BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47990.1
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494842 jgi|Araly1|494842|fgenesh2_kg.8__658__AT5G47990.1 2523 0.0
Ahg493358 jgi|Araly1|493358|fgenesh2_kg.7__2791__AT4G15350.1 1338 0.0
Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1 348 1e-94
Ahg929929 jgi|Araly1|929929|scaffold_302386.1 195 1e-48
> Ahg494842 jgi|Araly1|494842|fgenesh2_kg.8__658__AT5G47990.1
Length=1715
Score = 2523 bits (1366), Expect = 0.0
Identities = 1602/1718 (93%), Gaps = 7/1718 (0%)
Strand=Plus/Plus
Query 1 ATGGCATCAATGATCACTGTTGACTTTGAAAACTGCTTCATCTTCCTCCTCTTATGTCTT 60
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCATCAATGATCACCGTTGACTTTGAAAACTGCTTCATCTTCGTCCTCTTATGTCTT 60
Query 61 TTCTCACGCCTCTCTTACGATCTTTTCTTCAGGAAAACAAAAGACTCACGAGCTGGCTGT 120
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTGTCACGCCTCTTTTACGATCTTTTCTTCAGGAAACCAAAAGACTCACGAGCTGGCTGT 120
Query 121 GCTCTTCCTCCGAGCCCTCCTTCATTACCAATCATTGGTCATCTTCACCTTATACTCTTT 180
| | |||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct 121 GATTTTCCTCCGAGCCCTCCATCATTACCGATCATTGGGCATCTTCACCTTATCCTCTTT 180
Query 181 GTCCCAATCCACCAGTCTTTCAAGAACATCTCATCTAAATATGGACCTCTCCTCCACCTC 240
|| |||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||
Sbjct 181 GTTCCAATCCACCAGTCTTTCCAGAAAATCGCATCCAAATATGGACCTCTCCTCCACCTC 240
Query 241 CGCTTCTTTAACTTCCCCATAGTCCTCGTCTCCTCGGCCTCAACGGCCTACGAGATCTTC 300
|||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 241 CGCTTCTTCAACTTCCCCATAGTCCTTGTCTCCTCGCCCTCAATGGCCTACGAGATCTTC 300
Query 301 AAGGCCCAAGACGTGAATGTCTCCTCTCGCCCTCCCCCTCCTATCGAGGAGTCTCTCATT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAGGCCCAAGACGTGAATGTCTCCTCTCGCCCTCCCCCTCCAATCGAGGAGTCTCTCATT 360
Query 361 TTAGGATCTTCCAGCTTCATCAACACTCCCTATGGAGATTACTCGAAGTTCATGAAGAAG 420
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 361 TTAGGATCGTCCAGCTTCATCAACACTCCCTACGGAGATTACTCGAAATTCATGAAGAAG 420
Query 421 TTCATGGTCCAAAAGCTGCTTGGACCACAAGCACTCCAACGGTCCCGAAATATCCGTGCA 480
||||||||||||||| |||| ||||| || |||||||||| ||| ||||| |||||||||
Sbjct 421 TTCATGGTCCAAAAGTTGCTCGGACCGCAGGCACTCCAACAGTCGCGAAAGATCCGTGCA 480
Query 481 GATGAGCTGGAACGGTTCTACAAAACCCTGCTTGATAAGGCGATGAAGAA-GCAGA-CTG 538
||||||||||| ||||||||||||| |||||||||||||||||||||||| | ||| | |
Sbjct 481 GATGAGCTGGATCGGTTCTACAAAAACCTGCTTGATAAGGCGATGAAGAATG-AGAGC-G 538
