BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48010.2
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916218 jgi|Araly1|916218|Al_scaffold_0008_969 3485 0.0
Ahg493357 jgi|Araly1|493357|fgenesh2_kg.7__2790__AT4G15370.1 2396 0.0
Ahg316749 jgi|Araly1|316749|fgenesh1_pm.C_scaffold_2001782 1378 0.0
> Ahg916218 jgi|Araly1|916218|Al_scaffold_0008_969
Length=2301
Score = 3485 bits (1887), Expect = 0.0
Identities = 2173/2311 (94%), Gaps = 20/2311 (1%)
Strand=Plus/Plus
Query 42 ATGTGGAGGCTGAGAAC-TGGACCGAAGGCTGGAGAGGATACTCACCTGTTCACCACCAA 100
|||||||||||||| || |||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 1 ATGTGGAGGCTGAG-ACTTGGACCGAAGGCCGGAGAAGATACTCACTTGTTCACCACCAA 59
Query 101 CAACTATGCAGGGAGGCAGATTTGGGAATTTGATGCCAACGCAGGCTCTCCACAAGAAAT 160
||||||||| ||||||||||||||||| || ||||||||||||||||||||| | ||| |
Sbjct 60 CAACTATGCCGGGAGGCAGATTTGGGAGTTCGATGCCAACGCAGGCTCTCCAGAGGAACT 119
Query 161 TGCCGAGGTAGAGGATGCTCGGCACAAATTCTCAGACAACAC-GTCACGTTTCAAGACTA 219
||||||||||||||||||||| || || || ||| ||||| | ||||||||||||||| |
Sbjct 120 TGCCGAGGTAGAGGATGCTCGTCAGAATTTTTCAAACAAC-CGGTCACGTTTCAAGACCA 178
Query 220 CTGCCGATCTCTTATGGCGCATGCAGTTTCTTAGGGAGAAGAAATTCGAACAGAAGATTC 279
||| |||||| ||||||| ||||||||||| ||||||||||||||||| || |||||||
Sbjct 179 GTGCAGATCTCCTATGGCGGATGCAGTTTCTCAGGGAGAAGAAATTCGAGCAAAAGATTC 238
Query 280 CACGAGTGATAATCGAGGATGC-AAGAAAGATAAAGTACGAAGATGCAAAGACAGCATTG 338
||||||||||| | |||||||| | |||| ||||||||||||||||||||||| ||||||
Sbjct 239 CACGAGTGATAGTAGAGGATGCGAGGAAA-ATAAAGTACGAAGATGCAAAGACCGCATTG 297
Query 339 AAAAGAGGGTTACTCTATTTCACAGCCTTGCAGGCTGATGATGGACACTGGCCAGCTGAA 398
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGAAGAGGGTTACTCTATTTCACAGCCTTGCAGGCTGATGATGGACACTGGCCAGCTGAA 357
Query 399 AACTCTGGCCCAAATTTCTATACCCCTCCTTTTTTGATATGCTTGTACATCACTGGACAT 458
|||||||| ||||||||||| |||| ||||||||||||||| |||||||||||||| ||
Sbjct 358 AACTCTGGTCCAAATTTCTACGCCCCACCTTTTTTGATATGCCTGTACATCACTGGAAAT 417
Query 459 CTGGAGAAAATCTTCACTCCCGAGCATGTTAAAGAGTTACTACGTCACATCTACAACATG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTGGAGAAAATCTTCACTCCCGAGCATGTTAAAGAGTTACTACGTCACATCTACAACATG 477
Query 519 CAGAACGAAGATGGTGGGTGGGGTTTACACGTAGAAAGCCACAGTGTTATGTTCTGTACA 578
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 CAGAACGAAGATGGTGGGTGGGGATTACACGTAGAAAGCCACAGTGTTATGTTCTGTACA 537
Query 579 GTCATTAATTACGTCTGTCTACGAATTGTGGGAGAAGAAGTCGGTCATGATGATCAAAGA 638
||||| || ||| | ||| || |||||||||| ||||||| | |||||||||||||| ||
Sbjct 538 GTCATCAACTACATTTGTTTAAGAATTGTGGGCGAAGAAGCCAGTCATGATGATCAAGGA 597
Query 639 AATGGTTGTGCAAAGGCTCATAAGTGGATCATGGACCATGGTGGTGCTACCTACACGCCC 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATGGTTGTGCAAAGGCTCATAAGTGGATCATGGACCATGGTGGTGCTACCTACACGCCC 657
Query 699 TTGATCGGAAAAGCGTTGCTTTCGGTTCTTGGAGTGTATGATTGGTCTGGCTGCAATCCT 758
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 658 TTGATAGGAAAAGCGTTACTATCGGTTCTTGGAGTGTATGATTGGTCTGGATGCAATCCT 717
Query 759 ATACCTCCAGAGTTCTGGTTGCTTCCGTCTTCTTTTCCTGTTAATGGAGG--G-ACTCTC 815
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 718 ATACCTCCAGAGTTCTGGTTGCTTCCGTCTTCTTTTCCTGTTAATGGAGGTTGGACTCTC 777
Query 816 TGGATTTATTTACGGGATACTTTCATGGGGTTGTCATACTTGTATGGTAAAAAATTTGTG 875
