BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47940.1 Length=2415 Score E Sequences producing significant alignments: (Bits) Value Ahg916207 jgi|Araly1|916207|Al_scaffold_0008_958 1094 0.0 > Ahg916207 jgi|Araly1|916207|Al_scaffold_0008_958 Length=2268 Score = 1094 bits (592), Expect = 0.0 Identities = 800/899 (89%), Gaps = 19/899 (2%) Strand=Plus/Plus Query 1360 ATCAGTAATGAGGAGGTTGGTCATTCATTTGAAGAGAAACCAAAACATTCGTTGTCTATA 1419 ||||||||||||||||||||| || | |||||||||||||||||||||||| |||||||| Sbjct 1381 ATCAGTAATGAGGAGGTTGGTTATACTTTTGAAGAGAAACCAAAACATTCGCTGTCTATA 1440 Query 1420 AATGATGCTTTAGCATCTGCACTTGCTGGGTTATTGTCTTCACATTCGATCACCGA-TGG 1478 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||| Sbjct 1441 AATGATGCTTTAGCATCTGCACTTGCTGGATTATTGTCTTCGCATTCGATGACC-AGTGG 1499 Query 1479 AAAATACAGTCAAGCCCTCGTAATTACAGCCCCAGAATTTTCAAGTGAAGATGATGTGGA 1538 ||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| || Sbjct 1500 AAAATACAGCCAAGCCCTCGTAGTTACAGCCCCAGAATTTTCAAATGAAGATGATGTAGA 1559 Query 1539 GATAGAAGAGAAACCT-GGGACGAGTGCCCATCCAGACGATAGCCAAGTTGCAGCAGAGG 1597 ||||||||||||| || || |||| ||| ||||||||| ||||||||||||||||||| Sbjct 1560 GATAGAAGAGAAATCTCAGG-TGAGTACCCTTCCAGACGAAAGCCAAGTTGCAGCAGAGG 1618 Query 1598 AGTCTGAAAACAGGTACTCTTCTTCCTTGGAGAGCTCTACTTCGTCACAGAAA-GAGC-- 1654 |||||||||||| |||||| ||| | || || | | | ||| |||| |||| || | Sbjct 1619 AGTCTGAAAACACATACTCTGCTT-C--GGGGAACCCAAGTTCTTCACTGAAAGGA-CTT 1674 Query 1655 CCGGAAT-TACTCCAGACGATTCTCATGG-AACGATGTATGGAGTTTTTAAAAAACTGGA 1712 | || || | |||| ||||||| || || ||| |||||||||| ||||||| |||| Sbjct 1675 GCTTCATGTATTGAAGACAATTCTCA-GGAAATGATTTATGGAGTTTCTAAAAAATTGGA 1733 Query 1713 TGATAGTTTTGGAGGAGATGAGGAAGCTGAGACTGTGGTTAGCGTCAGCGACAATGCTTT 1772 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1734 TGATAGTTTTGGAGGAGATGAGGAAGCTGAGACAGTGGTTAGCGTCAGAGACAATGCTTT 1793 Query 1773 AGATGAAGAGACGGTAACATCAAGCACAAAAGCTGATTGTTACACAGAAAGGGAAAACCT 1832 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1794 AGATGTAGAGACGGTAACATCAAGCACAAAAGCTGATTGTTACACAGAAAGGGAGAACCT 1853 Query 1833 CAGTTATAAACCCACGGAACCTGATTCCCTGATTCACGAGCTCGAGAGTTCAAATGTAAC 1892 |||| |||| |||| ||| || |||||||||||||||||| |||||| | ||||| |||| Sbjct 1854 CAGTGATAAGCCCATGGATCCCGATTCCCTGATTCACGAGATCGAGAATCCAAATTTAAC 1913 Query 1893 TAC-CGCAAAATGCAAAGGAGAGCCTTCAATGGATGATGTCTTGAAGAGTGTTCTAGGTT 1951 || | |||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 1914 TAGTC-CAAAATGCAAAGGAGAGCCTGAAATGGATGATGTCTTGAAGAGTGTTCTCGGTT 1972 Query 1952 TTCAACCGACTACTTCTTCGGTCGATTTCCTAACACCAGTCCTGGATGTGAAATTTAATT 2011 ||||||||||||| ||||| || || |||||||| ||||| ||||||||||||||||||| Sbjct 1973 TTCAACCGACTACGTCTTCAGTTGACTTCCTAACTCCAGTTCTGGATGTGAAATTTAATT 2032 Query 2012 TAGAGAATAAAGACTCAGACAGCAAGTATTTCTTTGAGGTACTCTTCACAGAAGAATCGA 2071 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | Sbjct 2033 CAGAGAATAAAGACTCAGACAGCAAGTGTTTCTTTGAGGCACTCTTCACAGAAGAATCTA 