BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47860.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494828 jgi|Araly1|494828|fgenesh2_kg.8__644__AT5G47860.1 1929 0.0
Ahg494829 jgi|Araly1|494829|fgenesh2_kg.8__645__AT5G47870.1 67.6 3e-10
> Ahg494828 jgi|Araly1|494828|fgenesh2_kg.8__644__AT5G47860.1
Length=1380
Score = 1929 bits (1044), Expect = 0.0
Identities = 1229/1318 (93%), Gaps = 13/1318 (1%)
Strand=Plus/Plus
Query 138 ATGGCTACATGTTCCCTCTTACCACCACCGTCTTTTTCTCCGCGCCGGCGATTCTGTAGT 197
|||||||| |||||||||| | |||||||||| ||||| |||||||||||||||||
Sbjct 1 ATGGCTACGTGTTCCCTCTGGGCGTCACCGTCTTTCTCTCCCCGCCGGCGATTCTGTAGC 60
Query 198 TTTTCTCACAATCGCCGGTCTCTACCTTCAATATTCAGTTTCAACAAAGAGCGTGTCTCA 257
|||||||||||||||| ||||||| ||||| | ||||||||| ||||||||||||||||
Sbjct 61 TTTTCTCACAATCGCCCGTCTCTATCTTCAGTGTTCAGTTTCCGCAAAGAGCGTGTCTCA 120
Query 258 CGAAGAGT-CTTCTGTAGCTCCAAAGAGAACGATATAAACAGAGATCGGAATCAGTCTAC 316
|||||||| ||| ||||||| | | ||||||| |||||||||||| ||| |||||
Sbjct 121 CGAAGAGTCCTT-TGTAGCTACGAGGAGAACG------ACAGAGATCGGACTCAATCTAC 173
Query 317 AGGAATTCAAGTCTACGGCGAAATCGAGAGGTTATTAACAGAGACTG-TAAAAAATTCTC 375
|||||||||||||||||||| ||||| |||||||| |||||||||| |||| || ||||
Sbjct 174 CGGAATTCAAGTCTACGGCGAGATCGAAAGGTTATTGACAGAGACTGTTAAACAA-TCTC 232
Query 376 AGAGTAGCTCCGGTGGATCCTCTGATTGGTCAGAAGTTGAGGGAGCATGGGTGCTGAAAC 435
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 233 AGAGTAGTTCCGGTGGATCCTCTGATTGGTCAGAAGTCGAGGGAGCATGGGTGCTTAAAC 292
Query 436 CAAGAAACTCGAAACCGAAGATGGTTGTTCATTTCATTGGCGGTATATTTGTCGGTGCAG 495
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 293 CAAGAAACTCGAAACCGAAGATGGTTGTTCATTTCATTGGCGGTATATTTGTTGGTGCTG 352
Query 496 CACCACAGCTTACTTATCGATTGTTTCTCGAGAGATTAGCGGAGAAGGATGTTTTGGTTA 555
||||||||||||| |||||||||||||| |||| |||||| ||||||||| |||| ||||
Sbjct 353 CACCACAGCTTACCTATCGATTGTTTCTTGAGAAATTAGCAGAGAAGGATATTTTAGTTA 412
Query 556 TTGCGACACCATATGCTAGTGGTTTTGACCACTTCAATATTGCAGATGAAGTACAATTTA 615
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCGCGACACCCTATGCTAGTGGTTTTGACCACTTCAATATTGCAGATGAAGTACAATTTA 472
Query 616 AGTATGATAGATGTTGCCGATCTCTACAAGAAGA-AGTGCAGGATCTTCCGTCTTTTGGG 674
||| |||||| || |||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 473 AGTTTGATAGGTGCTGCCGATCTCTACAAGAA-ATAGTGCAGGATCTTCCATCTTTTGGG 531
Query 675 ATCGGTCATTCACTGGGATCTGTTATTCACCTTCTGATTGGATCAAGGTATGCTGTTCAG 734
|| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 532 ATTGGTCATTCACTGGGATCCGTCATTCACCTTCTGATTGGATCAAGGTATGCCGTTCAG 591
Query 735 CGAAATGGGAACGTATTTATGGCATTCAACAACAAGGAAGCAAGCTTAGCTATTCCTTTG 794
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 592 CGAAATGGGAATGTATTTATGGCATTCAATAACAAGGAAGCGAGCTTAGCTATTCCTCTG 651