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 TGGATTTATTTACGGGATACTTTTATGGGGTTGTCATACTTGTATGGTAAAAAATTTGTG 837
Query 876 GCTCCCCCAACACCTCTCATTCTCCAGCTCCGAGAAGAGCTTTATCCGGAGCCTTATGCA 935
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 GCTGCCTCAACACCTCTCATTCTCAAGCTCCGAGAAGAGCTTTATCCGGAGCCTTATGCA 897
Query 936 AAAATCAATTGGACGCAAACACGAAACCGATGTGGAAAGGAAGATCTCTACTATCCACGC 995
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 898 AAAATCAATTGGACGCAAACACGAAACCGATGTGCAAAGGAAGATCTCTACTATCCACGC 957
Query 996 TCATTTTTACAAGATTTGTTTTGGAAGAGTGTTCACATGTTCTCAGAGAGTATCCTAGAT 1055
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 958 TCATTTTTACAAGATTTGTTTTGGAAAAGTGTTCACATGTTCTCGGAGAGTATCCTAGAT 1017
Query 1056 CGATGGCCTTTAAACAAGCTAATAAGACAAAGAGCTCTTCAATCCACTATGGCACTCATT 1115
||||||||||||||||| ||||||||| | |||||||||| |||||||||| ||||||||
Sbjct 1018 CGATGGCCTTTAAACAAACTAATAAGAGAGAGAGCTCTTCGATCCACTATGTCACTCATT 1077
Query 1116 CACTATCATGACGAATCCACCAGATATATTACAGGCGGATGCCTGCCAAAGGCCTTTCAT 1175
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CACTATCATGATGAATCCACCAGATATATTACAGGCGGATGCCTGCCAAAGGCCTTTCAT 1137
Query 1176 ATGCTTGCATGTTGGATAGAAGACCCTAAGAGTGATTATTTTAAAAAACATCTTGCTCGA 1235
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1138 ATGCTTGCATGTTGGATAGAAGACCCTGAGAGTGATTATTTTAAAAAACATCTTGCTCGA 1197
Query 1236 GTTCGCGAATACATATGGATTGGCGAGGATGGCCTGAAAATTCAATCTTTTGGTAGCCAA 1295
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1198 GTTCGCGAATACATATGGATTGGCGAGGATGGCCTGAAAATTCAGTCTTTTGGTAGCCAA 1257
Query 1296 TTATGGGATACAGCCTTATCGCTACATG-CATTACTAGACGGAATTGATGATCATGATGT 1354
|||||||||||| ||||||||||||||| | || ||||||| |||||||| ||||||||
Sbjct 1258 TTATGGGATACATCCTTATCGCTACATGTC-TTGTTAGACGGTATTGATGAGCATGATGT 1316
Query 1355 TGATGATGAGATTAAAACAACGCTCGTTAAAGGATATGATTACTTGAAGAAATCACAAAT 1414
|||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 TGATGA-GA--TTAGAACAACGCTCGTTAAAGGATATGATTACTTGAAGAAATCTCAAAT 1373
Query 1415 TACAGAGAACCCTCGCGGTGATCACTTCAAAATGTTTCGTCACAAGACAAAAGGTGGATG 1474
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1374 TACAGAGAACCCTCGCGGTGATCACTTCCAAATGTTTCGTCACATTACAAAAGGTGGATG 1433
Query 1475 GACATTTTCAGATCAAGATCAAGGATGGCCTGTTTCAGATTGTACTGCTGAAAGCTTAGA 1534
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1434 GACGTTTTCAGATCAAGATCAAGGATGGCCTGTTTCAGATTGTACTGCTGAAAGTTTAGA 1493
Query 1535 GTGTTGTCTATTCTTCGAGAGCATGCCGTCCGAGCTTATTGGaaaaaaaaTGGATGTGGA 1594
|||||||||||||||||||||| |||| || ||||| || || ||||||||||||||||
Sbjct 1494 GTGTTGTCTATTCTTCGAGAGCTTGCCATCAGAGCTAATCGGGAAAAAAATGGATGTGGG 1553
Query 1595 GAAACTCTATGATGCCGTTGATTATCTTCTCTATCTGCAGAGTGATAATGGAGGCATAGC 1654
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GAAACTGTATGATGCTGTTGATTATCTTCTCTATCTGCAGAGTGATAATGGAGGCATAGC 1613
Query 1655 AGCATGGCAACCAGTTGAAGGAAAAGCCTGGTTAGAGTGGCTTAGTCCAGTGGAGTTCCT 1714
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1614 AGCATGGCAACCGGTTGATGGGAAAGCCTGGTTAGAGTGGCTTAGTCCAGTGGAGTTTCT 1673
Query 1715 TGAAGACACAATCGTGGAGTATGAGTATGTAGAATGTACGGGGTCAGCGATTG-CAGCAT 1773
||||||| | | || ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1674 TGAAGACGCGGTGGTCGAGTATGAGTATGTAGAATGTACGGGGTCAGCGATTGTC-GCGT 1732
