BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48020.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949161 jgi|Araly1|949161|scaffold_801048.1 1742 0.0
> Ahg949161 jgi|Araly1|949161|scaffold_801048.1
Length=1111
Score = 1742 bits (943), Expect = 0.0
Identities = 1055/1110 (95%), Gaps = 3/1110 (0%)
Strand=Plus/Plus
Query 147 CTTCCTCTCTTTTGTCGGTAAATGGAGTTACCCGTCGTAGATCTGTCTAGTTACCTCGAC 206
||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||
Sbjct 4 CTTCCTCTCTTTTGTCGGT-AATGGAATTACCCGTCGTAGATCTGTCTCGTTACCTCGAA 62
Query 207 TTCTCCGGTGATGAATTAGGATCCGATCTACTCGAATCATGCCGACAAGTGAGTCGGATC 266
| ||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 63 TCCTCCGGTGATGAATTAGGATCCGATCTTCTCGAATCGTGCCGAGAAGTGAGTCGGATC 122
Query 267 CTAAAAGAAACCGGAGCTC-TCATTGTTAAAGATCCTCGATGTTGCGCTCAAGACAACGA 325
||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||||
Sbjct 123 CTAAAAGAAACCGGAGCTCTTC-TTGTCAAAGATCCTCGATGTAGCGCTCAAGACAACGA 181
Query 326 TCGATTCATTGATATGATGGAAAATTATTTCGAAAAACCTGATGATTTCAAACGATTGCA 385
||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 182 TCGATTCATCGATATGATGGAGACTTATTTCGAAAAACCCGATGATTTCAAACGATTGCA 241
Query 386 ACAAAGACCTAATCTTCACTATCAGGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAG 445
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 242 ACAAAGACCTAATCTTCACTATCAGGTTGGTGCGACGCCGGAGGGAGTGGAAGTTCCGAG 301
Query 446 GAGTTTGGTTGATGAAGAGATGCAAGAAAAGTTCAATACAATGCCTAATGAATACAAACC 505
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 302 AAGTTTGGTTGATGAAGAGATGCAAGAAAAGTTCAAGACAATGCCTGATGAATACAAACC 361
Query 506 ACATATTCCGAAAGGACCAGATCATAAGTGGAGATATATGTGGAGAGTTGGTCCTAGGCC 565
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 ACATATTCCTAAAGGACCAGATCATAAGTGGAGATATATGTGGAGAGTTGGTCCTCGGCC 421
Query 566 ATCTAACACACGGTTTAAGGAGCTTAATTCTGAGCCTGTTGTACCGGAAGGTTTTCCGGG 625
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 422 ATCTAACACACGGTTTAAGGAGCTTAATTCTGAGCCTGTTATACCGGAAGGTTTTCCAGA 481
Query 626 GTGGGAAGAAGTAATGGACTCATGGGGTTACAAGATGATATCCGCGGTTGAGGTTGTTGC 685
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GTGGAAAGAAGTAATGGACTCATGGGGTTACAAGATGATATCCGCGGTTGAGGTTGTTGC 541
Query 686 TGAAATGGCAGCAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCA 745
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGAAATGGCAGCAATCGGTTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCA 601
Query 746 GGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGGAAGGGAC 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 602 GGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGGAGGGGAC 661
Query 806 GATATTTGCAGGATATCACTATGATCTTAATTTTCTAACGATTCATGGAAGAAGTAGATT 865
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 662 GATATTTGCAGGATATCACTATGACCTCAATTTTCTAACGATTCATGGAAGAAGTAGATT 721
Query 866 CCCTGGTCTATATATTTGGTTAAGGAATGGAGAGAAGGTTGCGGTTAAAGTTCCGGTAGG 925
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 722 CCCTGGTCTATATATTTGGTTAAGGAATGGGGAGAAGGTTGCGGTTAAAGTTCCTGTAGG 781
Query 926 CTGTCTCTTGATTCAAGCTGGAAAGCAGATAGAATGGTTAACTGCTGGAGAATGCATTGC 985
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 782 CTGTCTCTTGATTCAAACTGGAAAGCAGATAGAATGGTTGACTGCTGGAGAATGCATTGC 841
Query 986 TGGAATGCATGAAGTGGTTGTTACGAGCAAGACGAAGGATGCCATCACATTAGCAAAGGA 1045
||||||||||||||||||||| ||||||||||| || ||||| |||| ||||||||| ||
Sbjct 842 TGGAATGCATGAAGTGGTTGTCACGAGCAAGACTAAAGATGCAATCAAATTAGCAAAAGA 901
Query 1046 ACAAAACCGAAGCCTATGGAGAGTTTCCTCGACTTTGTTTGCCCACATTGCCTCTGATGC 1105
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 902 ACAAAACCGAAGCCTATGGAGAGTTTCCTCTACTTTGTTTGCCCACATTGCCTCTGATGC 961
Query 1106 GGAGCTGAAACCTTTGGGACATTTCGCAGAATCATCTTTGGCAAGTAAATATCCGGCGAT 1165
|||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||
Sbjct 962 TGAGCTGAAACCTTTGGGACATTTCGCGGAATCATCACTGGCGAGTAACTATCCGGCGAT 1021
Query 1166 ACCCGCAGGAGAGTATGTTGAACAAGAACTCTCGGTCATCAATCTCAAAGGAAATAAGGG 1225
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 1022 ACCCGCAGGAGAGTATGTTGAACAAGAGCTCTCTGTCATCAATCTAAAAGGAAAGAAGGG 1081
Query 1226 ATCTTCATAGTTTCAGTGTTCAGCCGTGAA 1255
|| |||||||||||||||||||||| ||||
Sbjct 1082 ATTTTCATAGTTTCAGTGTTCAGCCATGAA 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5