BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47870.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494829 jgi|Araly1|494829|fgenesh2_kg.8__645__AT5G47870.1 1181 0.0
> Ahg494829 jgi|Araly1|494829|fgenesh2_kg.8__645__AT5G47870.1
Length=853
Score = 1181 bits (639), Expect = 0.0
Identities = 791/859 (92%), Gaps = 32/859 (4%)
Strand=Plus/Plus
Query 9 CTTCTCCTGTTTTCCTCTTCCCCAACTCTCAATTTTGCTCAGACAAAAAATCAATGGCTT 68
|||||| |||||||||||| ||||| || |||||||| |||| |||||||||||||
Sbjct 3 CTTCTCATGTTTTCCTCTT----AACTCACAGTTTTGCTCCGACACGAAATCAATGGCTT 58
Query 69 TGCAAGTGCAGCAAACTTCAGCAGCCTTCACAATCTCCTCACCATCCACCGCCGCTGCAC 128
||||| ||||||| || ||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 59 TGCAAATGCAGCAGACCTCAACGGCCTTCACAATCTCCGCACCATCCACCGCCGCTGCAC 118
Query 129 GCATCAAACTCTCCCCTTTCAGAACCGT----G---G-CGGTTAA---C----CGCGGAG 173
|||||||||||||||||||||||||||| | | ||||||| | |||||||
Sbjct 119 GCATCAAACTCTCCCCTTTCAGAACCGTGGCGGTTCGCCGGTTAACGGCGAATCGCGGAG 178
Query 174 TTAGATGCAGCGGC----G-GT-GGAGTCGGAGGCGGAGATGCCGGGAAGAAAAAAGCAG 227
|||||||||||||| | || ||||||||||| ||||| | ||||||||||||||||
Sbjct 179 TTAGATGCAGCGGCGGGGGAGTAGGAGTCGGAGGTGGAGACGTGGGGAAGAAAAAAGCAG 238
Query 228 TTCCTAATTCGAATTATGTAGTTCCTATTGACAAATTCTCGTCTTCTTCGTCGATTACTA 287
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 TTCCTAATTCGAATTATGTAGTTCCTATTGACAAATTCTCGTCGTCTTCGTCGATTACTA 298
Query 288 GGCCTTTGATTGAGATACTTCGTGACCTTAATAAGAAGATTCCTGATAACATTGTTAAGA 347
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 299 GGCCTTTGATTGAGATACTTCGTGACCTTAACAAAAAGATTCCTGATAACATTGTTAAGA 358
Query 348 GTCATGATCCTCCTTCTACTTCTGCTGCTACTTCTGGTTTTATCCCTTGGTACCATGCAA 407
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 GTCATGATCCTCCCTCTACTTCTGCTG---CTTCTGGTTTTATCCCTTGGTACCATGCAA 415
Query 408 ATCGGATGCTTAGCTTCTATGCTCCTGGTTGGTGTGGTGAAGTTAGAGATGTTATTTTCT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATCGGATGCTTAGCTTCTATGCTCCTGGTTGGTGTGGTGAAGTTAGAGATGTTATTTTCT 475
Query 468 CTGAGAATGGAAATGTTACTGTTGTTTATCGTCTCACTATTCGTGGCTCTGATGGTGAGG 527
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 CTGAGAATGGTAATGTTACTGTTGTTTATCGTCTCACCATTCGTGGCTCTGATGGTGAGG 535
Query 528 CACATCGTGAATCAACTGGGACAGTAACGACGACTGATGATCACATCGAGGATCCAGTTA 587
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 536 CACATCGTGAATCCACTGGGACAGTAACGACGACTGATGATCACATTGAGGATCCAGTTA 595
Query 588 CTGCAGCTGAGGAAATAGCATTCTGCAGAGCATGTGCTCGATTTGGTCTCGGCTTGTATC 647
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 596 CTGCAGCTGAGGAAATAGCATTCTGCAGAGCATGTGCACGATTTGGTCTCGGCTTGTATC 655
Query 648 TATACCACGAATAGTTCACCGATCATATCAAGTTTCCTTACTGTTTTTCAAGACCCTCAA 707
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 656 TATACCACGAATAGTTCACCGATCATATCAAGTGTGCTTACTGTTTTTCAAGACCCTCAA 715
Query 708 TTCCGTGATCTGTTTGTTTTTTCTTCCTTCTTTTTGACATCCTTGTGTTATCTAGAGTAC 767
||| || ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 716 TTCTGTTATCTGTTTGTTATTTCTTCCTTCTTTTTGACATCCTTGTGTGATCTAGGGTAC 775
Query 768 CAAAACATGCAATTAACAGGAGTTTTTATGTATAACCAAACTCTTCATGTTATA-ATATA 826
|||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 CAAAACATGCTATCGACAGGAGTTTTTATGTATAACCAAACTCTTCATGTTATATATATA 835
Query 827 TACAGTTACA-TTACATTA 844
|| | | ||| ||||||||
Sbjct 836 TATA-T-ACAGTTACATTA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5