Query 1774 TGACTCAGTTTAAC-AAACAGTTTCCAGGGTATAAAAACGTAGAGGTTAAACGGTTTATA 1832
|| || |||||| | ||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1733 TGGCTAAGTTTA-CTAAACAGTTTCCAGAGTATAAAAACGCAGAGGTTAAACAGTTTATA 1791
Query 1833 ACAAAGGCTGCAAAGTACATTGAAGACATGCAAACGGTGGATGGTTCATGGTACGGAAAT 1892
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 ACAAAGGGTGCAAAGTACATTGAAGACATGCAAACGGTGGATGGTTCATGGTACGGAAAT 1851
Query 1893 TGGGGAGTGTGTTTTATATACGGGACCTTCTTTGCGGTAAGAGGTCTTGTGGCCGCTGGG 1952
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1852 TGGGGAGTGTGTTTTATATATGGGACCTTCTTTGCGGTAAGAGGTCTTGTGGCTGCTGGG 1911
Query 1953 AAGACTTACAGTAACTGTGAAGCAATTCGTAAAGCAGTTCGTTTTCTTCTAGACACACAA 2012
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1912 AAGACTTACGGTAACTGTGAAGCAATTCGTAAAGCAGTTCGTTTTCTTCTCGACACACAA 1971
Query 2013 AATCCGGAGGGTGGCTGGGGAGAGAGCTTTCTCTCTTGTCCAAGCAAGAAATATACTCCT 2072
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1972 AATCTGGAGGGTGGATGGGGAGAGAGCTTTCTCTCTTGTCCAAGCAAGATATACACTCCT 2031
Query 2073 TTGAAAGGAAACAGCACAAATGTGGTGCAAACAGCACAAGCACTTATGGTGCTAATTATG 2132
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2032 TTGAAAGGAAACAGCACAAATGTGGTGCAAACAGGACAAGCACTTATAGTGCTAATTATG 2091
Query 2133 GGTGATCAGATGGAGAGAGATCCTTTACCGGTTCATCGTGCTGCTCAA-GTGTTGATCAA 2191
| |||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 2092 GCTGATCAAATGGAGAGAGATCCTTTACCGGTTCATCGCGCTGC-CAAAGTGTTGATCAA 2150
Query 2192 TTCACAGTTGGATAATGGCGATTTTCCACAGCAGGAAATAATGGGAACGTTCATGAGAAC 2251
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2151 TTCACAGTTGGATAATGGCGATTTTCCACAACAGGAAATAATGGGAACGTTCATGAGAAC 2210
Query 2252 TGTGATGCTCCATTTTCCGACCTATAGGAACACGTTCTCTCTTTGGGCTCTCACACATTA 2311
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 TGTGATGCTCCATTTTCCAACCTATAGGAACACGTTCTCTCTTTGGGCTCTCACACATTA 2270
Query 2312 CACACATGCTCTGCGACGTCTCCTCCCTTAA 2342
|||||| ||||||||||| || |||||||||
Sbjct 2271 CACACAGGCTCTGCGACGGCTTCTCCCTTAA 2301
> Ahg493357 jgi|Araly1|493357|fgenesh2_kg.7__2790__AT4G15370.1
Length=2274
Score = 2396 bits (1297), Expect = 0.0
Identities = 1996/2322 (86%), Gaps = 93/2322 (4%)
Strand=Plus/Plus
Query 42 ATGTGGAGGCTGAGAACTGGACCGAAGGCTGGAGAGGATACTCACCTGTTCACCACCAAC 101
|||||||| ||||||| ||| | ||||| |||| |||||||| |||||||||||||
Sbjct 1 ATGTGGAGACTGAGAATTGGTGCTAAGGCCAGAGACGATACTCATTTGTTCACCACCAAT 60
Query 102 AACTATGCAGGGAGGCAGATTTGGGAATTTGATGCCAACGCAGGCTCTCCAC-AAGAAAT 160
||||| | ||||||||||||||||| ||||||||| ||| ||||||||| | | ||| |
Sbjct 61 AACTACGTTGGGAGGCAGATTTGGGAGTTTGATGCCGACGTAGGCTCTCC-CGAGGAACT 119
Query 161 TGCCGAGGTAGAGGATGCTCGGCACAAATTCT-CAGACAACACGTCACGTTTCAAGACTA 219
| ||||||| ||||| ||||| | || |||| || |||||| ||| ||||||||| |||
Sbjct 120 TTCCGAGGTCGAGGAGGCTCGTCGGAATTTCTCCA-ACAACAGGTCGCGTTTCAAGGCTA 178
Query 220 CTGCCGATC-TCTTATGGCGCATGCAGTTTCTTAGGGAGAAGAAATTCGAACAGAAGATT 278
||| |||| || ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 179 GTGCTGATCTTC-TATGGCGGATGCAGTTTCTTAGGGAGAAGAAGTTCGAACAGAAGATT 237
Query 279 CCACGAGTGATAATCGAGGATGCA-AGAAAGATAAAGTACGAAGATGCAAAGACAGCATT 337
|| |||||| | | ||||||||| ||||| |||| ||| |||||||||||||| |||||
