BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47880.1
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494831 jgi|Araly1|494831|fgenesh2_kg.8__647__AT5G47880.2 2290 0.0
Ahg920157 jgi|Araly1|920157|scaffold_101438.1 896 0.0
> Ahg494831 jgi|Araly1|494831|fgenesh2_kg.8__647__AT5G47880.2
Length=1711
Score = 2290 bits (1240), Expect = 0.0
Identities = 1400/1479 (95%), Gaps = 3/1479 (0%)
Strand=Plus/Plus
Query 1 ATACAGTAAAGAATATAATAAGTTGTCGAAGGCTTGAGCGTTGTTCCTTC-TTCTTCAGG 59
||||| ||||||||| || |||||||| |||||||||||||||||||||| |||||||||
Sbjct 1 ATACAATAAAGAATAGAAAAAGTTGTCCAAGGCTTGAGCGTTGTTCCTTCTTTCTTCAGG 60
Query 60 TTTTTGTTCTATTGTTAAGATGGGAGACAAAAACGATGACGACAAGAACATTGAGATATG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTTGTTCTATTGTTAAGATGGGAGACAAAAACGATGACGACAAGAACATTGAGATATG 120
Query 120 GAAGATTAAGAAGCTGATCAAATCACTTGAAGCTGCTAGGGGTAATGGAACCAGCATGAT 179
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 121 GAAGATTAAGAAGCTGATCAAATCCCTTGAAGCTGCTAGGGGTAATGGAACTAGCATGAT 180
Query 180 CTCACTCATCATGCCTCCGCGTGATCAGGTCTCTCGTGTTACCAAGATGTTGGGTGATGA 239
||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CTCTCTTATCATGCCTCCACGTGATCAGGTCTCTCGTGTTACTAAGATGTTGGGTGATGA 240
Query 240 GTATGGAACCGCGTCAAACATCAAGAGCAGAGTCAATCGTCAATCTGTTTTGGGGGCCAT 299
||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 241 GTATGGAACTGCGTCGAACATCAAGAGCAGAGTCAATCGCCAGTCTGTTTTGGGTGCCAT 300
Query 300 AACTTCTGCTCAGCAAAGGTTGAAACTTTACAACAGGGTCCCTCCTAATGGTCTTGTACT 359
||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct 301 AACATCTGCTCAGCAAAGGCTGAAACTTTATAACAGGGTCCCTCCTAATGGTCTTGTGCT 360
Query 360 CTATACTGGAACCATTGTTAATGAGGATGGTAAGGAGAAGAAGGTTACTATTGACTTTGA 419
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 ATATACCGGAACCATTGTGAATGAGGAAGGTAAGGAGAAGAAGGTTACTATTGACTTTGA 420
Query 420 GCCTTTCAGACCCATCAATGCTTCTCTCTACCTTTGTGACAACAAGTTTCACACGGAAGC 479
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 421 GCCTTTCAGACCCATCAATGCTTCTCTCTACCTCTGTGACAACAAGTTTCATACGGAAGC 480
Query 480 TTTGAATGAATTGTTGGAGTCTGATGACAAGTTTGGTTTCATTGTAATGGATGGAAACGG 539
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 TTTGAATGAATTGCTGGAGTCTGATGACAAGTTTGGCTTCATTGTAATGGATGGAAACGG 540
Query 540 GACTCTCTTTGGAACTCTTAGTGGTAACACCCGTGAGGTACTTCACAAGTTCTCTGTTGA 599
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 541 GACTCTCTTTGGAACTCTGAGTGGTAATACCCGTGAGGTGCTTCACAAGTTCTCTGTTGA 600
Query 600 TCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCTCTTCGTTTTGCCCGTCTCCGTAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCTCTTCGTTTTGCCCGTCTCCGTAT 660
Query 660 GGAGAAGCGTCACAATTATGTTAGGAAGACTGCTGAGCTCGCCACACAGTACTACATCAA 719
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 661 GGAGAAGCGTCACAATTATGTGAGGAAGACCGCTGAGCTCGCCACGCAGTACTACATCAA 720
