BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47850.1 Length=2382 Score E Sequences producing significant alignments: (Bits) Value Ahg331197 jgi|Araly1|331197|fgenesh1_pm.C_scaffold_8000540 3048 0.0 > Ahg331197 jgi|Araly1|331197|fgenesh1_pm.C_scaffold_8000540 Length=2262 Score = 3048 bits (1650), Expect = 0.0 Identities = 2067/2270 (91%), Gaps = 22/2270 (1%) Strand=Plus/Plus Query 25 ATGGCACTTACCAtctcaatctcttgtttctcctctt-actttgtgtctctccttcttct 83 |||||| ||| ||| ||||||||| ||| ||||| || ||||||||||| |||||||||| Sbjct 1 ATGGCATTTAGCATTTCAATCTCTCGTTGCTCCT-TTCACTTTGTGTCTTTCCTTCTTCT 59 Query 84 tgttctatcttccttctcctttgtttgcttctccctctccaccgtctccATCTCCCACAT 143 | |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 60 TCTTCTATCTTCCTTCTCTTTTGTTTGCTTTTCCCTCTCCACTGTCTCCATCTCCCACAT 119 Query 144 CTCTAATCAGACTCTTGTATGTGCTCTCAACAACCACTCTTATCTTCAATGTTCCAGTTT 203 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 120 CTCTAATCAGACTCTTGTATGTGCTCTCACCAACCACTCTTATCTCCAATGTTCCAGTTT 179 Query 204 CCCTTTAAATTCGATTCCATTTTCTTTAACCGGTAACCTTCGAAATCGAAGGTTTTCGGG 263 |||||||||||| |||| ||| |||||||||| |||||| |||||||| |||||||| || Sbjct 180 CCCTTTAAATTCTATTCGATTCTCTTTAACCGATAACCTCCGAAATCGTAGGTTTTCCGG 239 Query 264 GGTTGTTTCAGGGAATGGGTTTGTGTGCGGATTGATATCGCG-GCTGGATTCCAACACTT 322 |||||| || ||||||||||| |||||||| |||| | || | |||||||||||||| || Sbjct 240 GGTTGTCTCCGGGAATGGGTTCGTGTGCGGGTTGAGAACG-GTGCTGGATTCCAACATTT 298 Query 323 CCACACTTCTTTGTTGGAGATTCTCTGTTGATGGAACTAATATGTTGCACAAAAGAATCT 382 |||||||||||||||||||||| |||||| | ||||| | | |||||||||||||||||| Sbjct 299 CCACACTTCTTTGTTGGAGATTTTCTGTTAACGGAACCAGTTTGTTGCACAAAAGAATCT 358 Query 383 ACCACGGTCCTGAGCTCGAAGAGCTAGAAGCCGGGAATTTCCGCATTTGTGGAGTTGAAA 442 |||||||||||||| | |||||| |||||||||| |||| ||| |||||||||||||| | Sbjct 359 ACCACGGTCCTGAGATAGAAGAGTTAGAAGCCGGAAATTCCCGTATTTGTGGAGTTGAGA 418 Query 443 GAGTCTCAAGGCGCCTCCGTTGCTGGCAACCGTACTATCTGCCACGGCCGGATAATTACC 502 ||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||| ||| Sbjct 419 GAGTCTCAAGGAGCCTCCGTTGCTGGCAACCGTTCTATCTACCACGGTCGGATAACTACA 478 Query 503 GTTCCATTGCCTTGGGAGATAATTTTTTCTGTGGGCTATCTCAGCCACCTGGTATGATCA 562 |||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| Sbjct 479 GTTCCATTGCCTTGGGAGATAACTTTTTCTGTGGGCTATCTCAGCCACCTGGAAGGATCA 538 Query 563 G-T-T----GTGAAGGTATAGCCAAAGTGCCGAGTGGAGACCACTACATCGCGATAGCGG 616 | | | | ||||||||| |||| || ||||||||||||| ||||||||| || |||| Sbjct 539 GCTGTGAAGGAGAAGGTATATCCAAGGTACCGAGTGGAGACCGCTACATCGCCATCGCGG 598 Query 617 CTGGATCACGACAAGCGTGTGCGATCACTGTTGACAATGATGTCGAGTGTTGGGGACAAA 676 |||||||| |||||||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct 599 CTGGATCAAGACAAGCGTGCGCGATCACGGTTGACAATGATGTCGAGTGCTGGGGACAAA 658 Query 677 CACAGTCGCTGCCACGTGAAAAGTTCTTAGCACTAGCGGTTGGGGAAGACCGTGGTTGCG 736 | ||||| |||||| ||||||||| |||||| | || ||||||||| ||||| | |||| Sbjct 