Query 539 TTGAGATTCGTAATGAAGCAATGAAGCTCACTAACAACACCATTTGCAAGATGATTATGG 598
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 TTGAGATTGGTAATGAAGCAATGAAGCTCACTAACAACACCATCTGCAAGATGATTATGG 598
Query 599 GGAGGAGTTGTTCAGAGGAGAACGGTGAGGCTGAGACAGTCAGAGGCTTGGTGACCGAGT 658
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 GGAGGAGTTGTTCCGAGGAGAACGGTGAGGCTGAGACAGTCAGAGGCTTGGTAACCGAGT 658
Query 659 CGATTTTCTTGACAAAGAAACATTTCTTGGGAGCCATGTTTCACAAACCACTTAAGAAGC 718
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 659 CGATTTTCTTGACAAAGAAACATTTCTTGGGGGCCATGTTTCACAAACCGCTTAAGAAGC 718
Query 719 TCGGGATCTCATTATTCGCAAAGGAATTGATGAATGTTTCCAACAGGTTTGATGAGCTAC 778
||||||||||||| |||||||||||||| |||| ||||||||||| |||||| ||||| |
Sbjct 719 TCGGGATCTCATTGTTCGCAAAGGAATTAATGAGTGTTTCCAACAAGTTTGACGAGCTGC 778
Query 779 TGGAGAAGATTCTTGTTGAACATGAAGAGAAATTGCAGGAGCATCATCAAACTAGTGACA 838
||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 779 TGGAGAAGATTCTTGTTAAACATGAAGAGAAATTGCAGGAGCATCATCAATGTACTGACA 838
Query 839 TGTTGGATATGTTGTTGGAAGCTTATGGAGACGAAAACGCAGAGTATAAGATCACTAGAG 898
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 839 TGTTGGATATGTTGTTGGAAGCGTATGGAGACGAAAAGGCAGAGTACAAGATCACTAGAG 898
Query 899 ACCAAATCAAGTCTTTGTTCGTGGATCTGTTCAGTGCAGGCACTGAAGCCTCGGCGAACA 958
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 899 ACCAAATCAAGTCCTTGTTCGTGGATCTGTTCAGTGCCGGCACTGAATCCTCGGCGAACA 958
Query 959 CTATACAGTGGACCATGGCGGAGATCATTAAGAATCCTAAGATTTGTGAGAGACTGAGAG 1018
||||||||||||| ||||||||||||||||| || ||||| |||| ||||||||||||||
Sbjct 959 CTATACAGTGGACAATGGCGGAGATCATTAACAAGCCTAACATTTCTGAGAGACTGAGAG 1018
Query 1019 AAGAAATTGATTCTGTTGTAGGGAAAACAAGGTTGGTTCAAGAGACTGATCTACCAAATC 1078
||||||| |||||||||||||| || | ||||||||||||||| ||||||||||| || |
Sbjct 1019 AAGAAATCGATTCTGTTGTAGGTAATATAAGGTTGGTTCAAGAAACTGATCTACCGAACC 1078
Query 1079 TCCCTTACTTGCAAGCAATAGTTAAAGAAGGGCTAAGATTGCATCCTCCGGGACCAGTGG 1138
|||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||| ||||
Sbjct 1079 TCCCTTACTTGCAAGCCATAGTCAAAGAAGGGCTACGATTGCATCCTCCAGGACCTGTGG 1138
Query 1139 TAAGGACGTTCAAAGAGACATGTGAAATCAAAGGATTCTACATACCGGAGAAGACAAGAC 1198
||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1139 TAAGGACGTTCCAAGAAACATGTGAAATCAAAGGATTCTACATACCGGAGAAAACACGAC 1198
Query 1199 TTTTTGTTAATGTTTATGCGATAATGAGAGATCCTGATTTCTGGGAAGACCCTGAGGAGT 1258
