BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47910.1
Length=3201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949125 jgi|Araly1|949125|scaffold_801012.1 4215 0.0
> Ahg949125 jgi|Araly1|949125|scaffold_801012.1
Length=2803
Score = 4215 bits (2282), Expect = 0.0
Identities = 2642/2816 (94%), Gaps = 23/2816 (1%)
Strand=Plus/Plus
Query 123 TTTTTGGTTTCTCGAATTCGATGAAAATGAGACGAGGCAATTCAAGTAACGACCATGAAC 182
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TTTTTGGTTTCTTGAATTAGATGAAAATGAGACGAGGCAATTCAAGTACCGACCATGAAC 60
Query 183 TTGGGATTCTACGAGGAGCTAACTCGGACACCAACTCGGACACGGAGAGCATCGCTAGCG 242
|||||||||||||||||||||||||||| |||||||| || || || |||||||||||||
Sbjct 61 TTGGGATTCTACGAGGAGCTAACTCGGATACCAACTCTGATACCGAAAGCATCGCTAGCG 120
Query 243 ACCGTGGTGCCTTT-AGCGGTCCGCTTGGCCGGCCTAAACGTGCGTCCAAGAAAAACGCA 301
|||| || | |||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACCGCGGCG-CTTTCAGTGGTCCGCTTGGTCGGCCTAAACGTGCGTCCAAGAAAAACGCA 179
Query 302 AGATTCGCCGACGATCTTCCCAAGAGAAGCAATAGTGTTGCTGGCGGCCGTGGTGATGAC 361
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 180 AGATTCGCCGACGATCTTCCCAAGAGAAGCAACAGTGTTGCTGGCGGCCGCGGTGACGAC 239
Query 362 GATGAGTACGTGGAGATCACGCTAGACATCAGGGACGACTCGGTGGCCGTCCATAGTGTC 421
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 240 GATGAGTACGTGGAGATCACGCTAGACATTAGGGACGACTCGGTGGCCGTCCACAGTGTC 299
Query 422 CAACAAGCAGCTGGAGGTGGAGGCCACCTGGAGGACCCGGAGCTAGCCCTTCTTACGAAG 481
||||||||||||||||| |||| |||||| |||||||| |||||||||||||| ||||||
Sbjct 300 CAACAAGCAGCTGGAGGAGGAGCCCACCTAGAGGACCCCGAGCTAGCCCTTCTCACGAAG 359
Query 482 AAGACTCTCGAGAGCAGCCTCAACAACACCACCTCCTTATCTTTCTTCCGAAGCACCTCC 541
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 AAGACTCTCGAGAGCAGCCTCAACAACACCACCTCCTTATCCTTCTTCCGAAGCACCTCC 419
Query 542 TCACGCATCAAGAACGCCTCCCGCGAGCTCCGCCGCGTGTTCTCTAGACGTCCCTCCCCG 601
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TCACGAATCAAGAACGCCTCCCGCGAGCTCCGCCGTGTGTTCTCTAGACGTCCCTCCCCA 479
Query 602 GCCGTGCGGCGGTTTGACCGCACGAGCTCCGCGGCCATCCACGCACTCAAAGGTCTCAAG 661
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 480 GCCGTGCGGCGGTTTGACCGCACCAGCTCCGCGGCAATCCACGCTCTCAAAGGTCTAAAG 539
Query 662 TTCATTGCCACCAAGACGGCCGCATGGCCGGCCGTCGACCAACGTTTCGATAAACTCTCC 721
||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 540 TTCATCGCCACAAAGACAGCCGCGTGGCCAGCCGTCGACCAACGCTTCGATAAACTCTCC 599
Query 722 GCTGATTCCAACGGCCTCTTACTCTC-TGCCAAGTTTTGGGAATGCTTAGGAATGAATAA 780
|||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||
