BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47950.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494841 jgi|Araly1|494841|fgenesh2_kg.8__657__AT5G47950.1 1923 0.0
> Ahg494841 jgi|Araly1|494841|fgenesh2_kg.8__657__AT5G47950.1
Length=1346
Score = 1923 bits (1041), Expect = 0.0
Identities = 1231/1323 (93%), Gaps = 12/1323 (1%)
Strand=Plus/Plus
Query 17 AAACAAAGAAAGGGAAGGAGGAAGATTAATCGATGGACACCATGAAGGTAGAAACT-ATT 75
|||||||| ||||||| || |||||| |||| ||||||||||||||||| |||| | |||
Sbjct 1 AAACAAAGGAAGGGAAAGAAGAAGATCAATCCATGGACACCATGAAGGTTGAAA-TCATT 59
Query 76 GGTAAAGAGATCATTAAGCCATCTGCAACAACTCCAACTGATCTCTCAACTCTTCAACTC 135
|||||||||||||| ||||||||||||| |||||||||||||||| || |||||||| ||
Sbjct 60 GGTAAAGAGATCATAAAGCCATCTGCAATAACTCCAACTGATCTCCCACCTCTTCAATTC 119
Query 136 TCTATTATGGATATACTAATGCCTCCGGTTTACGCCGTTGCCTTTCTTTTCTACACCAAA 195
||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 120 TCTATTATGGATATAATAATGCCTCCTGTTTACACCGTTGCCTTTCTTTTCTACACCAAA 179
Query 196 GATGATTTGATCTCGCAAGAACAAACGTCTCATACTCTCAAAACTTCCCTGTCCGAGATC 255
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 GATGATTTGATCTCCCAAGAACAAACGTCTCACACTCTCAAAACTTCCCTGTCCGAGATC 239
Query 256 TTGACAAAATTCCACCCTTTGGCCGGTAGAGTCAATGGAGTCACCATCAAGAGTACCGAC 315
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||
Sbjct 240 TTGACAAAATTCCACCCTTTAGCCGGAAGAGTCAATGGAGTCACCATCGAGAGTAATGAC 299
Query 316 GAAGGAGCCGTCTTTGTGGAGGCACGCGTCGATAACTGCGATCTCTCTGGTTTTCTGAGA 375
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 300 GAAGGAGCCGTCTTTGTGGAGGCACGCGTCGATAACTGCAATCTCTCTAGTTTTCTTAGA 359
Query 376 TCCCCGGATACCGA-ATCACTCAAACAGTTGCTACCTGTAGATGACGAGCCCGCTCCTAC 434
||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 360 TCCCCAGATACCGAGTTC-CTCAAACAGTTGCTTCCTGTAGATGACGAGCCAGCTCCTAC 418
Query 435 ATGGCCATTGCTTCTTGTGAAAGCAACCTACTTCCGATGTGGTGGCATGGCCATAGGACT 494
|||||| |||||||||||| |||| |||||||||| |||||||||||||||||| |||||
Sbjct 419 ATGGCCCTTGCTTCTTGTGCAAGCGACCTACTTCCAATGTGGTGGCATGGCCATCGGACT 478
Query 495 CTGCATCTCCCATAGGCTCGCCGATGCAGCCTCTCTCTCGATTTTCTTACAGGCTTGGGC 554
|||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 CTGCATCTCCCATAAGCTTGCCGATGCAACCTCTCTCTCGATTTTCTTACAGGCTTGGGC 538
Query 555 AGCCACAGCTAGAGGAGAGAGCGACTTGGTGGCCAGTCCTGACTTTTG-TTCCACAAAAC 613
||||||||| |||| |||||||||| |||||||||||||||| |||| ||||||||| |
Sbjct 539 TGCCACAGCTCGAGGGGAGAGCGACTCGGTGGCCAGTCCTGAC-TTTGTTTCCACAAAGC 597
Query 614 TTTACCCCGCAGCAAATGAAGCCATTAAAATTCC-----AGG-GGAAGTAGTTAACAGAA 667