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 TTTTTGTTAATATTTATGCTATAATGAGAGATCCTGATTTCTGGGAAGATCCTGAGGAGT 1258
Query 1259 TTAAGCCAGAGAGGTTTTTAGCTTCTTCAAGATTAGGGGAAGAGGATGAGAAAAGAGAGG 1318
|||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 1259 TTAAACCAGAGAGGTTTTTAACTTCTTCAAGATTAGGGCAAGAAGATGAGAAAAGAGAGG 1318
Query 1319 ACATGCTAAAATACATTCCTTTCGGTAGCGGAAGGAGAGCTTGTCCTGGATCACATCTAG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACATGCTAAAATACATTCCTTTCGGTAGCGGAAGGAGAGCTTGTCCTGGATCACATCTAG 1378
Query 1379 CTTATACCGTTGTAGGAAGTGTAATTGGAATGATGGTGCAACACTTTGACTGGATAATCA 1438
||||| |||| || ||||||||||||||| ||||||||||| ||||||| |||| |||||
Sbjct 1379 CTTATGCCGTCGTTGGAAGTGTAATTGGAGTGATGGTGCAAAACTTTGATTGGAGAATCA 1438
Query 1439 AAGGAGAAAAAATCAACATGAAGGAGGGTGGAACAATGACCTTGACCATGGCTCACCCTC 1498
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1439 AAGGAGAAAAAATCAACATGAAGGAGGGTGGAACAATGACGTTGACCATGGCTCAGCCTC 1498
Query 1499 TTAAGTGCACTCCTGTTCCTCGAAACCTAAACACTTAAACTTCAAGTCTATAGATTCCCA 1558
|| ||||||||||||||||||||| ||||||||||||||||||| ||||| | |||||||
Sbjct 1499 TTCAGTGCACTCCTGTTCCTCGAACCCTAAACACTTAAACTTCATGTCTACAAATTCCCA 1558
Query 1559 ATAATTCTTGACGTGGAGATGTGAACTTGCTTTTGTTGTTTCAAATAATATCATGATT-A 1617
||||||||||| ||||||||| | ||||||| |||||||||||| ||||||||| || |
Sbjct 1559 ATAATTCTTGAATTGGAGATGTCAGCTTGCTTATGTTGTTTCAAACAATATCATG-TTCA 1617
Query 1618 CACATGTTTCCTGATTTCTTTGTTACCTTTTGTTTGGTTCAGTT-TGCTGTATGAAACTG 1676
|||||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||
Sbjct 1618 CACATGTTTCCTGATTTCGTTGTTACCTTTGGTTTGGTTCAGTTCTGTTGTATGAAACTG 1677
Query 1677 TATACATTTCTTAATGTTCATCATCTTATGTCTCTCAT 1714
|| |||||||| |||||||||||||||||||||| |||
Sbjct 1678 TAAACATTTCTAAATGTTCATCATCTTATGTCTCCCAT 1715
> Ahg493358 jgi|Araly1|493358|fgenesh2_kg.7__2791__AT4G15350.1
Length=1564
Score = 1338 bits (724), Expect = 0.0
Identities = 1268/1527 (83%), Gaps = 52/1527 (3%)
Strand=Plus/Plus
Query 38 TCATCTTCCTCCTCTTATGTCTTTTCTCACGCCTCTCTTACGATCTTTTCTTCAGGAAAA 97
|||||||| ||||||||||||| ||| || ||||| |||| ||| ||||||| ||||
Sbjct 14 TCATCTTCATCCTCTTATGTCTCTTCACATTCCTCTGTTACTCTCTCTTCTTCATGAAAC 73
Query 98 CAAAAGACTCACGAGCTGGCTGTG-CTCTTCCTCCGAGCCCTCCTTCAT-TACCAATCAT 155
|||| |||||||||| || | ||| | ||||||||||| |||||||| | | || |||||
Sbjct 74 CAAAGGACTCACGAGATGACCGTGAC-CTTCCTCCGAGTCCTCCTTC-TCTTCCTATCAT 131