Sbjct 600 GCTGATTCCAACGGCCTCTTGCTCTCAT-CCAAGTTTTGGGAATGCTTAGGAATGAACAA 658
Query 781 GGAATCTAAAGACTTCGCTGACCAGCTCTTTAGAGCATTAGCTCGCCGGAATAACGTCTC 840
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 GGAATCTAAAGATTTCGCAGACCAGCTCTTTAGAGCATTAGCTCGCCGGAATAACATCTC 718
Query 841 CGGCGATGCAATCACAAAGGAACAGCTTAGGATATTCTGGGAACAGATCTCAGACGAAAG 900
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 719 CGGCGATGCAATCACAAAGGAACAGCTCAGGATATTTTGGGAACAGATCTCAGACGAAAG 778
Query 901 CTTTGATGCCAAACTCCAAGTCTTTTTTGACATGGTGGACAAAGATGAAGATGGGCGAGT 960
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 CTTTGATGCAAAACTACAAGTCTTTTTTGATATGGTGGACAAAGATGAAGATGGGCGAGT 838
Query 961 AACAGAAGAAGAGGTGGCTGAGATTATTAGTCTTAGTGCTTCTGCAAACAAGCTCTCAAA 1020
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||
Sbjct 839 AACAGAAGAAGAGGTGGCTGAGATTATTAGTCTCAGTGCTTCAGCGAACAAGCTCTCTAA 898
Query 1021 TATTCAAAAGCAAGCCAAAGAATATGCGGCACTGATAATGGAAGAGTTGGACCCAGACAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TATTCAAAAGCAAGCCAAAGAATATGCGGCACTGATAATGGAAGAGTTGGACCCAGACAA 958
Query 1081 TGCTGGGTTTATTATGATCGAAAACTTGGAAATGTTGCTATTACAAGCACCAAACCAGTC 1140
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 959 TGCTGGGTTTATTATGATCGAAAACCTGGAGATGTTGCTATTACAAGCACCGAACCAGTC 1018
Query 1141 GGTGCGGATGGGAGACAGCAGGATACTTAGTCAGATGTTAAGTCAGAAGCTTAGACCGGC 1200
||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 1019 GGTGCGGATGGGAGACAGCAGGATACTTAGTCAGATGCTAAGTCAGAAGCTGAAACCGGC 1078
Query 1201 AAAAGAGAGCAACCCTTTAGTGAGATGGTCGGAGAAAATCAAATATTTCATACTTGACAA 1260
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1079 AAAAGAGAGCAACCCTTTAGTGAGGTGGTCGGAGAAAATCAAATATTTCATACTTGACAA 1138
Query 1261 TTGGCAGAGACTATGGATAATGATGTTATGGCTTGGCATCTGTGGTGGCCTCTTTACTTA 1320
|||||||||||||||||| |||||| ||||||||||||| || || ||||||||||||||
Sbjct 1139 TTGGCAGAGACTATGGATCATGATGCTATGGCTTGGCATATGCGGCGGCCTCTTTACTTA 1198
Query 1321 TAAATTCATTCAGTACAAGAA---CAAAGCTGCCTATGGTGTCATGGGTTATTGCGTTTG 1377
|| ||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct 1199 CAAGTTCATTCAGTACAAGAAGAACAAAGCTGCCTATGATGTGATGGGTTATTGTGTTTG 1258
Query 1378 TGTCGCCAAAGGAGGCGCCGAGACTCTCAAATTCAACATGGCTCTCATATTGTTGCCTGT 1437
| ||||||| |||||||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 1259 TATCGCCAAGGGAGGCGCGGAGACTCTTAAATTCAACATGGCTCTCATATTGCTGCCTGT 1318
Query 1438 TTGTCGAAACACCATCACTTGGCTTAGGAACAAGACTAAGCTTGGTACTGTCGTTCCTTT 1497
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1319 TTGTCGTAACACCATCACTTGGCTTAGGAACAAGACTAAGCTAGGTACTGTCGTTCCGTT 1378
