BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48000.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916217 jgi|Araly1|916217|Al_scaffold_0008_968 2167 0.0
Ahg936727 jgi|Araly1|936727|scaffold_500918.1 364 1e-99
> Ahg916217 jgi|Araly1|916217|Al_scaffold_0008_968
Length=1434
Score = 2167 bits (1173), Expect = 0.0
Identities = 1351/1438 (94%), Gaps = 8/1438 (1%)
Strand=Plus/Plus
Query 184 ATGAGCTTCGTGTGGTCCGCTGCGGTGTGGGTCATAGCTGTAGCCGCTGTTGTGATTAGC 243
||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 1 ATGAGCTTCGTCTGGTCCGCTGCGGTGTGGGTCATAACTGTAGCAGTTGTTGTGATTAGC 60
Query 244 AAATGGTTATACCGATGGTCGAACCCGAAGTGCAATGGCAAGTTACCACCGGGATCAATG 303
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AAATGGTTATACCGGTGGTCGAACCCGAAGTGCAATGGCAAGTTACCTCCGGGATCAATG 120
Query 304 GGTTTACCGATCATCGGAGAGACATGCGACTTCTTTGAGCCCCATGGATTATACGAGATC 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GGTTTACCGATCATCGGAGAGACATGCAACTTCTTTGAGCCCCATGGATTATACGAGATC 180
Query 364 TCACCCTTTGTCAAGAAGAGGATGTTAAAGTACGGGCCATTGTTTCGGACAAATATTTTC 423
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 181 TCACCCTTTGTCAAGAAGAGGATGTTAAAGTACGGGCCATTGTTTCGGACCAACATTTTC 240
Query 424 GGATCGAACACCGTGGTTTTGACAGAACCTGATATCATCTTCGAAGTTTTTCGGCAAGAG 483
||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 241 GGATCCAACACCGTGGTTTTGACAGAACCTGATATCATCTTTGAGGTTTTCCGACAAGAG 300
Query 484 AACAAGTCTTTTGTGTTTAGCTATCCAGAAGCTTTTGTCAAGCCATTTGGAAAAGAAAAC 543
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 301 AACAAGTCTTTTGTGTTTAGCTATCCAGAAGCCTTTGTAAAGCCATTTGGAAAAGAAAAC 360
Query 544 GTGTTCCTCAAACATGGAAACATCCACAAGCACGTCAAGCAAATCAGTCTTCAACATCTT 603
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 361 GTGTTCCTCAAACATGGGAACATCCACAAGCACGTCAAACAAGTCAGTCTTCAACATATT 420
Query 604 GGCTCTGAGGCTTTaaaaaaaaaGATGATAGGAGAAATAGACAGAGTAACCTATGAGCAT 663
||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 421 GGCTCTGAGGCCTTAAAAAAAAAGCTGATTGGAGAAATAGACAGAGTGACCTATGAGCAT 480
Query 664 CTTAGATCGAAGGCTAACCAGGGTAGCTTCGATGCTAAGGAGGCAGTTGAAAGTGTT-AT 722
|||| ||| ||||||| ||||||||||||| ||||||||||| |||||||||| || ||
Sbjct 481 CTTAAATCAAAGGCTAGCCAGGGTAGCTTCAATGCTAAGGAGACAGTTGAAAGC-TTGAT 539
Query 723 AATGGCGCACTTGACCCCAAAGATAATAAGTAACCTCAAACCAGAAACACAAGCAACTCT 782
|||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct 540 AATGGCACACCTGACCCCGAAGATAATAAGTAACCTCAAACCAGAAACACAAACAAATCT 599
Query 783 TGTGGACAATATAATGGCCCTAGGATCTGAATGGTTTCAGTCACCCTTGAAGCTTACGAC 842