Query 156 TGGTCATCTTCACCTTATAC-TCTTTGT-C-CCAATCCACCAGTC-TTTCAAGA-ACATC 210
|||||||||||||| || | ||| | | | || |||| |||| |||| ||| || ||
Sbjct 132 CGGTCATCTTCACCTAATTCTTCTCTCTACTTTAACCCACAAGTCTTTTC-AGAGAC-TC 189
Query 211 TCATCTAAATATGGACCTCTCCTCCACCTCCGCTTCTTTAAC-TTCCCCATAGTCCTCGT 269
||||| || ||||||||||| ||||| |||||| |||| || || ||||| ||||||||
Sbjct 190 TCATCCAAGTATGGACCTCTTCTCCATCTCCGCATCTTCCACGTT-CCCATTGTCCTCGT 248
Query 270 CTCCTCGGCCTCAACGGCCTACGAGATCTTCAAGGCCCAAGACGTGAATGTCTCCTCTCG 329
||||||||||||| ||||||||| ||||||| || ||||||||||||||| |||| |||
Sbjct 249 CTCCTCGGCCTCAGTGGCCTACGATATCTTCAGGGACCAAGACGTGAATGTATCCTTTCG 308
Query 330 CCCTCCCCCTCCTATCGAGGAGTCTCTCATTTTAGGATCTTCCAGCTTCATCAACACTCC 389
| | ||||||| ||||||||||||||| |||| ||||| | |||||||||| | ||||
Sbjct 309 GCATTCCCCTCCGATCGAGGAGTCTCTCTTTTTGGGATCGTATAGCTTCATCAGCGCTCC 368
Query 390 CTATGGAGATTACTCGAAGTTCATGAAGAAGTTCATGG-TCCAAAAGCTGCTTGGACCAC 448
||||||||||||| ||| ||||||| |||| |||||| | | |||| | |||||||| |
Sbjct 369 TTATGGAGATTACTGGAAATTCATGAGGAAGCTCATGGTTAC-AAAGATTCTTGGACCGC 427
Query 449 AAGCACTCCAACGGTCCCGAA-ATATCCGTGCAGATGAGCTGGAACGGTTCTACAAAACC 507
|||||||||| ||||| |||| || |||||| ||||||||| || |||||||||||||
Sbjct 428 AAGCACTCCAGCGGTCACGAAGAT-TCCGTGAAGATGAGCTTGATCGGTTCTACAAAAAT 486
Query 508 CTGCTTGATAAGGCGATG-AAGAAGCAGACTGTTGAGATTC-GTAATGAAGCAATGAAGC 565
|| || |||||||||| | |||||| ||| |||||||| || || | |||||| |||||
Sbjct 487 CTACTCGATAAGGCGA-GTAAGAAGGAGATTGTTGAGA-TCGGTGAGGAAGCAGCGAAGC 544
Query 566 TCACTAACAACACCATTTGCAAGATGATTATGGGGAGGAGTTGTTCAGAGGAGAACGGTG 625
||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 545 TCAATAACAACACCATCTGCAAGATGATCATGGGGAGGAGTTGTTCTGAGGAGAGCGGTG 604
Query 626 AGGCTGAGACAGTCAGAGGCTTGGTGACCGAGTCGATTTTCTTGACAAAGAAACA-TTTC 684
|||| |||| ||||||||||||||||| ||||| || ||||||||||||| | ||||
Sbjct 605 AGGCAGAGAGGGTCAGAGGCTTGGTGACTGAGTCAATGGCCTTGACAAAGAAA-ATTTTC 663
Query 685 TTGG-GAGCCATGTTTCACAAACCACTTAAGAAGCTCGGGATCTCATTATTCGCAAAGGA 743
|||| || |||| ||| ||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 664 TTGGCGA-CCATCTTTGACAAACCACTTAAGAAGCTCGGGATCTCACTGTTCAAAAAGGA 722
Query 744 -ATTGATGAATGTTTCCAACAGGTTTGATGAGCTACTGGAGAAGATTCTTGTTGAACATG 802
|| |||| ||||||| ||| ||| || ||||| || |||||||||||||| |||||
Sbjct 723 GATA-ATGAGTGTTTCCCACAAGTTCGACGAGCTGCTAGAGAAGATTCTTGTGGAACACA 781
Query 803 AAGAGAAATTGCAGGAGCATCATCAAACTAGTGACATGTTGGATATGTTGTTGGAAGCTT 862