Sbjct 238 CCTGGAGTGAGAGTAGAGGATGCAGAGAAA-ATAACGTATGAAGATGCAAAGACTGCATT 296
Query 338 GAA-AAGAGGGTTACTCTATTTCACAGCCTTGCAGGCTGATGATGGACACTGGCCAGCTG 396
|| |||||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 297 -AAGAAGAGGATTACTCTATTTCACGGCCTTGCAAGCTGATGATGGACATTGGCCTGCTG 355
Query 397 AAAACT-CTGG-CCCA-AAT-TTCTATACCCCTCCTTTTTTGATATG-CTTGTACATCAC 451
|||| | |||| ||| | | ||| || ||||| ||| || ||||| ||| ||||||||
Sbjct 356 AAAA-TGCTGGTTCCATATTCTTCAATGCCCCT--TTTGTT-ATATGTCTT-TACATCAC 410
Query 452 TGGACATCTGGAGAAAATCTTCACTCCCGAGCAT-GTTAAAGAGTTACTACGTCACATCT 510
||||||||| |||||||||||||||| ||||||| | || ||||||||| ||| |||| |
Sbjct 411 TGGACATCTTGAGAAAATCTTCACTCACGAGCATCG-TATAGAGTTACTTCGTTACATGT 469
Query 511 ACAA-CATGCAGAACGAAGATGGTGGGTGGGGTTTACACGTAGAAAGCCACAGTGTTATG 569
|||| ||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 470 ACAACCAT-CAGAACGAAGATGGTGGGTGGGGATTACACGTAGAAAGCCCCAGCAATATG 528
Query 570 TTCTGTACAGTCATTAATTACGTCTGTCTACGAAT-TGTGGGAGAAGAAGTC-GGTCATG 627
||||| ||||||||||| ||||| ||| | || || | |||||| ||||| | |||||||
Sbjct 529 TTCTGCACAGTCATTAACTACGTATGTTTGCGGATCT-TGGGAGTAGAAG-CTGGTCATG 586
Query 628 ATGATCAAAGAAATGGTTGTGCAAAGGCTCATAAGTGGATCATGGACCATGGTGGTGCTA 687
|||| ||| ||| | |||||||| ||||| |||||||||| | ||||||||||||||||
Sbjct 587 ATGACCAAGGAAGCGCTTGTGCAAGGGCTCGTAAGTGGATCCTCGACCATGGTGGTGCTA 646
Query 688 CCTACACGCCCTTGATCGGAAAAGCGTT-GCTTTCGGTTCTTGGAGTGTATGATTGGTCT 746
||||| ||||||| || |||||| | || |||||||||||||||||||||||||||||||
Sbjct 647 CCTACTCGCCCTTAATAGGAAAAAC-TTGGCTTTCGGTTCTTGGAGTGTATGATTGGTCT 705
Query 747 GGCTGCAATCCTATACCTCCAGAGTTCTGGTTGCTTCCGTCTTCTTTTCCTGTTAATGGA 806
|||||||| |||||||| || ||||||||||| ||||| |||| ||| ||||||||||||
Sbjct 706 GGCTGCAAACCTATACCCCCTGAGTTCTGGTTCCTTCCTTCTTGTTTCCCTGTTAATGGA 765
Query 807 GGGACTCTCTGGATTTATTTACGGGATACTTTCATGGGGTTGTCATACTTGTATGGTAAA 866
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 766 GGGACTCTCTGGATTTATTTACGGGATATTTTTATGGGGTTGTCATACTTGTATGGTAAA 825
Query 867 AAATTTGTGGCTCCCCCAACACCTCTCATTCTCCAGCTCCGAGAAGAGCTTTATCCGGAG 926
|| ||||| ||| || ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 826 AAGTTTGTTGCTACCTCAACACCTCTCATTCTCCAGCTCCGAGAAGAAATTTATCCCGAG 885
Query 927 CCTTATGCAAAAATCAATTGGACGCAAACACGAAACCGATGTGGAAAGGAAGATCTCTAC 986
||||| |||||||| |||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 886 CCTTACACAAAAATCGATTGGAAGCAAGCACGAAACCGATGTGCAAAGGAAGATCTCTAC 945
Query 987 TATCCACGCTCATTTTTACAAGATTTGTTTTGGAAGAG-TGTTCACATGTTCTCAGAGAG 1045
||||||| ||||||||||||||||| |||||||| || ||||||||| |||||||| |
Sbjct 946 TATCCACAATCATTTTTACAAGATTTATTTTGGAA-AGGTGTTCACATATTCTCAGAAAA 1004
Query 1046 TATCCTAGATCGATGGCCTTTAAACAAG-CTAATAAGACAAAGAGCTCTTC-AATCCACT 1103
||||||| ||||||||||||| ||||| | | |||||||||||||||||| || | |||
Sbjct 1005 TATCCTAAATCGATGGCCTTTCAACAATACCA-TAAGACAAAGAGCTCTTCGAA-CTACT 1062
Query 1104 ATGGCA-CTCATTCACTATCATGACGAATCCACCAGATATATTACAGGCGGATGCC-TGC 1161
|||| | ||| ||||||||||||| ||| |||||||||| ||||||||||||| | |||
Sbjct 1063 ATGG-ATCTCGTTCACTATCATGATGAAGCCACCAGATACATTACAGGCGGAT-CTGTGC 1120
Query 1162 CAAAGGCCTTTCATATGCTTGCATGTTGGATAGAAGACCCTA-AGAGTGATTATTTTAAA 1220
| ||||||||||||||||||||||||||| |||||||||| | | ||||| ||||||||