|||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||
Sbjct 600 TGTGGACAATATAATGTCCCTAGGATCTGAATGGTTTCAGTCACCGTTAAAGCTTACGAC 659
Query 843 TTTGATTTCTATCTACAAAGTCTTTATTGCACGTAGATACGCCCTCCAGGTGATAAAGGA 902
| ||||||||||| ||||||||||||||| || ||| |||| || ||||||||||||||
Sbjct 660 ATGGATTTCTATCTTCAAAGTCTTTATTGCCCGAAGAGACGCACTGCAGGTGATAAAGGA 719
Query 903 CGTTTTCACGAGGAGGAAAGCGTCCAGAGAAATGTGCGGAGACTTCCTCGACACAATGGT 962
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGTTTTTATGAGGAGGAAAGCGTCCAGAGAAATGTGCGGAGACTTCCTCGACACAATGGT 779
Query 963 AGAAGAGGGGGAGAAAGAAGACGTCATTTTTAATGAAGAAAGTGCTATAAATCTCATATT 1022
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct 780 AGAAGAGGGGGAGAAAGAAGAGGTCATTTTTAATGAAGAAGGTGCTATAAATCTCATCTT 839
Query 1023 CGCTATTTTGGTCGTCGCTAAAGAATCTACCTCTTCCGTTACTAGCTTGGCCATCAAATT 1082
||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 CGCTATTCTGGTAGTCGCTAAAGAATCAACCTCTTCCGTTACTAGCTTGGCCATCAAATT 899
Query 1083 TCTTGCCGAAAACCATAAAGCTCTCGCAGAGTTGAAGAGGGAGCATGCGGCCATCCTTCA 1142
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 900 TCTTGCCGAAAACCATAAAGCTCTCGCAGAGTTGAAGAGAGAGCATGAGGCCATCCTTCA 959
Query 1143 AAATAGAAATGGTAAAGGAGCTGGAGTTAGCTGGGAAGAATACAGACACCAAATGACTTT 1202
||||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||
Sbjct 960 AAATAGAAATGATAAAGAAGCTGGAGTTGGCTGGGAAGAATACAGACACCACATGACTTT 1019
Query 1203 CACTAACATGGTGATAAATGAGACTCTTCGAATGGCAAACATGGCTCCTATAATGTATAG 1262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CACTAACATGGTGATCAATGAGACTCTTCGAATGGCAAACATGGCTCCTATAATGTATAG 1079
Query 1263 AAAGGCTGTGAACGATGTCGAAATCAAAGGTTACACAATTCCAGCGGGCTGGATTGTGGC 1322
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 GAAGGCTGTGAACGATGTCGAAATCAAAGGATACACAATTCCAGCGGGCTGGATTGTGGC 1139
Query 1323 GGTTATACCACCAGCTGTCCATTTCAATGATGCTATTTATGAGAATCCTTTGGAGTTCAA 1382
||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1140 GGTTATACCTCCAGCCGTCCATTTCAATCATGAGATTTATGAGAATCCTTTGGAGTTCAA 1199
Query 1383 TCCATGGAGATGGGAGGGGAAAGAGTTGCGGTCTGGATCTAAGACGTTCATGGTGTTTGG 1442
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1200 TCCATGGAGATGGGAGGGGAAAGAGTTGCGGTCTGGATCTAAGACGTTCATGGTATTTGG 1259
Query 1443 AGGTGGAGTGAGACAGTGTGTCGGCGCGGAGTTTGCGAGACTACAAATTTCTATCTTCAT 1502
||| |||||||| || ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1260 AGGAGGAGTGAGGCAATGTGTCGGCACGGAGTTTGCGAGACTCCAAATTTCTATCTTCAT 1319
Query 1503 TCATCATCTTGTAAC-AACCTACGATTTCTCATTGGCCCAAGAAT-CGGAGTTCATCCGT 1560