|||||||| || | ||| |||||||| || ||||||| ||||| |||||||||||||||
Sbjct 782 AAGAGAAACTGGACGAGGATCATCAAGGTACTGACATGATGGATGTGTTGTTGGAAGCTT 841
Query 863 ATGGAGACGAAAACGCAGAGTATAAGATCACTAGAGACCAAATCAAGTCTTTGTTCGTGG 922
|| ||||||||||||||||||||| ||||| ||| |||| |||||||| ||||| ||||
Sbjct 842 ATAAAGACGAAAACGCAGAGTATAAAATCACAAGAAACCATATCAAGTCCTTGTTTGTGG 901
Query 923 ATCTGTTCAGTGCAGGCACTGA-AGCCTCGGCGAACACTATACAGTGGACCATGGCGGAG 981
| || |||| |||||||||||| | |||| ||| |||||||||||||| ||||||||||
Sbjct 902 AACTTTTCATTGCAGGCACTGACA-CCTCATCGACCACTATACAGTGGATCATGGCGGAG 960
Query 982 ATCATTAAGAATCCTAAGATT-TGTGAGAGACTGAGAGAAGAAATTGATTCTGTTGTAGG 1040
|||||||| |||| |||||| | ||||||||| ||||||||||| |||| ||||||||
Sbjct 961 ATCATTAACCATCCCAAGATTCT-TGAGAGACTAAGAGAAGAAATCAATTCCGTTGTAGG 1019
Query 1041 GAAAA-CAAGGTTGGTTCAAGAGACTGATCT-ACCAAATCTCCCTTACTTGCAAGCAATA 1098
||||| || | ||| ||||||| ||||| || ||| || |||||||||||||||||||||
Sbjct 1020 GAAAAGCA-GATTGATTCAAGAAACTGA-CTTACCCAACCTCCCTTACTTGCAAGCAATA 1077
Query 1099 GTTAAAGAAGGGCTAAGATTGCATCCTCCGGGACCAGTGGT---AAGGACGTTCAAAGAG 1155
| ||||||||||||||||||||||| ||||| || | | ||| ||| || ||||
Sbjct 1078 ATCAAAGAAGGGCTAAGATTGCATCCGCCGGGGCCTCTCTTGCCAAGAACGGTCCAAGAA 1137
Query 1156 ACATGTGAAATCAAAGGATTCTACATACCGGAGAAGACAAGACTTTTTGTTAATGT-TTA 1214
| |||||||| | ||| ||| ||||||| |||||||||| ||| |||||||| | |||
Sbjct 1138 AGGTGTGAAATTAGAGGGTTCCACATACCAGAGAAGACAATTCTTATTGTTAAT-TCTTA 1196
Query 1215 TGCGATAATGAGAGATCCTGATT-TCTGGGAAGACCCTGAGGAGTTTAAGCCAGAGAGGT 1273
||| ||||||||||||||||||| | |||||||| || ||||||||||| || |||||||
Sbjct 1197 TGCTATAATGAGAGATCCTGATTAT-TGGGAAGATCCGGAGGAGTTTAAACCTGAGAGGT 1255
Query 1274 TTTTAGCTTCTTC-AAGATTAGGGGAAGAGGATGAGAAAAGAGAGGACATGC-TAAAATA 1331
|||||| || ||| ||||| ||| ||||||| |||| |||||| | || | |||||||
Sbjct 1256 TTTTAGGTT-TTCCAAGATCAGGACAAGAGGACGAGATAAGAGATAA-ATTCCTAAAATA 1313
Query 1332 CATTCCTTTCGGTAGCGGAAGGAGAGCTTGTCCTGGATCACATCTAGCTTATACCGT-TG 1390
|||||||| | ||||||||||||| |||||||||| || |||||||| || | | ||
Sbjct 1314 TATTCCTTTTGCCAGCGGAAGGAGAGGTTGTCCTGGAACAAATCTAGCTCATGTC-TCTG 1372
Query 1391 TAGGAAGTGTAATTGGAATGATGGTGCAACACTTTGACTGGATAATCAAAGGAGAAAAAA 1450
|||||| | ||||| |||||||||| |||||| |||| |||||||||||| |||
Sbjct 1373 TAGGAACCGCGGTTGGAGTGATGGTGCAGTGCTTTGATTGGAAAATCAAAGGAGAGAAAG 1432
Query 1451 TCAACATGAAGGAGG--G-TGGAACAATGACCTTGACCATGGCTCACCCTCTTAAGTGCA 1507
