BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47930.1
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949127 jgi|Araly1|949127|scaffold_801014.1 440 5e-123
> Ahg949127 jgi|Araly1|949127|scaffold_801014.1
Length=295
Score = 440 bits (238), Expect = 5e-123
Identities = 275/293 (94%), Gaps = 2/293 (1%)
Strand=Plus/Plus
Query 55 CCTTTCCACAAGCAATCATGGTGCTCCAAAACGACATCGATCTCCTTC-ATCCGCCACCT 113
||||||| ||||||||||||||||||||||| ||||||||||||| || |||| || ||
Sbjct 4 CCTTTCCGCAAGCAATCATGGTGCTCCAAAATGACATCGATCTCC-TCAATCCTCCTGCT 62
Query 114 GAGCTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTC 173
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 63 GAGCTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCTTTCTTC 122
Query 174 ATGGATGTTAAGTGTCAGGGATGCTTCAACATAACCACTGTGTTCAGCCATTCTCAAACT 233
||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 123 ATGGATGTTAAGTGTCAGGGATGTTTTAACATAACCACTGTGTTCAGCCATTCGCAAACA 182
Query 234 GTTGTGGTATGTGGAAACTGTCAGACAGTTCTGTGCCAGCCCACCGGTGGTAAAGCGAGG 293
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 183 GTTGTAGTGTGTGGAAACTGTCAGACAGTTCTGTGCCAGCCCACCGGTGGTAAAGCCAGG 242
Query 294 CTACAAGAGGGATGCTCTTTCAGGAAGAAGTGAGATTGAGATCTCACGAATCA 346
|| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 243 CTCCAAGAAGGATGCTCTTTCAGGAAGAAGTGAGATTGAGTTCTCACGAATCA 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21443441018
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5