2092 Query 2072 AAACTTATGTAGATTGCAAGAACGATGTTTTTGATGATAACTTAGTCTCAGTGGAAGATG 2131 ||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||| Sbjct 2093 AAACTGATGTAGATTGCAAGAACGAAGCTTTTGAAGATAACTTAGTCTCAGTGGAAGATG 2152 Query 2132 AAGAAGAACTCAAAGGACCACCAACAGATACCCTTTCGTCTGTGGAGATGAATCACTATG 2191 ||||| || ||||| |||||||||||||||||||| ||| |||||||| ||||||||| Sbjct 2153 AAGAA---CTAAAAGGCCCACCAACAGATACCCTTTCATCTATGGAGATGGATCACTATG 2209 Query 2192 CGACGAACGAGATGCCTATACACTGGAATGGTGAAATATCAGAAGCGAGTCTTATATAA 2250 ||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||||| Sbjct 2210 CGATTAACGAGATGCCTCTACACTGGAATGGTGACATATCAGAAGCAAGTCTTATATAA 2268 Score = 566 bits (306), Expect = 3e-160 Identities = 449/515 (87%), Gaps = 22/515 (4%) Strand=Plus/Plus Query 1 ATGGGTGCAAGCAATCACGATAACGATTTCAATTCTACGACAAACTGGAAACTCGTCGAC 60 |||| ||| | ||| ||||| |||||||||||||||| |||||||||||||||| || | Sbjct 1 ATGGATGCGACCAACCACGACGACGATTTCAATTCTACCACAAACTGGAAACTCGCCGGC 60 Query 61 GGTACACTCATAGACGCCATCTCATTTGAATCCTCCTTCACTGCAAACCCCGAATCTGAC 120 ||| | |||| |||| ||||||| ||||| || |||||||| |||||| ||||||||| Sbjct 61 GGTGCCCTCACAGACTCCATCTCCTTTGAGTCTTCCTTCACCGCAAACGATGAATCTGAC 120 Query 121 GACGGAATCATCTCTGCCGCCGTCGATCATGTAACCAAATCCCCGTTACTTCTTCTCCCT 180 || ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 121 GATGGAATCATCTCCGCCGCCGTCAATCATGTAACCAAATCCCCCTTACTTCTTCTCCCT 180 Query 181 CCGGTTCCCAACGGCGAGCCTTGTGAAATTACAATTACATTTGCACAAGAACATGAATT- 239 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 CCAGTTCCCAACGGCGAGCCATGTGAAATTACAATTACATTTGCACAAGAACATGAATTG 240 Query 240 AAGGCAAATCTACATCCGAAGTAGTGCACGAGTATACGAAGTGTATTACACGAAAAAGCG 299 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AA-GCAAATCTATATCCGAAGTAGTGCACGAGTATACGAAGTGTATTACACGAAAAAGCG 299 Query 300 ACGACATGATAAGGAATATCTGTGTACTGTTCGATGTGGTGTTGCAATTAGAGATGAAGA 359 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 300 GCGACATGATAAGGAATATTTGTGTACTGTTCGATGTGGTGTTGCAATTAGAGATGAAGA 359 Query 360 AGTGCTTCAGATCCCTCTTACAGAGTCAGCTGATTCTAAACCAGTAAAGGATTTGATCGA 419 ||||||||||| | | ||| | | || | || ||||||||| ||| || Sbjct 360 AGTGCTTCAGAG---T-T--CAG--T--G--GA----A--CCGGTAAAGGATCCGATTGA 401 Query 420 GAGGAAGGTTGCA-GATAATGGTAATGGACGGACGAGCGAAGATGATTGGGTTGAAGTGA 478 || || ||| | | | |||||| |||||||||| || |||||||||||||||||||||| Sbjct 402 GAAGAGGGT-GAAAGTTAATGGGAATGGACGGATGAATGAAGATGATTGGGTTGAAGTGA 460 Query 479 AAGCTAGTGATGATTCTCTGTTGAATAATGAAAAA 513 ||||| |||||||||||||| |||||||||||||| Sbjct 461 AAGCTGGTGATGATTCTCTGCTGAATAATGAAAAA 495 Score = 523 bits (283), Expect = 2e-147 Identities = 354/387 (91%), Gaps = 9/387 (2%) Strand=Plus/Plus Query 827 CTGATCAGATAGGAGTGAGCTCACCAGTTTTAGTTGATACTGTTGCAAAGCAGGTTGATG 886 ||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||||| Sbjct 878 CTGATCAGATAGGAGAGAGCTCACCAGTTTTAGTTGATACTCTTCCAAAGCGGGTTGATG 937 Query 887 