BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47940.1
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916207 jgi|Araly1|916207|Al_scaffold_0008_958 1094 0.0
> Ahg916207 jgi|Araly1|916207|Al_scaffold_0008_958
Length=2268
Score = 1094 bits (592), Expect = 0.0
Identities = 800/899 (89%), Gaps = 19/899 (2%)
Strand=Plus/Plus
Query 1360 ATCAGTAATGAGGAGGTTGGTCATTCATTTGAAGAGAAACCAAAACATTCGTTGTCTATA 1419
||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct 1381 ATCAGTAATGAGGAGGTTGGTTATACTTTTGAAGAGAAACCAAAACATTCGCTGTCTATA 1440
Query 1420 AATGATGCTTTAGCATCTGCACTTGCTGGGTTATTGTCTTCACATTCGATCACCGA-TGG 1478
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||
Sbjct 1441 AATGATGCTTTAGCATCTGCACTTGCTGGATTATTGTCTTCGCATTCGATGACC-AGTGG 1499
Query 1479 AAAATACAGTCAAGCCCTCGTAATTACAGCCCCAGAATTTTCAAGTGAAGATGATGTGGA 1538
||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| ||
Sbjct 1500 AAAATACAGCCAAGCCCTCGTAGTTACAGCCCCAGAATTTTCAAATGAAGATGATGTAGA 1559
Query 1539 GATAGAAGAGAAACCT-GGGACGAGTGCCCATCCAGACGATAGCCAAGTTGCAGCAGAGG 1597
||||||||||||| || || |||| ||| ||||||||| |||||||||||||||||||
Sbjct 1560 GATAGAAGAGAAATCTCAGG-TGAGTACCCTTCCAGACGAAAGCCAAGTTGCAGCAGAGG 1618
Query 1598 AGTCTGAAAACAGGTACTCTTCTTCCTTGGAGAGCTCTACTTCGTCACAGAAA-GAGC-- 1654
|||||||||||| |||||| ||| | || || | | | ||| |||| |||| || |
Sbjct 1619 AGTCTGAAAACACATACTCTGCTT-C--GGGGAACCCAAGTTCTTCACTGAAAGGA-CTT 1674
Query 1655 CCGGAAT-TACTCCAGACGATTCTCATGG-AACGATGTATGGAGTTTTTAAAAAACTGGA 1712
| || || | |||| ||||||| || || ||| |||||||||| ||||||| ||||
Sbjct 1675 GCTTCATGTATTGAAGACAATTCTCA-GGAAATGATTTATGGAGTTTCTAAAAAATTGGA 1733
Query 1713 TGATAGTTTTGGAGGAGATGAGGAAGCTGAGACTGTGGTTAGCGTCAGCGACAATGCTTT 1772
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1734 TGATAGTTTTGGAGGAGATGAGGAAGCTGAGACAGTGGTTAGCGTCAGAGACAATGCTTT 1793
Query 1773 AGATGAAGAGACGGTAACATCAAGCACAAAAGCTGATTGTTACACAGAAAGGGAAAACCT 1832
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1794 AGATGTAGAGACGGTAACATCAAGCACAAAAGCTGATTGTTACACAGAAAGGGAGAACCT 1853
Query 1833 CAGTTATAAACCCACGGAACCTGATTCCCTGATTCACGAGCTCGAGAGTTCAAATGTAAC 1892
|||| |||| |||| ||| || |||||||||||||||||| |||||| | ||||| ||||
Sbjct 1854 CAGTGATAAGCCCATGGATCCCGATTCCCTGATTCACGAGATCGAGAATCCAAATTTAAC 1913
Query 1893 TAC-CGCAAAATGCAAAGGAGAGCCTTCAATGGATGATGTCTTGAAGAGTGTTCTAGGTT 1951
|| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1914 TAGTC-CAAAATGCAAAGGAGAGCCTGAAATGGATGATGTCTTGAAGAGTGTTCTCGGTT 1972
Query 1952 TTCAACCGACTACTTCTTCGGTCGATTTCCTAACACCAGTCCTGGATGTGAAATTTAATT 2011
||||||||||||| ||||| || || |||||||| ||||| |||||||||||||||||||
Sbjct 1973 TTCAACCGACTACGTCTTCAGTTGACTTCCTAACTCCAGTTCTGGATGTGAAATTTAATT 2032
Query 2012 TAGAGAATAAAGACTCAGACAGCAAGTATTTCTTTGAGGTACTCTTCACAGAAGAATCGA 2071
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct 2033 CAGAGAATAAAGACTCAGACAGCAAGTGTTTCTTTGAGGCACTCTTCACAGAAGAATCTA 2092
