BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47950.1 Length=1516 Score E Sequences producing significant alignments: (Bits) Value Ahg494841 jgi|Araly1|494841|fgenesh2_kg.8__657__AT5G47950.1 1923 0.0 > Ahg494841 jgi|Araly1|494841|fgenesh2_kg.8__657__AT5G47950.1 Length=1346 Score = 1923 bits (1041), Expect = 0.0 Identities = 1231/1323 (93%), Gaps = 12/1323 (1%) Strand=Plus/Plus Query 17 AAACAAAGAAAGGGAAGGAGGAAGATTAATCGATGGACACCATGAAGGTAGAAACT-ATT 75 |||||||| ||||||| || |||||| |||| ||||||||||||||||| |||| | ||| Sbjct 1 AAACAAAGGAAGGGAAAGAAGAAGATCAATCCATGGACACCATGAAGGTTGAAA-TCATT 59 Query 76 GGTAAAGAGATCATTAAGCCATCTGCAACAACTCCAACTGATCTCTCAACTCTTCAACTC 135 |||||||||||||| ||||||||||||| |||||||||||||||| || |||||||| || Sbjct 60 GGTAAAGAGATCATAAAGCCATCTGCAATAACTCCAACTGATCTCCCACCTCTTCAATTC 119 Query 136 TCTATTATGGATATACTAATGCCTCCGGTTTACGCCGTTGCCTTTCTTTTCTACACCAAA 195 ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| Sbjct 120 TCTATTATGGATATAATAATGCCTCCTGTTTACACCGTTGCCTTTCTTTTCTACACCAAA 179 Query 196 GATGATTTGATCTCGCAAGAACAAACGTCTCATACTCTCAAAACTTCCCTGTCCGAGATC 255 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 180 GATGATTTGATCTCCCAAGAACAAACGTCTCACACTCTCAAAACTTCCCTGTCCGAGATC 239 Query 256 TTGACAAAATTCCACCCTTTGGCCGGTAGAGTCAATGGAGTCACCATCAAGAGTACCGAC 315 |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||| Sbjct 240 TTGACAAAATTCCACCCTTTAGCCGGAAGAGTCAATGGAGTCACCATCGAGAGTAATGAC 299 Query 316 GAAGGAGCCGTCTTTGTGGAGGCACGCGTCGATAACTGCGATCTCTCTGGTTTTCTGAGA 375 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| Sbjct 300 GAAGGAGCCGTCTTTGTGGAGGCACGCGTCGATAACTGCAATCTCTCTAGTTTTCTTAGA 359 Query 376 TCCCCGGATACCGA-ATCACTCAAACAGTTGCTACCTGTAGATGACGAGCCCGCTCCTAC 434 ||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||||| Sbjct 360 TCCCCAGATACCGAGTTC-CTCAAACAGTTGCTTCCTGTAGATGACGAGCCAGCTCCTAC 418 Query 435 ATGGCCATTGCTTCTTGTGAAAGCAACCTACTTCCGATGTGGTGGCATGGCCATAGGACT 494 |||||| |||||||||||| |||| |||||||||| |||||||||||||||||| ||||| Sbjct 419 ATGGCCCTTGCTTCTTGTGCAAGCGACCTACTTCCAATGTGGTGGCATGGCCATCGGACT 478 Query 495 CTGCATCTCCCATAGGCTCGCCGATGCAGCCTCTCTCTCGATTTTCTTACAGGCTTGGGC 554 |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 479 CTGCATCTCCCATAAGCTTGCCGATGCAACCTCTCTCTCGATTTTCTTACAGGCTTGGGC 538 Query 555 AGCCACAGCTAGAGGAGAGAGCGACTTGGTGGCCAGTCCTGACTTTTG-TTCCACAAAAC 613 ||||||||| |||| |||||||||| |||||||||||||||| |||| ||||||||| | Sbjct 539 TGCCACAGCTCGAGGGGAGAGCGACTCGGTGGCCAGTCCTGAC-TTTGTTTCCACAAAGC 597 Query 614 TTTACCCCGCAGCAAATGAAGCCATTAAAATTCC-----AGG-GGAAGTAGTTAACAGAA 