Sbjct 1121 CGAAGGCCTTTCATATGCTTGCATGTTGGGTAGAAGACCC-AGATAGTGACTATTTTAAG 1179
Query 1221 AAACATCTTGCTCGAGTTCGC-GAATACATATGGATTGGCGAGGATGGCCTGAAAATTCA 1279
||||||||||||||||| | | || | ||||||||||||||||||||| || ||||||||
Sbjct 1180 AAACATCTTGCTCGAGTCC-CTGATTTCATATGGATTGGCGAGGATGGTCTTAAAATTCA 1238
Query 1280 ATCTTTTGGTAGCCAATTATGGGATACAGCCTTATCGCTACATG-CATTACTAGACGGAA 1338
|||||||| ||||| || |||||||||||||| |||||||||| | ||| |||||||
Sbjct 1239 GTCTTTTGGAAGCCAGTTGTGGGATACAGCCTTGTCGCTACATGTCCTTA-TAGACGGT- 1296
Query 1339 TT-GATGATCATGATGTTGATGATGAGATTAAAACAACGCTCGTTAAAGGATATGATTAC 1397
|| |||||| ||||||||||| || |||| ||||||| |||||||||| || ||
Sbjct 1297 TTCGATGAT---GATGTTGATGACGAAATTAGGTTAACGCTCTTTAAAGGATACGAGTAT 1353
Query 1398 TTGAAGAAATCACAAATTACAGAGAACCCTCGC-GGTGATCACTTCAAAATGTTTCGTCA 1456
|||||| |||| ||| ||||||||||||||| | || |||||| | |||||||| |||||
Sbjct 1354 TTGAAGGAATCTCAAGTTACAGAGAACCCTC-CTGGCGATCACATGAAAATGTTCCGTCA 1412
Query 1457 CAAGACAAAAGGTGGATGGACATTTTCAGATCAAGATCAAGGATGGCCTGTTTCAGATTG 1516
|| | | |||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1413 CATGGCGAAAGGTGGATGGACATTTTCGGACCAAGATCAAGGATGGCCAGTTTCAGATTG 1472
Query 1517 TACTGCTGAAAGCTTAGAGTGTTGTCTATTCTTCGAGAGCATGCCGTCCGAGCTTATTGG 1576
||||||||| || |||||||| ||||||||||||||||||||||| || ||| |||||||
Sbjct 1473 TACTGCTGAGAGTTTAGAGTGCTGTCTATTCTTCGAGAGCATGCCATCAGAGTTTATTGG 1532
Query 1577 aaaaaaaaTGGATGTGGAGAAACTCTATGATGCCGTTGATTATC-TTCTCTATCTGCAGA 1635
|||||||||| |||||||||||||||||| |||||||||| || |||||||| ||||||
Sbjct 1533 CAAAAAAATGGCTGTGGAGAAACTCTATGAAGCCGTTGATT-TCCTTCTCTATTTGCAGA 1591
Query 1636 GTGATAATGGAGGCATAGCAGCATGGCAACCAGTTGAAGG-AAAAGCCTGGTTAGAGTGG 1694
||||||||||||| ||| | ||||||||||||| || || |||| | |||| |||||||
Sbjct 1592 GTGATAATGGAGGTATAACGGCATGGCAACCAGCGGATGGGAAAA-CTTGGTAAGAGTGG 1650
Query 1695 CTTAGTCCAGTGGAGTTCCTTGAAGACACAATCGTGGAGTATGAGTATGTAGAATGTACG 1754
||||||||||||||||| | |||||| | | || ||| ||||||||||||||||||||
Sbjct 1651 CTTAGTCCAGTGGAGTTTATGGAAGACGCGGTTGTCGAGCATGAGTATGTAGAATGTACG 1710
Query 1755 GGGTCAGCGATTGCAGCATTGACTCAGTTTAACAAACAGTTTCCAGGGTATAAAAACGTA 1814
|||||||| |||||||||||| || |||| || |||||||||||||| || ||||| | |
Sbjct 1711 GGGTCAGCAATTGCAGCATTGGCTAAGTTCAATAAACAGTTTCCAGGATACAAAAAGGAA 1770
Query 1815 GAGGTTAAACGGTTTATAACAAAGGCTGCAAAGTACATTGAAGACATGCAAACGGTGGAT 1874
|||||| ||||||||||||| |||| | ||||||||||| ||| | |||| |||||||
Sbjct 1771 GAGGTTGAACGGTTTATAACCAAGGGGGTGAAGTACATTGAGGACTTTCAAATGGTGGAT 1830
Query 1875 GGTTCATGGTACGGAAATTGGGGAGTGTGTTTTATATACGGGACCTTCTTTGCGGTAAGA 1934
|||||||||||||||||||||||||||||||| || || || ||||||||||||||||||
Sbjct 1831 GGTTCATGGTACGGAAATTGGGGAGTGTGTTTCATGTATGGAACCTTCTTTGCGGTAAGA 1890
Query 1935 GGTCTTGTGGCCGCTGGGAAGAC-TTACAGTAACTGTGAAGCAATTCGTAAAGCAGTTCG 1993
||||||||||| || |||||| | ||||| ||||||||| |||||||||| |||||||||
Sbjct 1891 GGTCTTGTGGCTGCAGGGAAG-CGTTACAATAACTGTGAGGCAATTCGTAGAGCAGTTCG 1949
Query 1994 TTTTC-TTCTAGACACACAAAATCC-GGAGGGTGGCTGGGGAGAGAGCTTTCTCTCTTGT 2051
||| | |||||||||||||||| || |||||||||||||||||| |||| ||||||||||
Sbjct 1950 TTT-CATTCTAGACACACAAAA-CCTGGAGGGTGGCTGGGGAGAAAGCTATCTCTCTTGT 2007
Query 2052 CCAAGCAAGAAATATACTCCTTTGAAAGGAAACA-GCACAAATGTGGTGCAA-ACAGCAC 2109
|||| |||||||||||||||||||| |||||||| | |||||||||||| || |||| ||