659 CGGAGTCGTTGCCACATGAAAAGTTTTTAGCATTGGCAGTTGGGGAAAACCGTAGCTGCG 718 Query 737 GTGTTAGATGGTCTAATGGAACTGTGGTGTGTTGGGGCAACAACAACAACTTT-AGTTTG 795 || |||||||||||||||||||||||||||||||||| |||||||| || ||| |||||| Sbjct 719 GTATTAGATGGTCTAATGGAACTGTGGTGTGTTGGGGAAACAACAA-AAATTTCAGTTTG 777 Query 796 CCTCAAACG-CTTAAGGACATTCATTTTACATCAATATATGCTAAAGGGCCAATGTTTTG 854 ||||||| | ||||||||||||||||| |||||||||||||||||||||| ||| ||||| Sbjct 778 CCTCAAA-GTCTTAAGGACATTCATTTCACATCAATATATGCTAAAGGGCAAATCTTTTG 836 Query 855 CGGTGTTGCCACAAGAAATTACACTCTAAT-TTGTTGGGGGAATGAGAATTTTAAATCCG 913 |||||||||||||| ||| |||||||| || ||| ||||| ||||||||||||||||| | Sbjct 837 CGGTGTTGCCACAAAAAACTACACTCT-ATATTGCTGGGGAAATGAGAATTTTAAATCGG 895 Query 914 GTGTTTTCACTCCATTCCAAGGCCTAATTTCTCAAGTGGTAATGCCAGGACCGTGTAGAA 973 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 GTGTTTTCGCTCCGTTCCAAGGCCTAATTTCTCAAGTGGTAATGCCAGGACCGTGTAGAA 955 Query 974 GAGAATGCCCTTACCGTCCATTGTCAGGATCACAGTCCTTATGCGGCAATGAGTTGATGA 1033 |||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 956 GAGAATGCCCTTACCGTCCATTGTCAGGTTCACAGTCATTATGCGGCAATGAATTGATGA 1015 Query 1034 TTTGCGATTTGAAAAGAA-ATGATGGAGAGTTTCCTGATACTAGGGCTCAAAACTCTAAG 1092 |||| |||||||||| || | |||||||| ||||| ||||| | ||| |||||| ||||| Sbjct 1016 TTTGTGATTTGAAAA-AAGAGGATGGAGAATTTCCAGATACAAAGGCACAAAACGCTAAG 1074 Query 1093 AACAAAACTTGGAGCAGAAGAAACATTGCGTTTCTAGTGGTCGGATGCGTTGGAACGTTT 1152 ||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||| Sbjct 1075 AACAAAACTTGGAGCAGAAGAAACATTGCGTTTCTTGTGGTTGGATGTGGTGGAACGTTT 1134 Query 1153 TCCTTGCTCCTTGTCATCAGTTTCTTGATCTTTAAAAGCCACTGTCGATGCCGTGTCCAT 1212 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1135 TCTTTGCTCCTTGTCATCAGTTTCTTGATCTTTAAAAGCCACTCTCGATGCCGTGTCCAT 1194 Query 1213 GACTCTGGACGTCTTGATGATACTAGGACAATAGACATACCCAAGCTCGAGAAGAGGCTG 1272 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1195 GACTCTGGACGTCTTGATGATACTAGGACAATAGACATGCCCAAGCTCGAGAAGAGGCTG 1254 Query 1273 TGCACTCTAGCAAGTTTAGGTAATC-CTGGGCAGCTAATGGAGTTCTCAATTGACGAGCT 1331 ||| ||||| |||| |||| || | |||||||||| ||||||||||||||||||||||| Sbjct 1255 AGCAGTCTAGTAAGTCTAGGGAA-CACTGGGCAGCTCATGGAGTTCTCAATTGACGAGCT 1313 Query 1332 AGCTCTAGCCACGGATGGTTTCTCTGTCCGGTTTCATCTTGGTATAGGCAGCTTCGGCTC 1391 ||||||||||| ||||||||||||||| ||||||| || || ||||||||||||||||| Sbjct 1314 GGCTCTAGCCACAGATGGTTTCTCTGTCAGGTTTCAGCTCGGGATAGGCAGCTTCGGCTC 1373 Query 1392 TGTTTATCAAGGTGTTTTGTCGGATGGACGTCATGTCGCAATCAAACGAGCTGAGCTAAC 1451 |||||| ||||||||||| ||||| |||||||| || || |||||||||||||||||||| Sbjct 1374 TGTTTACCAAGGTGTTTTATCGGACGGACGTCACGTGGCCATCAAACGAGCTGAGCTAAC 1433 Query 1452 AAATCCTACATTGTCTGGGACAACGATGAGACACCGACGAGCAGATAAGGATTCAGCGTT 1511 ||| ||||||||||| ||||| || |||||| ||||||||||||| ||||| || ||||| Sbjct 1434 AAACCCTACATTGTCCGGGACCACAATGAGAAACCGACGAGCAGACAAGGACTCTGCGTT 