BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47970.1
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949155 jgi|Araly1|949155|scaffold_801042.1 1905 0.0
Ahg494853 jgi|Araly1|494853|fgenesh2_kg.8__669__AT5G47960.1 448 1e-124
Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871 69.4 1e-10
Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2 58.4 2e-07
> Ahg949155 jgi|Araly1|949155|scaffold_801042.1
Length=1207
Score = 1905 bits (1031), Expect = 0.0
Identities = 1141/1195 (95%), Gaps = 3/1195 (0%)
Strand=Plus/Plus
Query 667 GGTGATACGAAGCCATGACAGTTTCAGAAGCTTATAGTCCACCTCTGTTCAGTATAGCCC 726
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 7 GGTGATACGAAGCCATGACAGTTTCAGACGCTTATAGTCCTCCTCTGTTCAGTATAGCCC 66
Query 727 CGATGATGGGATGGACAGACAATCATTACAGAACTCTAGCGCGTCTTATAACAAAACACG 786
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 67 CGATGATGGGATGGACAGACAATCACTACAGAACTCTTGCACGGCTTATAACAAAACACG 126
Query 787 CATGGCTCTACACTGAAATGTTAGCTGCTGAAACCATTGTCTATCAAGAAGATAACCTGG 846
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 127 CATGGCTCTACACGGAAATGTTAGCAGCTGAAACCATTGTCTATCAAGAAGATAACCTGG 186
Query 847 ACAGCTTTTTGGCATTCTCTCCAGACCAACATCCCATCGTTCTTCAAATTGGTGGAAGAA 906
||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 187 ACAGCTTTTTGGCATACTCTCCAGACCAGCATCCCATTGTTCTTCAAATTGGTGGAAGAA 246
Query 907 ACTTGGAAAATTTGGCTAAAGCAACCAGACTTGCTAATGCTTACGCCTATGATGAAATTA 966
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 247 ACTTGGAAAATTTGGCTAAAGCAACCAGGCTTGCTAATGCTTACGGCTATGATGAAATTA 306
Query 967 ATTTTAACTGTGGATGTCCTAGCCCAAAAGTAAGTGGACGAGGTTGTTTTGGTGCTCTTC 1026
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATTTCAACTGTGGATGTCCGAGCCCAAAAGTAAGTGGACGAGGTTGTTTTGGTGCTCTTC 366
Query 1027 TTATGCTTGACCCGAAGTTTGTTGGTGAGGCTATGTCTGTCATTGCAGCCAATACCAATG 1086
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 367 TTATGCTTGACCCGAAGTTTGTTGGTGAGGCTATGTCTGTCATTGCTGCCAATACCAATG 426
Query 1087 CAGCTGTCACTGTCAAATGTCGAATAGGTGTTGATGATCATGATTCATATAATGAGCTTT 1146
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CAGCTGTCACTGTTAAATGTCGAATAGGTGTTGATGATCATGATTCATATAATGAGCTTT 486
Query 1147 GTGATTTCATTCATATAGTTTCTTCATTATCTCCTACTAAGCATTTCATCATACATTCGC 1206
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTGATTTCATCCATATCGTTTCTTCATTATCTCCTACTAAGCATTTCATCATACATTCGC 546
Query 1207 GGAAGGCATTACTGTCTGGACTTAGCCCGTCAGATAACCGTCGAATTCCGCCCTTAAAAT 1266
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 547 GAAAAGCATTACTGTCTGGACTTAGCCCATCAGATAACCGTCGAATTCCGCCCTTAAAAT 606
Query 1267 ACGAGTTTTTCTTTGCCCTTTTGCGTGATTTCCCGGACTTAAAGTTCACAATAAATGGAG 1326
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 607 ACGAGTTTTTCTTTGCCCTCTTGCGTGATTTCCCGGACTTGAAGTTCACTATAAATGGAG 666
Query 1327 GCATAAACTCTGTGGTTGAGGCAGATGCCGCATTAAGGTCTGGAGCTCATGGCGTTATGC 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 667 GCATAAACTCTGTGGTTGAGGCAGATGCCGCATTAAGGTCTGGAGCTCATGGCGTGATGC 726
Query 1387 TTGGGCGTGCTGTATACTACAATCCCTGGCACATTTTGGGACACGTCGATACTGTAGTTT 1446
|||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 727 TTGGGCGTGCTGTATATTACAATCCCTGGCACACTTTGGGCCACGTCGATACTGTAATTT 786
Query 1447 ACGGATCTCCAAGCAGTGGAATTACAAGGCGACAGGTTCTTGAAAAATATAAACTATATG 1506