Query 1498 TGATGATAGTCTTAACTTCCACAAGGTTATTGCAAGCGGGATAGTCGTCGGTGTTTTACT 1557
||| |||| ||||||||| ||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 1379 TGACGATAATCTTAACTTTCACAAGGTTATTGCAAGCGGGATTGTGGTCGGGGTTTTGCT 1438
Query 1558 CCATGCGGGTGCCCATTTAACGTGTGATTTTCCACGTTTAATTGCCGCGGATGAGGACAC 1617
|||||||||||| |||||||| |||||||| || ||| ||||||||||||||||||| ||
Sbjct 1439 CCATGCGGGTGCGCATTTAACTTGTGATTTCCCGCGTATAATTGCCGCGGATGAGGAAAC 1498
Query 1618 CTATGAGCCGATGGAAAAATACTTTGGGGATCAACC-GACTAGCTACTGGTGGTTTGTGA 1676
||||||||| |||||||||||||||||| | ||||| || | ||||||||||||||||
Sbjct 1499 CTATGAGCCAATGGAAAAATACTTTGGGAAGCAACCAGAGAAT-TACTGGTGGTTTGTGA 1557
Query 1677 AAGGAGTGGAAGGATGGACTGGCATTGTGATGGTTGTGCTAATGGCTATAGCCTTTACAC 1736
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AGGGTGTGGAAGGATGGACTGGCATTGTGATGGTTGTGCTAATGGCTATAGCCTTTACAC 1617
Query 1737 TCGCGACGCCTTGGTTCCGACGTAACAAGCTTAACTTACCTAACTTCCTCAAGAAGCTTA 1796
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1618 TCGCTACGCCTTGGTTCCGTCGTAACAAGCTTAACTTACCTAAATTCCTCAAGAAGCTTA 1677
Query 1797 CCGGTTTCAACGCCTTTTGGTACACCCACCATTTGTTCATCATTGTTTATGCTCTTCTCA 1856
| ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1678 CTGGTTTTAATGCCTTTTGGTACTCCCACCATTTGTTCATCATTGTTTATGCTCTTCTCA 1737
Query 1857 TTGTCCATGGTATCAAGCTCTACCTCACAAAGATTTGGTATCAGAAAACGACATGGATGT 1916
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TTGTCCACGGTATCAAGCTCTACCTCACAAAGATTTGGTATCAGAAAACGACATGGATGT 1797
Query 1917 ATCTTGCTGTACCCATCCTTCTATATGCATCGGAGAGGCTGCTCCGTGCTTTCAGATCAA 1976
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1798 ATCTTGCTGTACCCATCCTTCTATATGCATCTGAGAGGCTGCTACGTGCTTTCAGATCAA 1857
Query 1977 GCATCAAACCGGTTAAGATGATCAAGGTGGCTGTTTACCCCGGGAACGTGTTGTCTCTAC 2036
|||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||
Sbjct 1858 GCATCAAACCGGTTAAGATGCTTAAGGTGGCTGTTTACCCCGGGAATGTATTGTCTCTAC 1917
Query 2037 ACATGACGAAGCCACAAGGATTCAAATACAAAAGTGGACAGTTCATGTTGGTGAACTGCC 2096
||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1918 ACATGACAAAGCCACAAGGATTCAAATACAAAAGTGGACAGTACATGTTCGTGAACTGCC 1977
Query 2097 GAGCCGTATCTCCATTCGAATGGCATCCTTTCTCAATCACATCAGCTCCCGGAGACGATT 2156
||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1978 GAGCCGTATCTCCTTTCGAATGGCATCCTTTCTCCATCACATCCGCTCCGGGAGACGATT 2037
Query 2157 ACCTGAGCGTACATATCCGCACTCTCGGTGACTGGACACGTAAGCTCAGGACCGTTTTCT 2216
||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2038 ACCTGAGTGTACACATCCGCACTCTAGGTGACTGGACACGTAAGCTCAGGACAGTTTTCT 2097
Query 2217 CCGAGGTTTGCAAACCTCCTACCGCCGGTAAAAGCGGTCTTCTCCGAGCAGACGGAGGAG 2276