Query 2072 AAACTTATGTAGATTGCAAGAACGATGTTTTTGATGATAACTTAGTCTCAGTGGAAGATG 2131
||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 2093 AAACTGATGTAGATTGCAAGAACGAAGCTTTTGAAGATAACTTAGTCTCAGTGGAAGATG 2152
Query 2132 AAGAAGAACTCAAAGGACCACCAACAGATACCCTTTCGTCTGTGGAGATGAATCACTATG 2191
||||| || ||||| |||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 2153 AAGAA---CTAAAAGGCCCACCAACAGATACCCTTTCATCTATGGAGATGGATCACTATG 2209
Query 2192 CGACGAACGAGATGCCTATACACTGGAATGGTGAAATATCAGAAGCGAGTCTTATATAA 2250
||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2210 CGATTAACGAGATGCCTCTACACTGGAATGGTGACATATCAGAAGCAAGTCTTATATAA 2268
Score = 566 bits (306), Expect = 3e-160
Identities = 449/515 (87%), Gaps = 22/515 (4%)
Strand=Plus/Plus
Query 1 ATGGGTGCAAGCAATCACGATAACGATTTCAATTCTACGACAAACTGGAAACTCGTCGAC 60
|||| ||| | ||| ||||| |||||||||||||||| |||||||||||||||| || |
Sbjct 1 ATGGATGCGACCAACCACGACGACGATTTCAATTCTACCACAAACTGGAAACTCGCCGGC 60
Query 61 GGTACACTCATAGACGCCATCTCATTTGAATCCTCCTTCACTGCAAACCCCGAATCTGAC 120
||| | |||| |||| ||||||| ||||| || |||||||| |||||| |||||||||
Sbjct 61 GGTGCCCTCACAGACTCCATCTCCTTTGAGTCTTCCTTCACCGCAAACGATGAATCTGAC 120
Query 121 GACGGAATCATCTCTGCCGCCGTCGATCATGTAACCAAATCCCCGTTACTTCTTCTCCCT 180
|| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 121 GATGGAATCATCTCCGCCGCCGTCAATCATGTAACCAAATCCCCCTTACTTCTTCTCCCT 180
Query 181 CCGGTTCCCAACGGCGAGCCTTGTGAAATTACAATTACATTTGCACAAGAACATGAATT- 239
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAGTTCCCAACGGCGAGCCATGTGAAATTACAATTACATTTGCACAAGAACATGAATTG 240
Query 240 AAGGCAAATCTACATCCGAAGTAGTGCACGAGTATACGAAGTGTATTACACGAAAAAGCG 299
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AA-GCAAATCTATATCCGAAGTAGTGCACGAGTATACGAAGTGTATTACACGAAAAAGCG 299
Query 300 ACGACATGATAAGGAATATCTGTGTACTGTTCGATGTGGTGTTGCAATTAGAGATGAAGA 359
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCGACATGATAAGGAATATTTGTGTACTGTTCGATGTGGTGTTGCAATTAGAGATGAAGA 359
Query 360 AGTGCTTCAGATCCCTCTTACAGAGTCAGCTGATTCTAAACCAGTAAAGGATTTGATCGA 419
||||||||||| | | ||| | | || | || ||||||||| ||| ||
Sbjct 360 AGTGCTTCAGAG---T-T--CAG--T--G--GA----A--CCGGTAAAGGATCCGATTGA 401
Query 420 GAGGAAGGTTGCA-GATAATGGTAATGGACGGACGAGCGAAGATGATTGGGTTGAAGTGA 478
|| || ||| | | | |||||| |||||||||| || ||||||||||||||||||||||
Sbjct 402 GAAGAGGGT-GAAAGTTAATGGGAATGGACGGATGAATGAAGATGATTGGGTTGAAGTGA 460
Query 479 AAGCTAGTGATGATTCTCTGTTGAATAATGAAAAA 513
||||| |||||||||||||| ||||||||||||||
Sbjct 461 AAGCTGGTGATGATTCTCTGCTGAATAATGAAAAA 495
Score = 523 bits (283), Expect = 2e-147
Identities = 354/387 (91%), Gaps = 9/387 (2%)
Strand=Plus/Plus
Query 827 CTGATCAGATAGGAGTGAGCTCACCAGTTTTAGTTGATACTGTTGCAAAGCAGGTTGATG 886
||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 878 CTGATCAGATAGGAGAGAGCTCACCAGTTTTAGTTGATACTCTTCCAAAGCGGGTTGATG 937
Query 887 CAGCAACACGAGTATCTGGAGCAGAAAGCAAGCCTGCTATACCTTGCAATAATGTGGAGA 946