|||||||||| |||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 1433 TCAACATGAATGAGGCTGCTGGAACAATGGTGTTGACCATGGCTCACCCTCTTAAGTGCA 1492
Query 1508 CTCCTGTTCCTCGAAACCTAAACACTT 1534
||||||||||||||| ||||||| |||
Sbjct 1493 CTCCTGTTCCTCGAACCCTAAAC-CTT 1518
> Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1
Length=1562
Score = 348 bits (188), Expect = 1e-94
Identities = 1062/1468 (72%), Gaps = 124/1468 (8%)
Strand=Plus/Plus
Query 127 CCTCCGAGCCCTCCTTCAT-TACCAATCATTGGTCATCTTCACCTTATACTCTTTGTC-C 184
||||| ||||||||||| | | || ||||||||||||||||||||| | ||||||| |
Sbjct 118 CCTCCAAGCCCTCCTTC-TCTTCCCATCATTGGTCATCTTCACCTTCTCCTCTTTG-CTT 175
Query 185 CAATCCACCAGT-CTTTCAAGAACATCTCATCTAAATATGGACCTCTCCTCCACCTCCGC 243
|||||||| ||| |||||| || |||||||| ||||| |||||| | ||||| || |||
Sbjct 176 CAATCCACAAGTGTTTTCAA-AAAATCTCATCCAAATACGGACCTTTTCTCCATCTTCGC 234
Query 244 -TTCTTTAACT-TCCCCA-TAGTCCTCGTCTCCTCGGCCTCAACGGCCTACGAGATCTTC 300
|| || | | |||||| || | || || ||||| |||||| |||| ||||| ||||||
Sbjct 235 ATT-TTCCA-TGTCCCCATTA-TTCTTGTGTCCTCTGCCTCAGCGGCTTACGATATCTTC 291
Query 301 AAGGCCCAAGACGTGAATGTCTCCTCTCGCCCTCCCCCTCCTATCGAGGAGTCTC-TCAT 359
||||| || || | || ||||| | ||| | | | ||||| || | | | |
Sbjct 292 AAGGCACACGATATTAAAGTCTCTTATCGAGGTGATGTTGCAATCGATGAAT-GCATTGT 350
Query 360 -TTTAGGATCTTCCAGCT-TCATCAACA-CTCCCTATGGAGATTACTCGAAGTTCATGAA 416
||| || ||||| | | | || | | |||| | || |||||||| ||| |||||||
Sbjct 351 GTTT-GGTTCTTCTGGATAT-TTC-AGAGCTCCATCTGAAGATTACTGGAAATTCATGAG 407
Query 417 GAAG-T--TCATGGTCCAAAAGCTGCTTGGACCACAAGCACTCCAACGGTCCCGAAATAT 473
|||| | |||||| | | || ||||||||| ||||| || | ||| | || | |
Sbjct 408 GAAGCTCATCATGG--CTAGGGC-GCTTGGACCCCAAGCGCTAGAGCGGACACGTGGTGT 464
Query 474 CCGTGCAGATGAGCTGGAACGG-TTCTACA-AAACCCTGCTTGATAAGGCGATGAAGAAG 531
|||| || |||| | ||| || ||| | | ||| | || ||||||||||| || ||
Sbjct 465 TCGTGTAGCTGAGTTAGAAAGGTTTC-ATAGAAA-TATACTCGATAAGGCGATTAAAAAA 522
Query 532 CAGA-CTGTTGAGATTC-GT-AATGAAGCAATGA-AGCTCACTAACAACACCATTTGCAA 587
|| | | || ||| || || || ||||||| || | ||| |||||||||| | | ||
Sbjct 523 CAAAGC-CTTAAGA-TCGGTGAA-GAAGCAAGGATA-CTCGTTAACAACACCCTCGGAAA 578
Query 588 GATGATTATGGGGAGGAGTTGTTCAG-AGGAGAACGGTGA-GGCTGA-GACAG--TCAGA 642
|||| | || || |||| ||||| | |||||| ||| || || | || |||||
Sbjct 579 AATGAGCCTTGGAAGTAGTTTTTCAGTA-GAGAACAATGATGG--GACAAAAGTTTCAGA 635
Query 643 GGCTTGGTGACCGAG-TCGATTTTCTTGACAAAGAAACATTTCT-TGGGAGC-CATGTTT 699