Sbjct 2008 CCAACCAAGAAATATACTCCTTTGATAGGAAACAAG-ACAAATGTGGTG-AATACAGGAC 2065
Query 2110 AAGCACTTATGGTGCTAATTATGGGTGATCAGATGGAGAGAGATCCTTTACCGGTTCATC 2169
||||||||||||| |||||| | ||||||| ||||||||||||||||| ||||||||||
Sbjct 2066 AAGCACTTATGGTTCTAATTGCGAGTGATCAAATGGAGAGAGATCCTTTGCCGGTTCATC 2125
Query 2170 GTGCTGCTCAA-GTGTTGATCAATTCACAGTTGGATAATGGCGATTTTCCACAGCAGGAA 2228
| ||||| ||| |||||||| |||||||||||||||||||| | | |
Sbjct 2126 GCGCTGC-CAAAGTGTTGATTAATTCACAGTTGGATAATGG--A------A-A------- 2168
Query 2229 ATAATGGGAACGTT-CATGA-GAACTGTGATGCTCCATTTTCCGACCTATAGGAACACGT 2286
|||||||| ||| || || ||| |||||||||||||||||| ||||||||||||| ||
Sbjct 2169 -TAATGGGA--GTTTCAAGATGAA-TGTGATGCTCCATTTTCCTACCTATAGGAACATGT 2224
Query 2287 TCTCTCTTTGGGCTCTCACACATTACACACATG-CTCTGCGA 2327
|| ||||||||||||||||||||||||| || | ||||||||
Sbjct 2225 TCACTCTTTGGGCTCTCACACATTACAC-CAAGGCTCTGCGA 2265
> Ahg316749 jgi|Araly1|316749|fgenesh1_pm.C_scaffold_2001782
Length=2256
Score = 1378 bits (746), Expect = 0.0
Identities = 1844/2351 (78%), Gaps = 168/2351 (7%)
Strand=Plus/Plus
Query 42 ATGTGGAGGCTGAGAACTGGA-CCGAAGGCTGGAGAGGATACTCACCTGTTCACCACCAA 100
|||||||| || |||| || | | ||| |||||||| | | |||| ||||||| |||||
Sbjct 1 ATGTGGAGACTAAGAATTGCAGCTGAA-GCTGGAGACAAGAATCACTTGTTCACAACCAA 59
Query 101 CAACTATGCAGGGAGGCAGATTTGGGAATTTGATGCCAACGCAGGCTCTCCACAAGAAAT 160
|| ||||| || || |||||||||||||||||||| || |||||||| || || |||
Sbjct 60 CAGTTATGCCGGTAGACAGATTTGGGAATTTGATGCTAAGGCAGGCTCGCC-TGAGGAAT 118
Query 161 T-GCCGAGGT-AGAGGATGCTCGGCACAAATTCTC-AGACAA-CACGTCACGTTTCAAGA 216
| || || || | | | | ||| || || ||||| || ||| | || | |||||||||
Sbjct 119 TAGCTGAAGTCA-ATAAGGTTCGACAGAAGTTCTCAAG-CAATC-CGCCTCGTTTCAAGT 175
Query 217 CTACTGCCGATCT-CTTATGGCGCATGCAGTTTCTTAGGGAGAAGAAATTCGAACAGAAG 275
||| ||| ||||| ||| ||||||||||||||||| |||||||||| || || ||||||
Sbjct 176 CTAGTGCTGATCTACTT-TGGCGCATGCAGTTTCTAAGGGAGAAGAGTTTTGAGCAGAAG 234
Query 276 ATTCCACGAGTGATAATCGAGGATGCAAGA-AAGATAA-AGTACGAAGATGCAAAGACAG 333
||||| ||||||||||| || |||| || | ||||||| | || ||||| || |||| |
Sbjct 235 ATTCCGCGAGTGATAATAGATGATG-AACAGAAGATAACA-TATGAAGACGCCAAGATGG 292
Query 334 CA-TTGAAAAGAGGGTTACTCTATTTCACAGCCTTGCAGGCTGATGATGGACACTGGCCA 392
|| || ||||||||| |||||||||| | |||||||| || |||||||||||||||||
Sbjct 293 CACTT-AAAAGAGGGATACTCTATTTTGCGGCCTTGCAAGCCGATGATGGACACTGGCCT 351
Query 393 GCTGAAAACTCTGG--CCCAAAT-TTCTATACCCCTCCTTTTTTGATATGCTTGTACATC 449
|||||||| ||||| ||| | ||| | | |||| ||| | ||| ||||||| |||
Sbjct 352 GCTGAAAATTCTGGTCCCCTGTTCTTCGA-A--GCTCCCTTTGTCATAAGCTTGTATATC 408
Query 450 ACTGGACATCTGGAGAAAATCTTCACTCCCGAGCAT-GTTAAAGAG-TTACTACGTCACA 507
||||| |||||||| ||||||||| ||| |||||| | |||||| | | | ||| |||
Sbjct 409 ACTGGGCATCTGGATAAAATCTTCTCTCAAGAGCATCG-CAAAGAGCTGA-TGCGTTACA 466
Query 508 TCTACAA-CATGCAGAACGAAGATGGTGGGTGGGGTTTACACGTAGAAAGCCACAGTGTT 566
| ||||| ||| |||||||| |||||||| ||||| ||||| || ||| |||||||||||
Sbjct 467 TGTACAACCAT-CAGAACGATGATGGTGGATGGGGATTACATGTGGAAGGCCACAGTGTT 525
Query 567 AT-GTTCTGTACAGTCATTAATTACGTCTGTCTACGAA-TTGTGGGAGAAGAAGTCGGTC 624
| ||||||||| || || || ||| | |||||| ||| || ||||| || || | |
Sbjct 526 -TGGTTCTGTACGGTTATCAACTACATATGTCTAAGAATTTTTGGGA-TAG-AG-C---C 578