Query 720 TCCTGCTACAAGTCAGCCTAATGTGTCTGGACTGATTCTTGCTGGTTCAGCAGATTTCAA 779
|||||| ||||||||||| ||||||||||| || || ||||| |||||||||||||||||
Sbjct 721 TCCTGCAACAAGTCAGCCGAATGTGTCTGGGCTAATACTTGCCGGTTCAGCAGATTTCAA 780
Query 780 GACTGAGTTGAGTCAGTCTGATATGTTTGATCCCCGACTGGCTGCGAAGATACTGAATGT 839
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 781 GACTGAGTTGAGTCAGTCAGATATGTTTGATCCCCGGCTGGGTGCGAAGATACTGAATGT 840
Query 840 GGTGGATGTATCATATGGAGGAGAAAATGGTTTTAATCAAGCTATTGAGCTGTCAGCTGA 899
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 841 CGTGGATGTATCGTATGGAGGAGAAAATGGTTTCAATCAGGCTATTGAGCTGTCAGCTGA 900
Query 900 AATCCTTGCGAATGTGAAGTTTATCCAAGAGAAGCGTCTGATTGGGAAGTACTTTGAGGA 959
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 901 AATTCTGGCGAATGTGAAGTTCATCCAAGAGAAGCGTCTGATTGGGAAGTACTTTGAGGA 960
Query 960 GATAAGCCAGGACACGGGGAAGTATGTGTTTGGTGTGGAAGATACGTTGAACGCTTTGGA 1019
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 961 GATAAGCCAGGACACAGGGAAGTATGTGTTTGGTGTGGAAGATACATTGAATGCTTTGGA 1020
Query 1020 GTCTGGTGCTATTGAGACACTGATTGTATGGGAAAATCTCGATATCAACAGATATGTGAT 1079
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTCGGGTGCTATAGAGACGCTGATTGTATGGGAAAATCTCGATATCAACAGATATGTGAT 1080
Query 1080 GAAGAACAGTGCGACTGGTGAAACTGTGATCAAACACCTGAACAAGGAACAAGAAGCCAA 1139
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1081 GAAGAACAGTGCGACTGGTGAAACTGTGATCAAGCACCTGAACAAGGAACAGGAAGCCAA 1140
Query 1140 CACTGAGAACTTCAAAGTA-GCCGACAGTGACTTGGCTTTGGACGTGGAGGAGAAGCTGT 1198
||| ||||| ||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 1141 CACGGAGAATTTCAAAGTAAGC-GACAGCGACTTGGCTTTGGATGTGGAGGAGAAGCTGT 1199
Query 1199 CGTTACTGGAGTGGCTTGCCAATGAGTACAGGCGTTTTGGTTGTGCGTTAGAGTTTGTGA 1258
|||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||
Sbjct 1200 CGTTACTGGAGTGGCTGGCGAACGAGTACAGGCGTTTTGGTTGTGCGCTAGAGTTTGTGA 1259
Query 1259 CCAACAAGTCACAGGAAGGTTCTCAGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATAC 1318
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CGAACAAATCACAGGAAGGTTCTCAGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATAC 1319
Query 1319 TTCGTTACCAGCTTGACATGACTGCCTTTGATTCCGAGGATGGAGAAGCTCTTGATGATG 1378
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1320 TTCGTTACCAGCTTGACATGACTGCCTTTGATTCCGAGGATGGAGATTTTGTTGATGATG 1379
Query 1379 ATTCGGAATGACAATCAATCAAATCCTCACCATCGCTGGTTGGGGAAGATGGCGCTCCGC 1438
||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1380 ATTCGGAATAACAATCAATCAAATCCTCACCATCGCTGGTTGGGGAAGATGGCACACTGC 1439
Query 1439 CATGCCTGAACCAGCTTGCGCGGGCTGTCGGGGTCGCGC 1477
||||||||||||||| |||||||||||||||||||||||
Sbjct 1440 CATGCCTGAACCAGCCTGCGCGGGCTGTCGGGGTCGCGC 1478