||| ||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||
Sbjct 938 CAGTAACACGAGTATCTGGGGCAGAAATCAAGCCTGCTCTGTCTTGCAATAATGTGGAGA 997
Query 947 CTATTCTGAATCAGCTTGTTAACAAGGTAAGTATGATAGAAACTATCTTGATAAGATTTG 1006
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 998 CTATTCTGTATCAGCTTGTTAACAAGGTAAGCATGATAGAAACTATCTTGATAAGATTTG 1057
Query 1007 AAGATCAGATGTTGAAACCTATTAATAGTATTGATGCAAGGCTCCAGTTAGTTGAGAAGA 1066
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1058 AAGATCAGATGTTGAAGCCTATTAATAGTATTGATGCAAGGCTCCAGTTAGTAGAGAAGA 1117
Query 1067 AACTCGAACAGCTAGGAAAGAA-A--TCATTTGAATCTGATTTGGGTTTTCGAAC-GAAA 1122
|||||||||||||||||||||| | |||||||||||||| || | ||||| || ||||
Sbjct 1118 AACTCGAACAGCTAGGAAAGAAGAAATCATTTGAATCTGAATTAGATTTTC-AAGTGAAA 1176
Query 1123 ATACCCA-ATCAAGATTCTCTGCGCAGTGATACTGATAAAACTCCTGATACCGATGAGAG 1181
|| || | ||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1177 ATGCC-ATATCCAGATTCTCTGGGCAGTGATACAGATAAAACTCCTGATACCGATGAGT- 1234
Query 1182 TG-ATGGATTGACTAAAAACACGGATG 1207
|| |||||||||||| |||||||||||
Sbjct 1235 TGGATGGATTGACTATAAACACGGATG 1261
Score = 464 bits (251), Expect = 1e-129
Identities = 294/315 (93%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 511 AAACAGGATTTTTATGAAGCTACTGCGGAGATCAATGATGCGGAACCTTGCACTTCGATT 570
||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 523 AAACAGGTTTTTTATGAAGCTACTGCAGAGATCAATGACGCAGAACCTTGCACTTCGATT 582
Query 571 ACAGTTCGTCTCCTCTCCCTTCAGGATAAAAGATGTGCACTTGTAGATGAAGTTTATGTA 630
||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 583 ACAGTCCGTCTTCTCTCTCTTCAGGATAAAAGATGTGCACTTGTTGATGAAGTTTATGTG 642
Query 631 TTTGCTGATCCTGTTGATCCAAGTGAGTCAGAGAAGGAAGAAGCAACTGGAACAGGAAAT 690
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 643 TTTGCTGATCCTGTTGATCCAAGTGAGTCAGAGAAGGAAGAAGCAAGTGGAACAGGAAAT 702
Query 691 TCATCTAGTAGTTCGTTGATGGCTATGTTTATGCCTGCTCTTTTGCAGCTATCTCGAGGA 750
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 703 TCATCTAGTAGTTCGTTGATGGCAATGTTTATGCCCGCTCTTTTGCAGCTATCTCGAGGA 762
Query 751 AAAGATGTCAGAAAAGAACGGGATATACAAGTTTCCGACAAGTCCAACAGTACAGA-TCC 809
|||||||| |||||||||||||||| |||||||||||| |||||||||| || || |||
Sbjct 763 AAAGATGTTAGAAAAGAACGGGATAGACAAGTTTCCGATGAGTCCAACAGCAC-GAATCC 821
Query 810 AGTAGCTATAGGAAA 824
||||| | |||||||
Sbjct 822 AGTAGATTTAGGAAA 836
Score = 145 bits (78), Expect = 2e-33
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1210 GTTCCTGACTCCTCTAGTATAGACAACAGTGAAGATTGTGCTGTTGTACTACCGAAGAAC 1269
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1294 GTTCTTGACTCCTCTAGTATAGACAACAGTGAAGATTGTTCTGTTGTACTACCGAAGAAC 1353
Query 1270 AGGCTTGATAATATTCTTTCAAAGTCT 1296
|||||||||||||||||| ||||||||
Sbjct 1354 AGGCTTGATAATATTCTTCCAAAGTCT 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90997595305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5