Query 625 ATGATGATCAAAG-AAATGGTTGTGCAAAGGCTC-ATAAGTGGATCATGGACCATGGTGG 682
||| | ||| ||||| |||||||| ||||| | ||||||||| | ||||| |||||
Sbjct 579 ----TGA-CCAAGAAAATGTTTGTGCAAGGGCTCGA-AAGTGGATCCTCGACCACGGTGG 632
Query 683 TGCTACCTACACGCCCTTGATCGGAAAAGCGTT-GCTTTCGGTTCTTGGAGTGTATGATT 741
|||||| || || || |||||||| |||| || ||||||||||||||||||||||||||
Sbjct 633 TGCTACTTATACACCTTTGATCGG-AAAGATTTGGCTTTCGGTTCTTGGAGTGTATGATT 691
Query 742 GGTCTGGCTGCAATCCTATACCTCCAGAGTTCTGGTTGCTTCCGTCTTCTTTTCCTGTTA 801
||||||| ||||| || ||||| || ||||| ||| |||| || ||||||| |||||| |
Sbjct 692 GGTCTGGTTGCAAACCCATACCACCGGAGTTTTGGATGCTCCCTTCTTCTTCTCCTGTCA 751
Query 802 ATGGAGGGACTCTCTGGATTTATTTACGGGATACTTTCATGGG-GTTGTCATACTTGTAT 860
||||||| ||||| ||||||||||| ||||| | ||| |||| || |||||||||||||
Sbjct 752 ATGGAGGCACTCTATGGATTTATTTCCGGGACATTTTTATGGCTGT-GTCATACTTGTAT 810
Query 861 GGTAAAAAATTTGTGGCTCCCCCAACACCTCTCATT-CTCCAGCTCCGAGAAGAGCTTTA 919
|| ||||||||||| || |||||||||| ||| | | ||||||| |||||||||||
Sbjct 811 GGCAAAAAATTTGTCACTAAAACAACACCTCTAATTGCAC-AGCTCCGGGAAGAGCTTTA 869
Query 920 TCCGGAGCCTTAT-GCAAAAATCAATTGGACGCAAA-CACGA-AACCGATGTGGAAAGGA 976
||| ||| |||| |||||| | | ||||| || || | || ||| ||| | ||||||
Sbjct 870 TCCTCAGCGTTATAGCAAAATTGA-TTGGA-GCCAAGCTCGCCAACA-ATGCGCAAAGGA 926
Query 977 AGATCTCTACTATCCACGCTCATTTTTACAAGATTTGTTTTGGAAGAG-TGTTCACATGT 1035
|||||| |||||||||| |||||| ||||| | |||||||||| ||| |||||| ||||
Sbjct 927 AGATCTATACTATCCACAATCATTTGTACAAAACTTGTTTTGGA-GAGGTGTTCATATGT 985
Query 1036 TCTCAGAGAGTATCCTAGA-TC-GATGGCCTTTAAACAAGCTAATAAGACAAAGAGCTCT 1093
| ||||||| | || | || || | |||||||| ||||| || |||||||||||||| ||
Sbjct 986 TGTCAGAGAATGTCTT-GAATCAG-TGGCCTTTCAACAAACTCATAAGACAAAGAGCGCT 1043
Query 1094 TC--AATCCACTATGGCACTCATTCACTATCATGACGAA-TCCACCAGATATATTACAGG 1150
| || || |||| |||||||||||| ||| ||||| || |||||||| ||||| ||
Sbjct 1044 CCGGAAAACA--ATGGAACTCATTCACTACCATAACGAAGTC-ACCAGATACATTACTGG 1100
Query 1151 CGGATGCCTGCCAAAGGCC-TTTCATATGCTTGCATGTTGGATAGAAGACCCTA-AGAGT 1208
||||| ||| ||| || |||||||||||||| ||||||||||||||||| | |||||
Sbjct 1101 TGGATGTGTGCAAAAT-CCATTTCATATGCTTGCTTGTTGGATAGAAGACCC-AGAGAGT 1158
Query 1209 GATTATTTTAAAAAACATCTTGCTCGAGTTCGC-GAATACATATGGATTGGCGAGGATGG 1267
||||| ||||| || ||||| || |||| ||| || |||||||||||||| ||||||||
Sbjct 1159 GATTACTTTAAGAAGCATCTCACTAGAGT-CGCAGATTACATATGGATTGGAGAGGATGG 1217
Query 1268 CCTGAAAATTCAATCTTTTGGTAGCCAATTATGGGATACAGCCTTATCGCTACATG-CAT 1326
|| ||||| || || ||||||||||| || |||||||| ||| |||| || || | |||
Sbjct 1218 TCTAAAAATCCAGTCGTTTGGTAGCCAGTTGTGGGATACGGCCCTATCACTCCAAGTCAT 1277
Query 1327 -TACTAGACGGAATTGATGATCATGATGTTGATGATGAG-ATTAAAACAACGCTCGTTAA 1384
| ||| | ||||| | || || |||||| ||| |||||| ||||| | || ||
Sbjct 1278 GT--TAGGTGCTGCTGATGTT-AT--TGATGATGA-GAGTATTAAAGCAACGTTGGTCAA 1331
Query 1385 AGGATATGA-TTACTTGAAGAAATCACAAATTACAGAGAACCCTCGCGGTGATCACT-TC 1442
||||| | || |||| |||| || || || ||| |||| |||| |||||| || | |
Sbjct 1332 GGGATACAAATT-CTTGGAGAATTCTCAGATAACACAGAATCCTCCCGGTGACCA-TATG 1389
Query 1443 AAAATGTTTCGTCACAAGACAAAAGGTGGATGGACATTTTCAGATCAAGATCAAGGATGG 1502
|||||||| || |||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1390 AAAATGTTCCGACACATTACAAAAGGTGGATGGACTTTTTCAGACCAAGATCAAGGATGG 1449