||||||||||||||| || || ||||||||| |||||||||||| || | |||||||||
Sbjct 1320 TCATCATCTTGTAACCAAA-TATGATTTCTCACTGGCCCAAGAATTCG-ATTTCATCCGT 1377
Query 1561 GCACCACTCCCAT-ACTTCCCCAAAGGACTGCCTATCAAGATTTCCCAGTCACTCTAG 1617
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GCACCACTACC-TCACTTCCCCAAAGGACTGCCTATCAAGATTTCCCAGTCACTCTAG 1434
> Ahg936727 jgi|Araly1|936727|scaffold_500918.1
Length=1465
Score = 364 bits (197), Expect = 1e-99
Identities = 424/530 (80%), Gaps = 30/530 (6%)
Strand=Plus/Plus
Query 1069 TTGGCCATCAAATTTC-TTGCCG-AAAACCATAAAGCTCTCGCAGAGTTGAAGAGGGAGC 1126
|||||| | ||| ||| || || |||||| ||||| | | ||||||||||||| || |
Sbjct 891 TTGGCCGT-AAACTTCATT-ACGAAAAACCCTAAAGTTTTATCAGAGTTGAAGAGAGAAC 948
Query 1127 ATGCGGCCATCCTTCAAAATAGAAATGGT-AAAGGA-GCTGGAGTTAGCTGGGAAGAATA 1184
|| ||| || |||||||| ||| ||| | ||| | ||||| ||| ||||||||||||
Sbjct 949 ATAAGGCGATTCTTCAAAACAGAGATGATGAAA--ATTCTGGAATTACCTGGGAAGAATA 1006
Query 1185 CAGACACCAA-ATGACTTTCACTAACATGGTGATAAATGAGACTCTTCGAATGGCAAACA 1243
|||||| ||| |||||||| || ||||||||||| || ||||||||||||||||||||
Sbjct 1007 CAGACA-CAACATGACTTTTACCAACATGGTGATTAAGGAGACTCTTCGAATGGCAAATG 1065
Query 1244 TGGCTCCTATAATGTATAGAAAGGCTGTGAACGATGTCGAAATCAAAGGTTACACAATTC 1303
|||||||| |||||| |||||||||| |||||||||||||||||||||| || |||||||
Sbjct 1066 TGGCTCCTGTAATGTTTAGAAAGGCTTTGAACGATGTCGAAATCAAAGGATATACAATTC 1125
Query 1304 CAGCGGGCTGGATTGTGGCGGTTATACCACCAGCTG-TCCATT-TCAATGATGCTATTTA 1361
||||||| ||||| |||| |||| | ||| || | |||| | || || | || ||
Sbjct 1126 CAGCGGGTTGGATGGTGGTGGTTGCAAGTTCAG-TGATTCATTAT-GATCATACGATATA 1183
Query 1362 TGAGAATCCTTTGGAGTTCAATCCATGGAGATGGGAGGGGAAAGAGTTGCGGT-CTGGAT 1420
||| || ||||| ||||| || ||||||||||||||||| |||||| ||| | ||| |
Sbjct 1184 TGAAAACCCTTTTGAGTTTAACCCATGGAGATGGGAGGGCAAAGAGCTGC-TTAATGGTT 1242
Query 1421 CTAAGACGTTCATGGTGTTTGGAGGTGGAGTGAGA-CAGTGTGTCGGCGCGGAGTTTGCG 1479
||||||||||||||||||||||||||||||||||| | |||| | || || ||||||||
Sbjct 1243 CTAAGACGTTCATGGTGTTTGGAGGTGGAGTGAGATC-GTGTATTGGTGCAGAGTTTGCA 1301
Query 1480 AGACTACAAATTTCTATCTTCATTCATCA-TCTTGTAAC-AACCTACGATTTCTC-ATTG 1536
|| || || ||||| || || || || || |||||| || ||| ||||||||||| || |
Sbjct 1302 AGGCTTCAGATTTCAATATTTATACA-CAATCTTGTCACCAAC-TACGATTTCTCGAT-G 1358
Query 1537 GCCCAAGAAT-CGGAGTTCA-TCCGTGCACCACTCCCATACTT-CCCCAA 1583
| |||||| | || ||| || || || | ||||| || | ||| ||||||
Sbjct 1359 GTCCAAGACTGCGAAGT-CACTC-GTACTCCACTGCCTT-CTTTCCCCAA 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5