||||||| || |||||||| || ||| ||||| ||| |||||| ||| ||||
Sbjct 598 TTTACCCAGCGGCAAATGAGGCTATTGGTATTCCAAAAAAGGATCAAGTAGGTAAGAGAA 657
Query 668 CAAGTGTCACGAAGAGATTTGTGTTTGTAGCATCTAAAATCGAAGAGCTCAGGAACAAAG 727
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 658 CAAGTGTCACGAAGAGATTTGTGTTTGTAGAATCTAAGATCGAAGAGCTCAGGAACAAAG 717
Query 728 TCGCTAGTGATGTCGTGCCTCGACCCACGCGGGTCCAGAGCGTGACTTCACTTATATGGA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCGCTAGTGATGTCGTGCCTCGACCCACGCGGGTCCAGAGCGTGACTTCACTTATATGGA 777
Query 788 AATGTGTTGTGACTGCATCGACAGACACAATTCGTGAGAAAGCTCTGTTCCAACCGGCTA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATGTGTTGTGACTGCATCGACAGACACAATTCGTGAGAAAGCTCTGTTCCAACCGGCTA 837
Query 848 ACTTGCGCACCAAGATACCTTCCCTTTTGTCTGAAAACCAAATCGGTAACCTCTTGTTTA 907
|||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 838 ACTTGCGCCCCAAGATACCCTCCCTATTGTCTGAAAACCAAATCGGTAACCTCTTCTTCG 897
Query 908 ACTCCTTAATCTTGGATGGGAAAGCCGGGATGGATATTGTAGAAACTGTTAAGGAACTAC 967
| || ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 898 CCACCCTAACCTTGGATGGAAAAGCCGGGGTGGATATTGTAGAAACTGTTAAGGAACTAC 957
Query 968 AAAAAAGAGCCGAGGATTTATCCGGTTTGGTTCAAGATGAGGAAGGGTCATCAATGACTA 1027
||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 958 AAAAAAGGGCCGAGGAGTTATCCGGTTTGGTTCAACATGAGGAAGGGTCATCAATGACGA 1017
Query 1028 TAGGTTGGAGATTGTTTGGTGAAATCATTAATTCCAAGTTTAACCGCGAAGATCATGACA 1087
|||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 1018 TAGGTTCGAGATTGTTTGGTGAAATCATTAATTCCAAGTTTAACCACGAGGTTCATGACA 1077
Query 1088 TGCATTCTGTAACTAGCTGGTGCAAGATTCCTCTTTATGATGCTTGCTTCGGGTGGGGAT 1147
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1078 TGCATTCTGTAACTAGCTGGTGCAAGATTCCTCTTTATAAGGCTTGCTTCGGGTGGGGAT 1137
Query 1148 CTCCGGTTTGGGTAGCTGGATCTGTTTCTCCGAATCTAGACTATGTAACCGTGTTGATCG 1207
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 CTCCGGTTTGGGTAGCTGGATCTGTTTCTCCGAATCTAGACGATGTAACCGTGTTGATCG 1197
Query 1208 ATTCTAAAGACGGACAAGGAATCGAAGCATGGGTGACATTGCCTCAAGAGAACATGTTAC 1267
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 ATTCTAAAGATGGACAAGGAATCGAAGCATGGGTGACATTGCATCAAGAGAACATGTTAC 1257
Query 1268 TGTTGGAGCAGAGCACAGAACTGCTTGCCTTTGCCTCCCCAAATCCAAGTGTATTGATCT 1327
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGTTCGAGCAGAGCACAGAACTGCTTGCCTTTGCCTCCCCAAATCCAAGTGTATTGATCT 1317
Query 1328 AAT 1330
|||
Sbjct 1318 AAT 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5