| |||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 787 ATGGATCTCCAAGCAGTGGAATTACAAGGCGACAGGTTCTTGAAAAATATCAAGTCTATG 846
Query 1507 GAGAGTCTGTTCTCGGGAAATATGGAAAAGGCCGACCAAATCTTCGAGATATAGTGAGGC 1566
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGGAGTCGGTTCTCGGGAAATATGGAAAAGGCCGACCAAATCTTCGAGATATAGTGAGGC 906
Query 1567 CATTGATCAATTTGTTCCACTCGGAGTCTGGAAATGGCCAGTGGAAACGTAGAACCGATG 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CATTGATCAATTTGTTCCACTCGGAGTCTGGAAATGGCCAGTGGAAACGTAGAACCGATG 966
Query 1627 CTGCTCTCTTGCACTGCACCACCTTACAATCATTCTTAGACGAAGTGTTACCAGCAATAC 1686
||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 967 CTGCTCTCTTGCATTGCACCACCTTAAAATCGTTCTTGGACGAAGTGTTACCAGCAATAC 1026
Query 1687 CCGACTATGTCCTCGATTCATCTGCTGTCAAAGAGGCGACTGGACGTGAAGATCTATTTG 1746
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CCGACTTTGTCCTTGATTCATCTGCTGTCAAAGAGGCGACTGGACGTGAAGATCTATTTG 1086
Query 1747 CAGATGTACAACGTTTGTTGCCTCCTCCTTACGAAAAAGAATCTTTCAAAGCATTGGAAA 1806
| ||||||| ||||||||||||||||||||| | ||||||||| | ||||||||||||||
Sbjct 1087 CGGATGTACGACGTTTGTTGCCTCCTCCTTATGGAAAAGAATCATCCAAAGCATTGGAAA 1146
Query 1807 GGATACCAACGAGACCTGTGATTCTTGATGAGGA--A-TGACAAATCTAtttttt 1858
|||| ||||| ||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 1147 GGATGCCAACAAGACCTGTGATTCTTGATGAGGAGGAATGACAAATCTAGTTTTT 1201
> Ahg494853 jgi|Araly1|494853|fgenesh2_kg.8__669__AT5G47960.1
Length=819
Score = 448 bits (242), Expect = 1e-124
Identities = 258/266 (97%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 42 TACCGTTCTTGACCAGCAGTGTCCCATATCTGAGCTTTGATAGTTTTACGATCGATTTCA 101
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 266 TACCGTTCTTGACCAGCAGTGTCCCATATCTGAGCTTTGATAGTTTTATGATCTATTTCA 207
Query 102 AGTGTTCTTGTCTGAAACTCGACACCGATCGTTGCTTTAGATTCGATACTGAACTCGTTT 161
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 206 AGTGTTCTTGTCTGAAACTCGACACCGATCGTTGCTTTAGATTCGATACTAAACTCGTTT 147
Query 162 CTTGAAAACCTAGCGAGAAGCTGAGATTTACCAACAGCAGAGTCGCCGATCAAGACTACC 221
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 CTTGAAAATCTAGCGAGAAGCTGAGATTTACCAACAGCAGAGTCGCCGATCAAGACTACC 87
Query 222 TTGAACACATAATCTATCTTCTGATTGAAATTGCTCTGAAATTTTGACATCGTTCACACC 281
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 86 TTGAAGACATAATCTATCTTCTGATTGAAATTGCTCTGAAACTTTGACATCGTTCACACC 27
Query 282 AAAATCACAAGCTTATAGATTTTAGA 307
|||||||||||||||| ||||| |||
Sbjct 26 AAAATCACAAGCTTATGGATTTAAGA 1
> Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871
Length=657
Score = 69.4 bits (37), Expect = 1e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 42 TACCGTTCTTGACCAGCAGTGTCCCATATCTGAGCTTTGA 81
|||| |||||||||||||||||||||||||||||||||||
Sbjct 224 TACCTTTCTTGACCAGCAGTGTCCCATATCTGAGCTTTGA 185
> Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2
Length=1117
Score = 58.4 bits (31), Expect = 2e-07
Identities = 62/76 (82%), Gaps = 5/76 (7%)
Strand=Plus/Minus
Query 45 CGTTCTTGACCAGCAGTGTCCCATATCTG-AGCTTTGATA-GTTTTACGATCGATTTCAA 102
||||||||||||||||||||||||||||| | ||||||| | || | ||| | |||||
Sbjct 430 CGTTCTTGACCAGCAGTGTCCCATATCTGCAA-TTTGATACGCTTCCC-ATCAAGTTCAA 373
Query 103 GTGTTCTTGTCT-GAA 117
|||||| ||| |||
Sbjct 372 CAGTTCTTATCTTGAA 357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77856460780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5