|| | | | || | | | | ||| | | || ||| | ||| | | || |||
Sbjct 636 -ATTTTCT-ATCAAGTTAGCTGAT-TTGTCTCA-AATGTTTTGTGTGGCA-CAAATATTT 690
Query 700 CACAAACCACTTA-AGAAGCTCGGGATCTCAT-TATTCGCA-AAGGA-ATTGATGAATGT 755
|| || || | || ||||| | |||||||| | | || | ||| | ||| ||| ||||
Sbjct 691 CATAAGCCGC-TAGAGAAGGTGGGGATCTC-TCT-TTTAAAGAAGCAGATT-ATGGATGT 746
Query 756 TTCCA-ACAGGTTTGATGAGCTACTGGAGAAGATTCTTGTTGAA-CATGAAGAG-AAATT 812
|| || | | ||||| ||| | || || || ||||||| |||| | | || | ||| |
Sbjct 747 TT-CACATAAATTTGAGGAGTTGCTAGAAAATATTCTTG-TGAAGTACG-AGGGAAAAAT 803
Query 813 GCAGGAGCATCATCAAACTAGTGACA-TGTTGGATATGTTGTTGGAAGCTTATGGAGACG 871
| | || | ||||||| || ||| | | ||||| || |||| ||||||| |||||
Sbjct 804 GAACGA-C--CATCAAAGTACTGA-ATTCATGGATGCATTATTGGCAGCTTATCAAGACG 859
Query 872 AAAACGCAGAGTATAAGATCACTAGAGA-CCAAATCAAGTCTTTGTTCGTGGATCTGTTC 930
||||||||||||||||||||||||| || ||| |||||| | || || | ||| || |||
Sbjct 860 AAAACGCAGAGTATAAGATCACTAG-GAACCATATCAAGGCATTATTAGCGGAGCTATTC 918
Query 931 AGTGCAGGCACTGAAG-CCTCGGCG--AACACTATAC-AGTGGACCATGGCG-GAGATCA 985
|| || | ||| | |||| | |||| | || | ||| | |||| | || |||
Sbjct 919 TTTGGAGCCGGTGA-GTCCTCTTCTTCAACA--ACACGA-TGGGCAATGG-GAGAAATC- 972
Query 986 TT-AAGAATCCTAAGAT-TTGTGAGAGACTGAGAGAAGAAATTGATTCT-GTTGTAGGGA 1042
|| || || |||||||| || ||||||| ||||||||||||| |||| | || || ||||
Sbjct 973 TTCAACAACCCTAAGATCTT-TGAGAGATTGAGAGAAGAAATAGATT-TAGTGGT-GGGA 1029
Query 1043 AA-ACAAGGTTGGTTCAAGAGACTGATCTACCAAATCTCCCTTACTTGCAAGCAATAGTT 1101
|| ||||||||| ||||||| | |||||||||||| || || |||||||||||| | ||
Sbjct 1030 AATACAAGGTTGATTCAAGAAAGTGATCTACCAAAACTTCCATACTTGCAAGCAGTCGTC 1089
Query 1102 AAAGAAGGGCTAAGATTGCATCCTCCGGGACCAGTGGT---AAG-GACGTT-CAAAGAGA 1156
|||||| ||||||||||| || |||| | || | ||| || || || | |||
Sbjct 1090 AAAGAATCTCTAAGATTGCACCCGGTGGGAGCGGTCTTGCCAAGAGAATTTACACA-AGA 1148
Query 1157 CATGTGAA-ATCAAAGGATTCTACATACCGGAGAAGA-CAAGACTTTTTGTTAATGTTTA 1214
||| || || ||| ||||| |||| ||| || || |||| | | |||| |||
Sbjct 1149 T-TGT-AACATTGGAGGGTTCTATATACATGAGG-GAACATCACTTGTCATCAATGCTTA 1205
Query 1215 TGCGATAATGAGAGATCCTGAT-TTCTGGGAAGACCCTGAGGAGTTTAAGCCAGAGAGGT 1273
| | |||||||||||||||||| || |||||||| ||| | |||||||| ||||||||||
Sbjct 1206 TTCTATAATGAGAGATCCTGATATT-TGGGAAGATCCTAATGAGTTTAAACCAGAGAGGT 1264
Query 1274 TTTTAGCTTCTTCAAGATTAGGGGAAGAGGATGAGAAAAGAGAGGACATGCTAAAATACA 1333