667 ||||||| || |||||||| || ||| ||||| ||| |||||| ||| |||| Sbjct 598 TTTACCCAGCGGCAAATGAGGCTATTGGTATTCCAAAAAAGGATCAAGTAGGTAAGAGAA 657 Query 668 CAAGTGTCACGAAGAGATTTGTGTTTGTAGCATCTAAAATCGAAGAGCTCAGGAACAAAG 727 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 658 CAAGTGTCACGAAGAGATTTGTGTTTGTAGAATCTAAGATCGAAGAGCTCAGGAACAAAG 717 Query 728 TCGCTAGTGATGTCGTGCCTCGACCCACGCGGGTCCAGAGCGTGACTTCACTTATATGGA 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TCGCTAGTGATGTCGTGCCTCGACCCACGCGGGTCCAGAGCGTGACTTCACTTATATGGA 777 Query 788 AATGTGTTGTGACTGCATCGACAGACACAATTCGTGAGAAAGCTCTGTTCCAACCGGCTA 847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 AATGTGTTGTGACTGCATCGACAGACACAATTCGTGAGAAAGCTCTGTTCCAACCGGCTA 837 Query 848 ACTTGCGCACCAAGATACCTTCCCTTTTGTCTGAAAACCAAATCGGTAACCTCTTGTTTA 907 |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct 838 ACTTGCGCCCCAAGATACCCTCCCTATTGTCTGAAAACCAAATCGGTAACCTCTTCTTCG 897 Query 908 ACTCCTTAATCTTGGATGGGAAAGCCGGGATGGATATTGTAGAAACTGTTAAGGAACTAC 967 | || ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 898 CCACCCTAACCTTGGATGGAAAAGCCGGGGTGGATATTGTAGAAACTGTTAAGGAACTAC 957 Query 968 AAAAAAGAGCCGAGGATTTATCCGGTTTGGTTCAAGATGAGGAAGGGTCATCAATGACTA 1027 ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| | Sbjct 958 AAAAAAGGGCCGAGGAGTTATCCGGTTTGGTTCAACATGAGGAAGGGTCATCAATGACGA 1017 Query 1028 TAGGTTGGAGATTGTTTGGTGAAATCATTAATTCCAAGTTTAACCGCGAAGATCATGACA 1087 |||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 1018 TAGGTTCGAGATTGTTTGGTGAAATCATTAATTCCAAGTTTAACCACGAGGTTCATGACA 1077 Query 1088 TGCATTCTGTAACTAGCTGGTGCAAGATTCCTCTTTATGATGCTTGCTTCGGGTGGGGAT 1147 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1078 TGCATTCTGTAACTAGCTGGTGCAAGATTCCTCTTTATAAGGCTTGCTTCGGGTGGGGAT 1137 Query 1148 CTCCGGTTTGGGTAGCTGGATCTGTTTCTCCGAATCTAGACTATGTAACCGTGTTGATCG 1207 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1138 CTCCGGTTTGGGTAGCTGGATCTGTTTCTCCGAATCTAGACGATGTAACCGTGTTGATCG 1197 Query 1208 ATTCTAAAGACGGACAAGGAATCGAAGCATGGGTGACATTGCCTCAAGAGAACATGTTAC 1267 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1198 ATTCTAAAGATGGACAAGGAATCGAAGCATGGGTGACATTGCATCAAGAGAACATGTTAC 1257 Query 1268 TGTTGGAGCAGAGCACAGAACTGCTTGCCTTTGCCTCCCCAAATCCAAGTGTATTGATCT 1327 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 TGTTCGAGCAGAGCACAGAACTGCTTGCCTTTGCCTCCCCAAATCCAAGTGTATTGATCT 1317 Query 1328 AAT 1330 ||| Sbjct 1318 AAT 1320 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56754465050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5