1493 Query 1512 CGTGAACGAGCTAGAGTCTATGTCGCGGCTTAACCACAAAAATCTTGTTCGACTTCTGGG 1571 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 1494 CGTGAACGAGCTAGAGTCTATGTCGCGACTCAACCACAAAAATCTTGTTCGACTTCTTGG 1553 Query 1572 TTTCTATGAGGAC-ACAGAAGAGAGGATTTTGGTGTACGAGTACATGAAAAATGGATCTC 1630 |||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1554 TTTCTACGAGGATGA-AGAAGAGAGGGTTTTGGTGTACGAGTACATGAAAAATGGATCTC 1612 Query 1631 TAGCCGATCACCTTCACAATCCTCAATTTGACCCTCTTTCGTGGCAAACACGCTTGATGA 1690 | |||||||||||||| || |||||||||||||||||| |||||||||||||||| |||| Sbjct 1613 TCGCCGATCACCTTCATAACCCTCAATTTGACCCTCTTACGTGGCAAACACGCTTAATGA 1672 Query 1691 TCGCGCTTGACGCTGCTCGTGGGATCCAATACCTTCATGAGTTTATCGTGCCTCCGGTGA 1750 |||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 1673 TCGCGCTTGATGCCGCTCGTGGGATCCAATACCTCCATGAGTTTGTCGTGCCTCCGGTGA 1732 Query 1751 TCCACCGTGACATAAAGTCATCAAACATACTTTTGGACGCCACATGGACAGCCAAAGTTT 1810 | || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1733 TTCATCGTGATATAAAGTCGTCAAACATACTTTTGGACGCCACATGGACAGCCAAAGTTT 1792 Query 1811 CAGATTTCGGCCTATCTCAAATGGGTCCAACGGAAGAAGATGACGTCTCACATCTCTCTT 1870 | ||||| ||||| ||||| ||||||||||| |||||||||||||| || || ||||| | Sbjct 1793 CGGATTTTGGCCTCTCTCAGATGGGTCCAACAGAAGAAGATGACGTGTCGCACCTCTCCT 1852 Query 1871 TACACGCTGCCGGTACATTGGGATATATCGACCCGGAGTACTACAAGTTTCAACAGCTCA 1930 ||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 1853 TACACGCCGCCGGTACGTTGGGCTACATCGACCCGGAGTACTACAAGTTTCAACAGCTCA 1912 Query 1931 CAACCAAGAGCGATGTTTACAGCTTTGGCGTGGTGTTGCTGGAGTTGCTGTCTGGTCACA 1990 |||| ||||| |||||||||||||| ||||| || ||||||||||| ||||| ||||||| Sbjct 1913 CAACTAAGAGTGATGTTTACAGCTTCGGCGTCGTATTGCTGGAGTTACTGTCCGGTCACA 1972 Query 1991 AAGCGATACACAATAACGAAGACGAAAACCCTAGAAACTTAGTGGAATATGTTGTACCAT 2050 ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 1973 AAGCGATACACAAGAACGAAGACGAAAACCCGAGAAACGTAGTGGAATATGTTGTACCAT 2032 Query 2051 ACATTTTGCTGGATGAGGCTCATAGAATACTTGACCAGAGGATTCCACCGCCGACCCCTT 2110 |||||||||||||||| | ||||||| |||||||||||||||||||||| || || || | Sbjct 2033 ACATTTTGCTGGATGATGTTCATAGAGTACTTGACCAGAGGATTCCACCACCAACGCCAT 2092 Query 2111 ACGAAATCGAGGCGGTGGCTCATGTCGGATACTTGGCAGCGGAGTGTTTGATGCCGTGTA 2170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2093 ACGAAATCGAGGCGGTGGCTCATGTCGGATACTTGGCAGCGGAGTGTTTGATGCCGTGTA 2152 Query 2171 GTCGGAAAAGGCCGTCAATGGTGGAGGTAGTCAGTAAACTAGAGAGTGCTTTGGCCGCTT 2230 | ||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 2153 GCCGGAAAAGGCCATCAATGGCGGAGGTAGTGAGTAAACTTGAGAGTGCTTTGGCCGCTT 2212 Query 2231 GTTTGACGGCTCCAAAGACGGAGACCGTATCTCGATCAAACACTTATTAG 2280 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2213 GTTTGACGGCTCCAAAGACGGAGACCGTATCTCGATCAAACACTTATTAG 2262 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89740617220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5