CAGCAACACGAGTATCTGGAGCAGAAAGCAAGCCTGCTATACCTTGCAATAATGTGGAGA 946 ||| ||||||||||||||| ||||||| |||||||||| | |||||||||||||||||| Sbjct 938 CAGTAACACGAGTATCTGGGGCAGAAATCAAGCCTGCTCTGTCTTGCAATAATGTGGAGA 997 Query 947 CTATTCTGAATCAGCTTGTTAACAAGGTAAGTATGATAGAAACTATCTTGATAAGATTTG 1006 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 998 CTATTCTGTATCAGCTTGTTAACAAGGTAAGCATGATAGAAACTATCTTGATAAGATTTG 1057 Query 1007 AAGATCAGATGTTGAAACCTATTAATAGTATTGATGCAAGGCTCCAGTTAGTTGAGAAGA 1066 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1058 AAGATCAGATGTTGAAGCCTATTAATAGTATTGATGCAAGGCTCCAGTTAGTAGAGAAGA 1117 Query 1067 AACTCGAACAGCTAGGAAAGAA-A--TCATTTGAATCTGATTTGGGTTTTCGAAC-GAAA 1122 |||||||||||||||||||||| | |||||||||||||| || | ||||| || |||| Sbjct 1118 AACTCGAACAGCTAGGAAAGAAGAAATCATTTGAATCTGAATTAGATTTTC-AAGTGAAA 1176 Query 1123 ATACCCA-ATCAAGATTCTCTGCGCAGTGATACTGATAAAACTCCTGATACCGATGAGAG 1181 || || | ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1177 ATGCC-ATATCCAGATTCTCTGGGCAGTGATACAGATAAAACTCCTGATACCGATGAGT- 1234 Query 1182 TG-ATGGATTGACTAAAAACACGGATG 1207 || |||||||||||| ||||||||||| Sbjct 1235 TGGATGGATTGACTATAAACACGGATG 1261 Score = 464 bits (251), Expect = 1e-129 Identities = 294/315 (93%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 511 AAACAGGATTTTTATGAAGCTACTGCGGAGATCAATGATGCGGAACCTTGCACTTCGATT 570 ||||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 523 AAACAGGTTTTTTATGAAGCTACTGCAGAGATCAATGACGCAGAACCTTGCACTTCGATT 582 Query 571 ACAGTTCGTCTCCTCTCCCTTCAGGATAAAAGATGTGCACTTGTAGATGAAGTTTATGTA 630 ||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 583 ACAGTCCGTCTTCTCTCTCTTCAGGATAAAAGATGTGCACTTGTTGATGAAGTTTATGTG 642 Query 631 TTTGCTGATCCTGTTGATCCAAGTGAGTCAGAGAAGGAAGAAGCAACTGGAACAGGAAAT 690 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 643 TTTGCTGATCCTGTTGATCCAAGTGAGTCAGAGAAGGAAGAAGCAAGTGGAACAGGAAAT 702 Query 691 TCATCTAGTAGTTCGTTGATGGCTATGTTTATGCCTGCTCTTTTGCAGCTATCTCGAGGA 750 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 703 TCATCTAGTAGTTCGTTGATGGCAATGTTTATGCCCGCTCTTTTGCAGCTATCTCGAGGA 762 Query 751 AAAGATGTCAGAAAAGAACGGGATATACAAGTTTCCGACAAGTCCAACAGTACAGA-TCC 809 |||||||| |||||||||||||||| |||||||||||| |||||||||| || || ||| Sbjct 763 AAAGATGTTAGAAAAGAACGGGATAGACAAGTTTCCGATGAGTCCAACAGCAC-GAATCC 821 Query 810 AGTAGCTATAGGAAA 824 ||||| | ||||||| Sbjct 822 AGTAGATTTAGGAAA 836 Score = 145 bits (78), Expect = 2e-33 Identities = 84/87 (97%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1210 GTTCCTGACTCCTCTAGTATAGACAACAGTGAAGATTGTGCTGTTGTACTACCGAAGAAC 1269 |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1294 GTTCTTGACTCCTCTAGTATAGACAACAGTGAAGATTGTTCTGTTGTACTACCGAAGAAC 1353 Query 1270 AGGCTTGATAATATTCTTTCAAAGTCT 1296 |||||||||||||||||| |||||||| Sbjct 1354 AGGCTTGATAATATTCTTCCAAAGTCT 1380 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90997595305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5