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2098 CCGAGGTTTGCAAACCTCCTACCGCTGGTAAAAGCGGTCTACTCCGAGCAGACGGAGGAG 2157
Query 2277 ATGGAAACCTCCCGTTCCCGAAGGTCCTTATCGACGGTCCATACGGTGCTCCCGCACAAG 2336
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 ATGGGAACCTCCCGTTCCCAAAGGTCCTTATCGACGGTCCATACGGTGCTCCCGCACAAG 2217
Query 2337 ACTACAAGAAATACGACGTGGTACTCCTCGTAGGTCTCGGCATTGGAGCCACGCCTATGA 2396
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2218 ACTACAAGAAATACGACGTGGTACTCCTCGTAGGTCTCGGCATTGGTGCCACGCCTATGA 2277
Query 2397 TCAGTATCCTTAAGGACATCATCAACAACATGAAAGGTCCTGACCGCGACAGCGACATTG 2456
|||| |||||||||||||||||||||||||||||| || | || ||||||||||| |
Sbjct 2278 TCAGCATCCTTAAGGACATCATCAACAACATGAAA--TC-T--CCT-GACAGCGACATCG 2331
Query 2457 AGAACAATAACAGTAACAACAATAGTAAAGGGTTTAAGACAAGGAAAGCTTATTTCTACT 2516
|||| || |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct 2332 AGAATAACAACAGTAACAACAACAGTAAAGGGTTTAAGACGAGGAAGGCTTACTTCTACT 2391
Query 2517 GGGTGACTAGGGAACAAGGATCATTCGAGTGGTTCAAGGGAATAATGGACGAGATTTCGG 2576
||||||| || ||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 2392 GGGTGACAAGAGAACAAGGATCGTTCGAGTGGTTCAAGGGAATAATGGACGAGGTTTCGG 2451
Query 2577 AGTTAGACGAGGAAGGAATCATCGAGCTTCACAATTATTGCACGAGTGTGTACGAGGAAG 2636
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2452 AGTTAGACGAGGAAGGAATTATCGAGCTTCACAATTATTGCACGAGTGTGTACGAGGAAG 2511
Query 2637 GTGATGCAAGAGTGGCTCTCATTGCCATGCTTCAGTCGTTGCAACACGCTAAGAACGGTG 2696
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2512 GCGATGCTAGAGTGGCTCTCATTGCCATGCTTCAGTCGTTGCAACATGCTAAGAACGGTG 2571
Query 2697 TGGATGTTGTGTCGGGTACACGTGTCAAGTCCCACTTCGCTAAACCTAACTGGAGACAAG 2756
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2572 TCGATGTTGTGTCGGGGACACGTGTCAAGTCCCACTTCGCTAAACCTAACTGGAGACAAG 2631
Query 2757 TCTACAAGAAGATCGCTGTTCAACATCCCGGCAAAAGAATAGGAGTCTTCTACTGTGGAA 2816
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2632 TCTACAAGAAGATCGCAGTTCAACATCCCGGCAAAAGAATCGGAGTCTTCTACTGTGG-- 2689
Query 2817 TGC-C-AGGAATGATAAAGGAATTAAAAAATCTAGCTTTGGATTTTTCTCGAAAGACAAC 2874
||| | |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2690 TGCACCAGGATTGACAAAGGAATTAAAAAATCTAGCTTTGGATTTCTCTCGAAAGACAAC 2749
Query 2875 TACCAAGTTTGACTTCCACAAAGAGAACTTCTAGATTAATTATATACGTTGTAGAA 2930
|||||||||||||||||||||||||||||||||||||| | ||| | || ||||||
Sbjct 2750 TACCAAGTTTGACTTCCACAAAGAGAACTTCTAGATTA-T-ATA-A-GTCGTAGAA 2801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120936527875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5