BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G47890.1

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494832 jgi|Araly1|494832|fgenesh2_kg.8__648__AT5G47890.1          782    0.0  


> Ahg494832 jgi|Araly1|494832|fgenesh2_kg.8__648__AT5G47890.1
Length=468

 Score =  782 bits (423),  Expect = 0.0
 Identities = 455/470 (97%), Gaps = 4/470 (1%)
 Strand=Plus/Plus

Query  56   GAAGAAGAAGAACGATGGCATGGAGAGGAAGCATATCGAAGTCTATGAAAGAGCTTAGGA  115
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAAAAAGAAGAACGATGGCATGGAGAGGAAGCATATCGAAGTCTATGAAAGAGCTTAGGA  60

Query  116  TTCTTCTTTGTCAATCTTCTCCAGCTAGTGCTCCCACCAGAACGTTTGTTGAGAAGAATT  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  61   TTCTTCTTTGTCAATCTTCTCCAGCTAGTGCTCCCACCAGAACGTTTGTTGAGAATAATT  120

Query  176  ACAAAGATTTGAAGTCTCTAAACCCTAAATTACCAATCTTGATCCGTGAATGTAGTGGAG  235
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  121  ACAAAGATTTGAAGTCTCTAAACCCTAAATTCCCAATCTTGATCCGTGAATGTAGTGGAG  180

Query  236  TCCAGCCTCAGATGTGGGCAAGATATGATATGGGTGTGGAGAGGTGTGTAAACTTGGATG  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TCCAGCCTCAGATGTGGGCAAGATATGATATGGGTGTGGAGAGGTGTGTAAACTTGGATG  240

Query  296  GTCTGACAGAGCCACAGATTCTAAAGGCCCTTGAAAACCTTGTGAAATCCGGAGCTACAA  355
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCTGACCGAGCCACAGATTCTAAAGGCCCTTGAAAACCTTGTGAAATCCGGAGCTACAA  300

Query  356  AGGCCTAAgtttgtttgtttgtttgtttttCTCTATATGATCCCGAATAAGATTAAACCG  415
            | ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  301  AAGCCTAAGGTTGTTTGTTTGTTTGTTTTT-TCTATATGATCCCGAATAAGATTAAACCG  359

Query  416  CAAA-ACAATCATTTGACATTTCCTGTCATTCTACTACTTTGTAACTCCGTGGTGTCATA  474
             ||| ||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct  360  GAAACACC-TCATTTGACATTTCCTGTCATTCTACTACATTGTAACTCCATGGTGTCATA  418

Query  475  TCGCCTTGCATTTGAGTTGGttttttt-GTGTAATCCTTGAACTTGGAAT  523
            ||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  419  TCGCCTTGCGTTTGAGTTGGTTTTTTTTGTGTAATCCTTGAACTTGGAAT  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21328974251


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5