCTCATAGAATACTTGACCAGAGGATTCCACCGCCGACCCCTT 2110
|||||||||||||||| | ||||||| |||||||||||||||||||||| || || || |
Sbjct 2033 ACATTTTGCTGGATGATGTTCATAGAGTACTTGACCAGAGGATTCCACCACCAACGCCAT 2092
Query 2111 ACGAAATCGAGGCGGTGGCTCATGTCGGATACTTGGCAGCGGAGTGTTTGATGCCGTGTA 2170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 ACGAAATCGAGGCGGTGGCTCATGTCGGATACTTGGCAGCGGAGTGTTTGATGCCGTGTA 2152
Query 2171 GTCGGAAAAGGCCGTCAATGGTGGAGGTAGTCAGTAAACTAGAGAGTGCTTTGGCCGCTT 2230
| ||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 2153 GCCGGAAAAGGCCATCAATGGCGGAGGTAGTGAGTAAACTTGAGAGTGCTTTGGCCGCTT 2212
Query 2231 GTTTGACGGCTCCAAAGACGGAGACCGTATCTCGATCAAACACTTATTAG 2280
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 GTTTGACGGCTCCAAAGACGGAGACCGTATCTCGATCAAACACTTATTAG 2262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89740617220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5