BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47920.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494838 jgi|Araly1|494838|fgenesh2_kg.8__654__AT5G47920.1 1142 0.0
> Ahg494838 jgi|Araly1|494838|fgenesh2_kg.8__654__AT5G47920.1
Length=867
Score = 1142 bits (618), Expect = 0.0
Identities = 748/808 (93%), Gaps = 20/808 (2%)
Strand=Plus/Plus
Query 60 GAAAAAATATGAAGAAAGCTACGGCATTGATGAAACATATCGTTGCATTGTTGAGTTCCA 119
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 31 GAAAAAATATGAAGAAAGCTACGGCATTGATGAAACATATCGTTGCGTTGTTGAGTTCTA 90
Query 120 TGGCGAAGGCAAAATCTATAGCCATAAAGAACAAAACGAGTGCTTTCAAGACACGAGTAC 179
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 91 TGGCGAAGGCTAAATCTATAGCCATAAAGAACAAAACAAGTGCTTTCAAGACACGAGTAC 150
Query 180 TCATGTTGTCTCTAGTGAAACACAAGAAACTCGGGTTCCGTTCCATTTCCAACAAGATTC 239
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 151 TCATGTTGTCTCTAGTGAAACACAAGAAACTCGGGTTTCGTTCGATTTCCAACAAGATTC 210
Query 240 ACCACCTCTTGGGCCATGCGGATC-A-A-GACGACGATAACGACCAGGACCAAGACAAGA 296
||||||||||||||||||| |||| | | |||||||| |||||||| |||||||||||||
Sbjct 211 ACCACCTCTTGGGCCATGCAGATCAAGACGACGACGACAACGACCATGACCAAGACAAGA 270
Query 297 ACAAGGCTATAGTCCTCTACAACAGCAAGGCATCCACAATGGCTCATCATGAGGAATATG 356
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 271 ACAAGGCTATAGTTCTCTACAACAGCAAGGCATACACAATGGCTCATCATGAGGAATACG 330
Query 357 ACGTTCACGAGGAGGAAAGCGACAAGTATCCTGATCTGAGGCACACGTTGTTCGAAGGAG 416
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 331 ATGTTCACGAGGAGGACAGCGACAAGTATCCAGATCTGAGGCACACGTTGTTCGAAGGAG 390
Query 417 AGGAGGACTTCGGGGACTTGGAGGAGGAAGGTCAAGGTAGTTCTGTGATAGATATGGTGA 476
||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 391 AGGAGGAGTTTGGAGACTTGGAGGAGGAAGGTCAAGGTAGTTCTGTGATAGAAATGGTGA 450
Query 477 GGACCTCGAAGGAAGAAGAAGGAGAGAATTTCAAGCTAGAAGATGAGATCGACCATGTCG 536
||| |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 451 GGAACTCG-A--AAGAAGAAGGAGAGAATTTTAAGCTAGAAGATGAGATCGACCATGTCG 507
Query 537 CGGATCTCTTTATTTCTAGGTTTCATAAGCAGATGAAGCTTCAGAAACTCTTGTCCTTCA 596
| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 CAGATATCTTTATTTCAAGGTTTCATAAGCAGATGAAGCTTCAGAAACTCTTGTCCTTCA 567
Query 597 AGAGGTATCAAGAAATGCTAGCCCGAGGCACCTAA-ACCCATATC----Catatatatat 651
||||||||||||| ||||||||||||||||||||| ||| ||||| |||||| ||||
Sbjct 568 AGAGGTATCAAGAGATGCTAGCCCGAGGCACCTAATACCTATATCTTTACATATACATAT 627
Query 652 ataAACATGTTGGCAATAGATATGAATAATAGATTCATATTATGATCTTTGCTAACGTAC 711
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 ATAAACATGTTGGCGATAGATATGAATAATAGATTCATATTATGATCTTTGCTAACGT-- 685
Query 712 GTTCTTATTTTGTGTTGTCTATGATAAATCCTTCGAGTTCTCTTATTTTCTAGGATCGAA 771
| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 686 -T-CTTATTTTGTGTTGTCTATAATAAATCCTTCGAGCCCCCTTATTTTCTAGGATCGAA 743
Query 772 ATATTACGGTCTCTTAGATCTGTTTTCATTTAATATGTTGAAGTTGAAGGAAGGATCTG- 830
|||||| | ||||||||| ||||||||||| | ||||||| ||||||||||||||||
Sbjct 744 ATATTATGACCTCTTAGATATGTTTTCATTTGACATGTTGA-GTTGAAGGAAGGATCTAT 802
Query 831 CT-TT--GCGGAATATGTTTTCTTCCTC 855
|| || | |||||||||||||||||||
Sbjct 803 CTGTTTTGTGGAATATGTTTTCTTCCTC 830
Score = 60.2 bits (32), Expect = 3e-08
Identities = 46/52 (88%), Gaps = 3/52 (6%)
Strand=Plus/Plus
Query 1 ATGCTAATTAAGCAACATCCAAAACATAAGTAAAACACTATTATAGAA-GCT 51
|||||||||||||||||||||||||||||| |||| | ||| | |||| |||
Sbjct 1 ATGCTAATTAAGCAACATCCAAAACATAAGGAAAAAA-TATGA-AGAAAGCT 50
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5