|| || || ||||||||| ||| ||||||| ||||||| |||| | | ||||| | |
Sbjct 1265 TTCTAACTACTTCAAGATCAGGACAAGAGGAAGAGAAAAAAGAGCAAACACTAAAGTTCC 1324
Query 1334 TTCCTTTCGGTAGCGG-AAGGAGAGCTTGTCCTGGATCACATCTAGCTTATACCGTT-GT 1391
| ||||| || |||| |||||||| |||||||||| | |||| | ||||||| || ||
Sbjct 1325 TCCCTTTTGGC-GCGGGAAGGAGAGGATGTCCTGGATTAAATCTTGGTTATACC-TTAGT 1382
Query 1392 AGGAAGTGTAATTGGAATGATGGTGCAACACTTTGACTGG-ATAATCAAAGGAGAAAAAA 1450
|| || ||||||| ||||||||||| |||||||||| | | || ||||||| |||
Sbjct 1383 AGAAACCACAATTGGAGTGATGGTGCAATGCTTTGACTGGGAGA-TCGAAGGAGATAAAG 1441
Query 1451 TCAACATG-AAGGAGGGT--GGAACAATGAC----CTTG-ACCATGGCTCA-CCCTCTTA 1501
|||||||| ||| ||| | ||| || || |||| | ||||||| ||| ||||
Sbjct 1442 TCAACATGGAAGAAGGTTCAGGATTAA-GATTTTTCTTGGATT-TGGCTCATCCC-CTTA 1498
Query 1502 AGTGCACTCCTGTTCCTCGAAACCTAAA 1529
|||||||||||||| |||||| | ||||
Sbjct 1499 AGTGCACTCCTGTTGCTCGAATCATAAA 1526
> Ahg929929 jgi|Araly1|929929|scaffold_302386.1
Length=355
Score = 195 bits (105), Expect = 1e-48
Identities = 269/343 (78%), Gaps = 32/343 (9%)
Strand=Plus/Plus
Query 1202 TTGTTAATGTTTATGCGATAATGAGAGATCCTGATTTC-TGGGAAGACCCTGAGGAGTTT 1260
||||||||| |||||| || |||||||||||||| ||| |||||||| ||| | ||||||
Sbjct 4 TTGTTAATGCTTATGCTATTATGAGAGATCCTGA-TTCTTGGGAAGATCCTAATGAGTTT 62
Query 1261 AAGCCAGAGAGGTTTTTAGCTTCTTCAAGATTAGGGGAAGAGGATGAGAAAAGAGAGGAC 1320
||||||||||||||||||||||||| || || | ||| | || | ||| | |
Sbjct 63 AAGCCAGAGAGGTTTTTAGCTTCTT-----TT-GG--ATCAGG--GC-AAGA-AGATG-C 109
Query 1321 ATGCTAAAATACATTCCTTTCGGTAGCGGAAGGAGAG-CTTGTCCTGGA-TCACATCT-A 1377
| || || |||||||||||||| ||||||||||||| || |||| ||| | | |||| |
Sbjct 110 A--CTTAAGTACATTCCTTTCGGGAGCGGAAGGAGAGGCT-GTCCGGGAGTAA-ATCTGA 165
Query 1378 GCTTATACCGTTGTAGGAAGTGTAATTGGAATGATGGTGCAACACTTTGACTGGATAATC 1437
| ||| | | ||||||||| | ||||||||||||||||| ||||||||||| ||||
Sbjct 166 G-TTACATCTTTGTAGGAACCGCGGTTGGAATGATGGTGCAATGCTTTGACTGGAAAATC 224
Query 1438 AAAGGAGAAAAAATCAACATG-AAGGAGGG--T-GGAACAATGA-CCTTGACCATGGCTC 1492
||||||||||| | ||||| ||| ||| | ||| | ||| ||| ||||||||| |
Sbjct 225 AAAGGAGAAAAGGTTGACATGGAAG-AGGCCATTGGAGGACTGAACCT-GACCATGGCGC 282
Query 1493 A-CCCTCTTAAGTGCACTCCTGTTCCTCGAAACCTAAACACTT 1534
| ||| || ||||||| ||||||| || ||| ||||||| |||
Sbjct 283 ATCCC-CTCAAGTGCATTCCTGTTGCTAGAACCCTAAACCCTT 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66848379975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5