Query 795 TTCTCCCCAGTTCTTGTCCCGATGGCTCAAAGCCTTGGACCACTGTTGTCACAGGTGGCA 854
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 652 TTCTCCCCAGTTCTTGTCCCGATGGCCCAAAGACTTGGACCACTGTTATCACAGGTGGCA 711
Query 855 ACATCCCCAACAATCCGCCTTGGGGCAGAGATGACGCGAAAGCAATTAGAAACGCTTAGC 914
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 712 ACATCCCCAACAATCCGCCTTGGGGCAGAGATGACCCGAAAGCAATTAGAAACGCTTAGC 771
Query 915 CCTCCCATCATGAAGCAAATTCTGCCTTTAGTGGAACAGCTCCCTCCCTTGTACATGGAC 974
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 772 CCTCCCATCATGAAGCAAATTCTTCCATTAGTGGAACAGCTCCCTCCCTTGTACATGGAC 831
Query 975 TTAGTAAAGGGAAGAGAAGATTTTGTTCCAAAACCAGAAGAAACAAGACGCCTTATAAGA 1034
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 832 TTAGTAAAGGGTAGAGAAGATTTTATTCCAAAACCAGAAGAAACAAGACGCCTTATAAGA 891
Query 1035 TCCTACTATGGAATCTCTAGGAATCTGTTGATAAAATTCGAGGATGATTCAATAGATGAA 1094
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 892 TCCTACTATGGAATCTCTAGGAATCTGTTGATAAAGTTTGAGGATGATTCAATAGATGAA 951
Query 1095 ACATCAATCCTAGCTCAGGTGCTTGGTGTGGAATCATCCATAAGCTCAAAGCTAGACATG 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ACATCAATCCTAGCTCAGGTGCTTGGTGTGGAATCATCCATAAGCTCAAAGCTAGACATG 1011
Query 1155 TCTATCCGTACACTGCCCGGAGATCACGGTCTCCCTCTGCAACAGGCTCTTCCGGATGTT 1214
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TCTATCCGTACTCTTCCAGGAGATCACGGTCTCCCTCTGCAACAGGCTCTTCCGGATGTT 1071
Query 1215 CCACCAGGAATGGCAGAAGCGGTGAATCGAGGAAGTGAGTTTTTAGCGAATATTGCTGTC 1274
|||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1072 CCACCAGGAATGGCAGAAGCAGTGAACCGAGGAAGTGAGTTTTTAGCAAATATTGCTGTT 1131
Query 1275 GGGACTCCGTGGGAATCTATGGCTAAAGAGGTTGGAGGTTCGCTGGGAATGGACTCGAAG 1334
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1132 GGGACTCCATGGGAATCTATGGCTAAAGAGGTTGGAGGCTCGCTGGGAATGGACTCGAAG 1191
Query 1335 ATCCTTCGTGCTGACATGTCCAAAGATCTTGCGCAGCTCGTTGATGCAATCACTTCTTGG 1394
|||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1192 ATCCTTCGTGCTGACAAGTCCAAAGACCTTGCGCAGCTCATCGATGCAATCACTTCTTGG 1251
Query 1395 ATGATTTCAAATATGGGTCCAAAGCTTCTGAGACCATAATGTTTTCTCATGTACACAA 1452
||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1252 ATGGCTTCAAATATGGGTCCAAAACTTCTGAGACCATAATGTTT-CTCATGTACACAA 1308
> Ahg494829 jgi|Araly1|494829|fgenesh2_kg.8__645__AT5G47870.1
Length=853
Score = 67.6 bits (36), Expect = 3e-10
Identities = 48/53 (91%), Gaps = 4/53 (8%)
Strand=Plus/Minus
Query 1495 TAATGTAA-TGTAACTGTATATAT-TATAACATGAAGAGTTTGGTTATACATA 1545
|||||||| ||| | | ||||||| ||||||||||||||||||||||||||||
Sbjct 852 TAATGTAACTGT-A-TATATATATATATAACATGAAGAGTTTGGTTATACATA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5