Score = 163 bits (88), Expect = 4e-39
Identities = 124/140 (89%), Gaps = 8/140 (6%)
Strand=Plus/Plus
Query 1518 AGGT-GATGAATGAAGGAACATGTGGAGAGTGAAGAAGCCTTGGCTTTGGTAGCGTTGTT 1576
|||| || ||||||||||||||||||||||||||| |||||| ||| |||| |||||||
Sbjct 1579 AGGTGGA-GAATGAAGGAACATGTGGAGAGTGAAGTAGCCTT--CTTGGGTAACGTTGTT 1635
Query 1577 GGTGCCTAGACATTTATGGAGTTTTATTTTGAGTTGGTGTTTCTTTAATAATTTACTTTG 1636
|||| | | ||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1636 GGTGTTT-G-CAT--ATGGAGTTTTCTTTTGAGTTGGTGTTTCTTTAATAATTTACATTG 1691
Query 1637 GTCAGTTTTATTTCAGAATT 1656
|||||||||||||||| |||
Sbjct 1692 GTCAGTTTTATTTCAGTATT 1711
> Ahg920157 jgi|Araly1|920157|scaffold_101438.1
Length=1346
Score = 896 bits (485), Expect = 0.0
Identities = 1011/1261 (80%), Gaps = 52/1261 (4%)
Strand=Plus/Plus
Query 105 GAACATTGAGATATGGAAGATTAAGAAGCTGATCAAATCACTTGAAGCTGCTAGGGGTAA 164
|||||| ||||| |||||||||||||| || ||||| ||||||| | ||||| |||||
Sbjct 41 GAACATCGAGATCTGGAAGATTAAGAAACTAATCAAGGGACTTGAATCAGCTAGAGGTAA 100
Query 165 TGGAACCAGCATGATCTCACTCATCATGCCTCCGCGTGATCAGGTCTCTCGTGTTACCAA 224
|||||| || |||||||| || || |||||||| |||||||| || |||||||| || ||
Sbjct 101 TGGAACGAGTATGATCTCTCTTATTATGCCTCCTCGTGATCAAGTATCTCGTGTCACAAA 160
Query 225 GATG-TTGGGTGATGAGTATGGAACCGCGTCAAACATCAAGAG-CAGAGTCAATCGTCAA 282
|||| || |||||||| |||||||| || |||||||| ||||| | ||||||||||||||
Sbjct 161 GATGCTT-GGTGATGAATATGGAACTGCTTCAAACATTAAGAGTC-GAGTCAATCGTCAA 218
Query 283 TCTGTTTTGGGGGCCATAACTTCTGCTCAGCAAAGGTTGAAACTTTACAACAGGGTCCCT 342
||||||||| ||||| ||||||||||| ||||||||||| |||||||||| ||| |||
Sbjct 219 TCTGTTTTGTCTGCCATTACTTCTGCTCAACAAAGGTTGAAGCTTTACAACAAGGTTCCT 278
Query 343 CCTAATGGTCTTGTACTCTATACTGGAACCATTGTTAATGAGGATGGTAAGGAGAAGAAG 402
||||||||||||| |||||||| || || ||||||||||| |||||||| ||||||||
Sbjct 279 ACTAATGGTCTTGTTCTCTATACCGGCACTATTGTTAATGATGATGGTAAAGAGAAGAAA 338
Query 403 GTTA-CTATTGACTTT-GAG-CCTTTCAGACCCATCAATGCTT-CTCTCTACCTTTGTGA 458
|| | || |||| ||| ||| ||||| || || || || |||| || | |||||||||||
Sbjct 339 GTCACCT-TTGA-TTTCGAGCCCTTT-AGGCCGATTAACGCTTCCT-TGTACCTTTGTGA 394
Query 459 CAACAAGTTTCACACGGAAGCTTTGAATGA-ATTGTTGGAGTCTGATGACAAGTTTGGTT 517
||||||||| || || || || ||||| || || || ||||||||||||||||||||||
Sbjct 395 CAACAAGTTCCATACCGAGGCATTGAACGAGCTTCTT-GAGTCTGATGACAAGTTTGGTT 453
Query 518 TCATTGTAATGGATGGAAACGGGACTCTCTTTGGAACTCTT-AGTGGTAACACCCGTGAG 576
||||||| |||||||| || ||||| || ||||| ||| || ||||| || || | |||
Sbjct 454 TCATTGTTATGGATGGTAATGGGACACTGTTTGGTACT-TTGAGTGGGAATACTAGAGAG 512
Query 577 GTACTTCACAAGTTCT-CTGTTGATCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGC 635
|| ||||| ||||| | |||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct 513 GTTCTTCATAAGTT-TACTGTTGATCTCCCGAAGAAGCACGGTAGAGGAGGACAATCTGC 571
