BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47960.1
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494853 jgi|Araly1|494853|fgenesh2_kg.8__669__AT5G47960.1 1312 0.0
Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871 91.6 9e-18
Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2 58.4 9e-08
> Ahg494853 jgi|Araly1|494853|fgenesh2_kg.8__669__AT5G47960.1
Length=819
Score = 1312 bits (710), Expect = 0.0
Identities = 784/820 (96%), Gaps = 3/820 (0%)
Strand=Plus/Plus
Query 25 TCTAAAATCTATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAATTTCAGAGCAATTTC 84
||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TCTTAAATCCATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAGTTTCAGAGCAATTTC 60
Query 85 AATCAGAAGATAGATTATGTGTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 144
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCAGAAGATAGATTATGTCTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 120
Query 145 TCTCAGCTTCTCGCTAGGTTTTCAAGAAACGAGTTCAGTATCGAATCTAAAGCAACGATC 204
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCTCAGCTTCTCGCTAGATTTTCAAGAAACGAGTTTAGTATCGAATCTAAAGCAACGATC 180
Query 205 GGTGTCGAGTTTCAGACAAGAACACTTGAAATCGATCGTAAAACTATCAAAGCTCAGATA 264
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 181 GGTGTCGAGTTTCAGACAAGAACACTTGAAATAGATCATAAAACTATCAAAGCTCAGATA 240
Query 265 TGGGACACTGCTGGTCAAGAACGGTATCGAGCGGTGACGAGTGCATACTACAGAGGAGCA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGGACACTGCTGGTCAAGAACGGTATCGAGCGGTGACGAGTGCATACTACAGAGGAGCA 300
Query 325 GTAGGGGCAATGTTAGTTTACGATATAACAAAACGACAGTCGTTTGATCATGTAGCGAGA 384
|||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 301 GTAGGGGCAATGCTAGTTTACGACATAACGAAACGACAGTCGTTTGATCATGTAGCGAGA 360
Query 385 TGGTTAGAAGAATTGAGAGGACATGCTGACAAAAACATTGTGATTATGCTAATAGGAAAC 444
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TGGTTAGAAGAATTGAGAGGACATGCTGACAAAAACATTGTGATTATGCTTATAGGAAAT 420
Query 445 AAAACTGATCTCGGGACACTTCGAGCTGTACCAACCGAGGATGCTAAAGAATTTGCTCAA 504
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 AAAACTGATCTTGGGACACTTCGAGCTGTACCAACTGAGGATGCTAAAGAATTTGCCCAA 480
Query 505 AGAGAAAATCTGTTTTTCATGGAGACATCAGCCTTGGATTCAAACAATGTTGAGCCTTCG 564
||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||
Sbjct 481 AGAGAAAATCTGTTTTTCATGGAGACATCGGCCCTGGATTCGAACAATGTTGAGCCGTCG 540
Query 565 TTCCTCACGGTTTTGACGGAAATATATCGAATTGTGAGTAAAAAGAATCTTGTTGCTAAT 624
|| ||||||||| |||||||||| |||||||| ||||| |||||||||||||| || |||
Sbjct 541 TTTCTCACGGTTCTGACGGAAATCTATCGAATAGTGAGCAAAAAGAATCTTGTAGCGAAT 600
Query 625 GAGGAAGGAGAATCTGGAGGAGACTCTTCTCTTTTGCAAGGAACTAAGATTGTTGTTGCT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGGAAGGAGAATCTGGAGGAGACTCTTCTCTTTTGCAAGGAACTAAGATTGTTGTTGCT 660
Query 685 GGAGAAGAGACTGAATCTAAAGGAAAAGGTTGTTGTGGAACATCATAGACtttttttcat 744
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 661 GGAGAAGAGACTGAATCTAAAGGAAAAGGTTGTTGTGGAACATCATAGAATTATTTTCAT 720
Query 745 gatcttttctctttttttttttGTTACTACCATTTCTTGTGATCATATTTCT--CTTTCT 802
|||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |
Sbjct 721 GATCTTTTCTCTTTTTTTTTCTGTTACTACCATTTCTTGTGATCTTATTTCTTTCTTT-T 779
Query 803 CTTTGACTGCATAAATAATGTGTCTACTTTGTATGTAAGA 842
||||||||||||||||| ||||||| ||||||||||||||
Sbjct 780 CTTTGACTGCATAAATATTGTGTCTTCTTTGTATGTAAGA 819
> Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871
Length=657
Score = 91.6 bits (49), Expect = 9e-18
Identities = 217/296 (73%), Gaps = 20/296 (7%)
Strand=Plus/Plus
Query 251 TCAAAGCTCAGATATGGGACACTGCTGGTCAAGAACGGTATCGAGCGGTGACGAGTGCAT 310
||||||||||||||||||||||||||||||||||| |||||||||| | || || || |
Sbjct 185 TCAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTATCGAGCCATCACTAGCGCGT 244
Query 311 ACTA-CAGAGGAGCAGTAGGGGCAATGTTAGTTTACGATATAACAAAACGACAGT--CGT 367
|||| | ||||||| || || || | |||| ||||| | ||| | || || | |
Sbjct 245 ACTATC-GAGGAGCCGTTGGTGCGTTACTAGTCTACGACGTGACACGGC-AC-GTGACAT 301
Query 368 TTGATCATGTAGCGAGATGGTTAGAAGAAT-TGAGAGGAC-ATGCTGACAAAAACATTGT 425
| || | || | ||||||| || ||| | | |||| || | | ||| ||||| |||
Sbjct 302 TCGAGAACGTTGAGAGATGGCTA-AAGGAGCTAAGAG-ACCACACGGACGCAAACACTGT 359
Query 426 GATTATGCTAATAGGAAACAAAACTGATCTCGGGA-CAC-TTCGAGCTGTAC-CAACCGA 482
||| ||||| |||| |||||| ||||| | | | ||| ||||||| | | | || ||
Sbjct 360 GATAATGCTCGTAGGTAACAAAGCTGATTT-GA-ATCACCTTCGAGCCAT-CTCTACGGA 416
Query 483 GGATGCT-AAAGAATTTGCTCAAAGAGAAAATCTGTTT-TTCATGGAGACATCAGC 536
|| | | ||||| ||||| | ||||| || | ||| ||||||||||| |||||
Sbjct 417 AGAAG-TGAAAGATTTTGCAGAGAGAGAGAA-CACTTTCTTCATGGAGACTTCAGC 470
> Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2
Length=1117
Score = 58.4 bits (31), Expect = 9e-08
Identities = 62/76 (82%), Gaps = 5/76 (7%)
Strand=Plus/Plus
Query 215 TTC-AGACAAGAACACTTGAAATCGATCGTAAAAC-TATCAAAGCT-CAGATATGGGACA 271
||| ||| |||||| ||||| | ||| | || | ||||||| | |||||||||||||
Sbjct 357 TTCAAGATAAGAACTGTTGAACTTGAT-GGGAAGCGTATCAAA-TTGCAGATATGGGACA 414
Query 272 CTGCTGGTCAAGAACG 287
||||||||||||||||
Sbjct 415 CTGCTGGTCAAGAACG 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32633216952
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5