BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47900.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494835 jgi|Araly1|494835|fgenesh2_kg.8__651__AT5G47900.1 2098 0.0
> Ahg494835 jgi|Araly1|494835|fgenesh2_kg.8__651__AT5G47900.1
Length=1410
Score = 2098 bits (1136), Expect = 0.0
Identities = 1339/1433 (93%), Gaps = 29/1433 (2%)
Strand=Plus/Plus
Query 54 ATGTACGAAGCAATCAAAGACAATGATGATAATGATCATCAATGGCGAGAGAAGAAAGAC 113
||||||||| ||||||| | || |||| ||||||| |||||||| ||||||||||||
Sbjct 1 ATGTACGAATTAATCAAA-A-GTTG-TGATGATGATCAACAATGGCGTGAGAAGAAAGAC 57
Query 114 ATTGAGTCTGCTCTTCAGATTTCTCGTTCTTCCTCTCTTCCTCCCGACAAGGAACGATTA 173
||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 58 ATTGAGTCTGCTCTTCAGATTTCTCGTTC-T--TCTCTTCCTCCCGACAAAGAACGATTG 114
Query 174 GTTTCCCTTGATGTCTTTCGCGGTCTTACCGTCGCATTTATGATACTTGTGGATGATGTT 233
||||| |||||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 115 GTTTCTCTTGATGTCTTTCGTGGTCTTACTGTCGCCTTGATGATACTTGTGGATGATGTT 174
Query 234 GGAGGGATTTTACCATCTATTAATCATTCACCTTGGGATGGTGTCACACTAGCGGATTTT 293
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 175 GGAGGGATTTTACCATCTATTAATCATTCACCTTGGGATGGTGTCACACTTGCGGATTTT 234
Query 294 GTCATGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGAACTTG 353
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 235 GTCATGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTATAAGAATTTG 294
Query 354 TCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTGAAACTTCTATTACTT 413
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 295 TCATGTAGGTTTGTTGCAACAAGAAAAGCTTTGATTCGGTCGTTGAAACTTCTCTTACTT 354
Query 414 GGTCTTTTTCTCCAAGGAGGATTTATTCATGGTCTTAATAACTTAACTTATGGAATAGAT 473
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 GGTCTTTTTCTTCAAGGAGGATTTATTCATGGTCTTAACAACTTAACTTATGGAATAGAT 414
Query 474 GTAGAAAAAATTAGACTCATGGGTATATTACAGAGAATAGCGATAGCATACTTAGTTGTT 533
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 415 GTAGAAAAAATTAGATTCATGGGCATATTACAGAGAATAGCGATAGCATACTTAGTTGCT 474
Query 534 GCATTGTGCGAGATTTGGTTAAAGGGAAACCATAATGTTAGCTCAGAGTTATCTATGATC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCATTGTGCGAGATTTGGTTAAAGGGAAACCATAATGTTAGCTCAGAGTTATCTATGATC 534
Query 594 AAGAAATATAGATTTCATTGGGTGGTTGCTTTTGTTATCACAACTATATATTTGTCCTTG 653
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 535 AAGAAATATAGATTTCACTGGGTGGTTGCATTTGTTATTACAACTATATATTTGTCCTTG 594
Query 654 TTATATGGTTTATATGTA-CCTGACTGGGAGTATCAGATTTTAAAAGAAGACCAAGGATC 712
|||| ||||||||||| || ||||||||||||||||||| || |||||||||||||||
Sbjct 595 CTATACGGTTTATATGTGTCC-GACTGGGAGTATCAGATTTCAACAGAAGACCAAGGATC 653
Query 713 AACATTGACAACATTCTTGAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACC 772
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 654 AACATTGACAACATTCTTGAATCTGAAGGTGAAATGCGGGGTACGAGGACACACTGGACC 713
Query 773 AGGCTGTAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTACAG 832
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 714 AGGTTGCAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTATAG 773
Query 833 AAAACCTGTATATGCACGAACCAAGCAATGCAGTATAAATTATCCAAACAATGGGCCATT 892
||||| || |||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 774 GAAACCCGTTTATGCACGAACCAAGCAATGCAGTATAAGTTCTCCAAACAATGGGCCATT 833
Query 893 ACCTCCAGACGCTCCTTCTTGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAGTTC 952
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACCTCCAGATGCTCCTTCTTGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAGTTC 893
Query 953 GTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTT 1012
||||||||| | ||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 894 GTTGATGGCTATCGTTACATGCCTAGTGGGTCTGCACTACGGCCATATTATCATCCACTT 953
Query 1013 CAAGGATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTGATGTT 1072
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 954 CAAGGATCACAAAAAGCGTTTGAATCAATGGATTTTGCGTTCTTTTTGTCTTCTAATGTT 1013
Query 1073 AGGTCTCGCACTGAACCTCTTTGGAATGCATCTAAATAAACCTCTATACACATTGAGTTA 1132
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1014 AGGTCTCGCTCTGAACCTCTTTGGAATGCATCTAAATAAACCTCTATACACACTGAGTTA 1073
Query 1133 CATGTGTGTCACCTCAGGGGCCTCGGGATTTTTGTTATCCGCGATATACCTAATGGTCGA 1192
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1074 CATGTGTGTCACCTCAGGCGCCTCTGGATTTTTGTTATCCGCGATATATCTAATGGTTGA 1133
Query 1193 CGTTTATGGATACAAACGAGCAAGCCTTGTGTTAGAGTGGATGGGAATACATGCCTTACC 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CGTTTATGGATACAAACGAGCAAGCCTTGTGTTAGAGTGGATGGGAATACATGCCTTACC 1193
Query 1253 GATTTACGTTCTCATTGCTTGCAATCTTGTCTTTC-TAATCATTCATGGATTCTACTGGA 1311
||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 1194 GATATACGTTCTCATTGCTTGCAATCTTGT-TTTCCTAATCATTCATGGATTCTATTGGA 1252
Query 1312 AGAACCCCATTAACAATCTCCTTCATTTAATCGGAATCGGAAAGTAAAGAAGAGAAGAGA 1371
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGAAACCCATTAACAATCTCCTTCATTTAATCGGAATCGGAAAGTAAAGAAGAGAAGAGA 1312
Query 1372 AGGGAGGTGAAGAAATAAGTTTCATCAACC-AAAACCTTAA-T-TGTTTTTGTTAGAAAT 1428
|| | ||| | || |||||||| ||||| |||| | | |||||||||||||
Sbjct 1313 AG-----T-AAG---T---TT-CATCAACCCAAAAC-TTAAATATCTTTTTGTTAGAAAG 1358
Query 1429 AAAC-AAATGCCATCTTCATCTTCACATCCCATATGGAATCCAATTTATGCTA 1480
|||| ||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1359 AAACGAAA-GTCATCTTCATCTTCACATCCCACATGGAATCCAATTTATGCTA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5