Query 636 TCTTCGTTTTGCCCGTCTCCGTATGGAGAAGCGTCACAATTATGTTAGGAAGACTGCTGA 695
||||||||||| || || | ||||||||| | ||||||||||||||||| || |||||
Sbjct 572 GCTTCGTTTTGCTCGACTTAGGATGGAGAAGAGACACAATTATGTTAGGAAAACCGCTGA 631
Query 696 GCTCGCCACACAGTACTACATCAATCCTGCTACAAGTCAGCCTAATGTGTCTGGACTGAT 755
||| || ||||||| ||||||||||| ||||| |||||||||||||| ||||| |||||
Sbjct 632 GCTTGCTACACAGTTTTACATCAATCCAGCTACGAGTCAGCCTAATGTCTCTGGTCTGAT 691
Query 756 TCTTGCTGGTTCAGCAGATTTCAAGACTGAGTTGAGTCAGTCTGA-TATGTTTGATCCCC 814
|||||||||||||| ||||| || |||||| | ||||||||||| | |||||||||| |
Sbjct 692 CCTTGCTGGTTCAGCTGATTTTAAAACTGAGCTCAGTCAGTCTGAGT-TGTTTGATCCTC 750
Query 815 GACTGGCT-GCGAAGATACTGAATGTGGTGGATGTATCATATGGAGGAGAAAATGGTTTT 873
| || | || |||||| ||||||| || ||||| || || ||||| ||||| |||||
Sbjct 751 GTCTT-CAAGCTAAGATATTGAATGTTGTCGATGTTTCTTACGGAGGTGAAAACGGTTTC 809
Query 874 AATCAAGCTATTGAGCTGTCAGCTGAAATCCT-TGCGAATGTGAAGTTTATCCAAGAGAA 932
|| ||||||||||||||||| ||||| || || | | ||||||||||| || || |||||
Sbjct 810 AACCAAGCTATTGAGCTGTCTGCTGAGATTCTAT-CAAATGTGAAGTTCATACAGGAGAA 868
Query 933 GCGTCTGATTGGGAAGTACTTTGAGGAGATAAGCCAGGACACGGGGAAGTATGTGTTT-G 991
| ||||||||||||||||||||||||||||| || || || ||||| || || ||| |
Sbjct 869 GAAACTGATTGGGAAGTACTTTGAGGAGATAAGTCAAGATACCGGGAAATACGT-TTTCG 927
Query 992 GTGTGGAAGATACGT-TGAACGCTTTGGAGTCTGG-TGCTATTGAGACACTGATTGTATG 1049
||||||| ||||| | | || ||| | || ||| |||||| || || || || || ||
Sbjct 928 GTGTGGAGGATAC-TCTAAAGGCTCTAGAAA-TGGGTGCTATCGAAACCCTTATCGTGTG 985
Query 1050 GGAAAATCTCGATATCAACAGATATGTGATGAAGAACAGTGCGACTGGTGAAACTG-TGA 1108
||| ||||| ||||| ||||| || | | | |||||||| |||| || |||| || ||
Sbjct 986 GGAGAATCTGGATATAAACAGGTACGAGCTAAAGAACAGCACGACAGGAGAAA-TGGTGG 1044
Query 1109 TCAAACACCT-GA-ACAAGGAACAAGAAGCCA-ACACTGAG-AACTTCAAAGTAGCC-GA 1163
| |||||||| | | ||| | ||||| | || | || || |||||| | | | | ||
Sbjct 1045 TGAAACACCTTGGGA-AAG-ATCAAGA-GTCAGATACA-AGCAACTTCCATG-ATTCAGA 1099
Query 1164 CAGTGACTT-G-GCTTTGGACGTGGAGGAGAAGCTGTCGT-TACTGGAGTGGCTTGCCAA 1220
| | || | ||| | | || |||||||| || | | | || || ||| |||| ||
Sbjct 1100 GACTAACGCCGAGCTA-GAA-GTCCAGGAGAAGATGCC-TCTGCTAGAATGGTTTGCAAA 1156
Query 1221 TGAGTACAGGCGTTTTGGTTGTGCG-TTAGAGTTTGTGACCAACAAGTCACAGGAAGGTT 1279
|||||||| ||||| || || | || ||||||||||| ||||| || || ||||| |
Sbjct 1157 TGAGTACAAACGTTTCGGCTGCACACTT-GAGTTTGTGACTAACAAATCCCAAGAAGGGT 1215
Query 1280 CTCAGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATACTT-CGTTACCAGCTTGACATG 1338
| |||||||||||||| ||||| || || || || || || ||||||||||||||||||
Sbjct 1216 CACAGTTTTGCAGAGGTTTTGGTGGGATTGGTGGGATG-TTACGTTACCAGCTTGACATG 1274
Query 1339 A 1339
|
Sbjct 1275 A 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66315116545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5