Query 1503 CCTGTTTCAGATTGTACTGCTGAAAGCTTAGAGTGTTGTCTATTCTTCGAGAGC-ATGCC 1561
|||||||| ||||| |||||||| || ||||||||||| ||| |||| || ||| | |||
Sbjct 1450 CCTGTTTCTGATTGCACTGCTGAGAGTTTAGAGTGTTGCCTAATCTTTGAAAGCCA-GCC 1508
Query 1562 GTCCGAGCTTATTGGaaaaaaaaTGGATGTGGAGAAACTCTATGATGCCGTTGATTATCT 1621
|| ||| | ||||| | ||||||||||| ||| ||| ||||| | | ||
Sbjct 1509 GTTTGAGATCATTGGTGAGAAAATGGATGTCAAGAGACTTTATGA--C-G--------CT 1557
Query 1622 TCTCTATCTGCAGAGTGATAATGGAGGCATAGCAGCATGGCAACCAG---TTGAAGGAAA 1678
| ||| || | | |||||| ||| | || ||| | |||| ||| |||||
Sbjct 1558 -----A---GCA-AG--A-A-TGGAGGTATATCGGCGTGGGAGCCAGCCCTTG--GGAAA 1602
Query 1679 AGCCTGGTTAGAGTGGCTTAGTCCAGTGGAGTTCCTTGAAGACACAATCGTGGAGTATGA 1738
| ||||| |||||||||| ||||||||||||||| | ||| |||||||||||||| | ||
Sbjct 1603 A-CCTGGCTAGAGTGGCTCAGTCCAGTGGAGTTCATGGAAAACACAATCGTGGAGCACGA 1661
Query 1739 GTATGTAGAATGTACGGGGTCAGCGATTGCAGCATTGACTCAGTTT-AA-CAAACAGTTT 1796
|||||||||||| || || |||| ||| ||||||| |||| || || ||| ||||||
Sbjct 1662 GTATGTAGAATGCACAGGATCAGTGATAATAGCATTGG-TCAGGTTCAAGCAA-CAGTTT 1719
Query 1797 CCAGGGT-ATAAAA-ACGTAGAGGTT-AAACGGTTTATAACAAAGGC--TGCAAAGTACA 1851
|||| | | | | | | ||||||| ||| |||||||| ||||| || ||| ||||
Sbjct 1720 CCAGC-TCACAGAGCA-GAAGAGGTTGAAA-GGTTTATAGTAAAGGGAGTG-AAA-TACA 1774
Query 1852 TTGAAGACATGCAAAC-GGTGGATGGTTCATGGTACGGAAATTGGGGAGTGTGTTTTATA 1910
| || ||| | ||| | |||||||||||||||||| || || |||||||||||||| ||
Sbjct 1775 TAGAGGACTTACAA-CTGGTGGATGGTTCATGGTATGGCAACTGGGGAGTGTGTTTCATG 1833
Query 1911 TACGGGA-CCTTCTTTGCGGTAAGAGGTCTTGTGGCCGCTGGGAAGACTTACAGTAACTG 1969
|| || | |||| ||||| |||||||||| ||||| || || |||||||| ||||||||
Sbjct 1834 TATGG-ATCCTTTTTTGCTATAAGAGGTCTAGTGGCTGCAGGAAAGACTTATAGTAACTG 1892
Query 1970 TGAAG-CAATTCGTAAAGCAGTTC-GTTTTCTTCT-AGACACACAAAATCCG--GAGGGT 2024
||| | ||||||| |||||||| ||| | |||| | |||||||||| | | || ||
Sbjct 1893 C-AAGGCGATTCGTAGAGCAGTTCAGTTCT-TTCTCA-ACACACAAAA-C-GTTGAAGGC 1947
Query 2025 GGCTGGGGAGAGAGCTTTCTCTCTTGTCC-AAGCAAGAAATATACTCCTTT-GAAAGGAA 2082
|| ||||||||||| ||||||||||| || || ||||||||||| |||| | ||| ||||
Sbjct 1948 GGTTGGGGAGAGAGTTTTCTCTCTTGCCCCAA-CAAGAAATATATTCCTCTAGAA-GGAA 2005
Query 2083 ACA-GCACAAATGTGGTGCAA-ACAGCACAAGCACTTATGG-TGCTAATTATGGGTGATC 2139
||| | | ||||| ||| || |||| |||||| || |||| | ||||||||||||| ||
Sbjct 2006 ACAAG-AGTAATGTAGTG-AATACAGGACAAGCTCTAATGGGT-CTAATTATGGGTGGTC 2062
Query 2140 AGATGGAGAGAGATCCTTTACCGGTTCATCGTGCTGCTCAA-GTGTTGATCAATTCACAG 2198
|||||||| || | || ||||| ||||| |||||||| ||| ||||||||||||| |||
Sbjct 2063 AGATGGAGCGAAACCCGTTACCAGTTCACCGTGCTGC-CAAAGTGTTGATCAATTTGCAG 2121
Query 2199 TTGGATAATGGCGATTTTCCACA-GCAGGAAATAATG-GGAACGTTCATGA-GAACTGTG 2255
||||||| || |||||||| || | ||||||||| | ||| ||| | || ||| ||||
Sbjct 2122 ATGGATAACGGTGATTTTCCCCAAG-AGGAAATAA-GAGGAGTGTTTAAGATGAA-TGTG 2178
Query 2256 ATGCTCCATTTTCCGACCTATAGGAACACGTTCTCTCTTTGGGCTCTCACACATTACACA 2315
|||| |||| ||| || |||||||||| ||| |||| ||||| |||||| |||| ||
Sbjct 2179 CTGCTACATTATCCAACATATAGGAACATATTCACTCTCTGGGCACTCACATATTATACT 2238
Query 2316 CATGCTCTGCG 2326
|| ||||||||
Sbjct 2239 CAAGCTCTGCG 2249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93968634415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5