BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48040.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949163 jgi|Araly1|949163|scaffold_801050.1 1853 0.0
> Ahg949163 jgi|Araly1|949163|scaffold_801050.1
Length=1296
Score = 1853 bits (1003), Expect = 0.0
Identities = 1201/1297 (93%), Gaps = 11/1297 (1%)
Strand=Plus/Plus
Query 133 ATTAGGGTTTCGCTACAATGCACTGGTTGCTACAGAGAAGGGTTAGTTTGTCTACTAGTT 192
||||||||||||||| ||||| |||||||||||| |||| |||| ||||||||||||||
Sbjct 6 ATTAGGGTTTCGCTATAATGCGGTGGTTGCTACAGGGAAGAGTTAATTTGTCTACTAGTT 65
Query 193 TGTGTAAATGCAGAGAAAGGTTTGAttttttttATCAGCAGAGATGTGGTTTAGTTAATG 252
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 66 TGTGTAAATGCAGAGAAAGGTTTGATTTTTTATATCAGCAGAGATGTGGTTTAGTTAACG 125
Query 253 TAAAGTTGAAATGGGTTAAAGATAGAGAACTTGATGCTGTTGTGGTTCGTGAAAAGCATC 312
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 126 TTAAGTTGAAATGGGTTAAAGATAAAGAACTTGATGCTGTTGTGGTTCGTGAAAAGCATC 185
Query 313 TTAGAGCAGTTTGTAATCTCGTTTCTGTTATTTCGGCTTCTCCTGATTTGAGACTACCTA 372
||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 186 TTAAAGCAGTTTGTAATCTCGTTTCAGTTATTTCGGCTTCTCCTGATTTGAAACTACCTA 245
Query 373 TCTTTAAGCTTTTGCCTCACCGTGGTCAGCTTGGTTTGCCTCAAGAGCTTAAGCTTTCAG 432
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 246 TCTTTAAGCTTTTGCCTCACCGTGGTCAGCTCGGTTTGCCTCAAGAGCTTAAGCTTTCGG 305
Query 433 CTTTTATTCGGAGGTATCCCAACATTTTTGTTGAGCATTGTTATTGGGATAGTGCAGGTA 492
| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 306 CGTTTATTCGGAGATATCCCAACATTTTTGTGGAGCATTGTTATTGGGATAATGCAGGTA 365
Query 493 CTAGTGTTCCTTGCTTTGGTTTAAC-TCGTGAGACGATTGATCTTTATTATGAAGAAGTT 551
||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||| |
Sbjct 366 CTAGTGTTCCTTGCTTTGGTTTAACGT-GTGAGGCGATTGATCTTTATTGTGAAGAAGCT 424
Query 552 GATGTTTCACGGGTGAATGAAAGGGATGTTCTTGTGAGGTTGTGTAAACTTCTTATGCTT 611
||||||| |||||| || |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 425 GATGTTTTACGGGTCAACGAAAAGGATGTTATTGTGAGGTTGTGTAAACTTCTTATGCTT 484
Query 612 ACTTGTGAAAGAACACTTTCGCTACATTCTATTGATCATCTTAGATGGGACTTGGGTTTG 671
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 485 ACGTGTGAAAGAACACTTTCGCTACATTCCATTGATCATCTCAGATGGGATTTGGGTTTG 544
Query 672 CCGTATGATTATCGAGATTCGTTGATTACTAAGCATCCGGATTTGTTCAGTTTGGTGAAG 731
|||||||||||| ||||||| |||||| ||||||| |||||||||||| |||||||||||
Sbjct 545 CCGTATGATTATAGAGATTCATTGATTCCTAAGCACCCGGATTTGTTCTGTTTGGTGAAG 604
Query 732 TTGTCTAGTGATCTTGACGGTTTAAAATTAATACATTGGGATGAACACCTCGCTGTTTCG 791
||||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||||||||
Sbjct 605 TTGTCTAGTGATCTTGATGGTTTGAAATTGATATATTGGGATGAACACCTTGCTGTTTCC 664
Query 792 CAAATGCA-ACTGAGAGAGGACGTTGGAAATGATGAACGTAT-GGCTTTCCCGGTTAAAT 849
||| |||| | | | |||||||||||||||| |||| | ||| | |||| ||||||||||
Sbjct 665 CAACTGCAGA-TAAAAGAGGACGTTGGAAATAATGATCATATAGCCTTT-CCGGTTAAAT 722
Query 850 TTACGAGAGGGTTTGGATTGAAGAGGAAGAGTATTGAGTGGCTCCAAGAATGGCAAAGAC 909
||||||| ||||||||| ||||||||||||| || |||||||||||||||||||| ||||
Sbjct 723 TTACGAGGGGGTTTGGACTGAAGAGGAAGAGCATGGAGTGGCTCCAAGAATGGCAGAGAC 782
Query 910 TTCCTTATACATCACCTTATGTCGATGCATCTCATTTGGATCCAAGAACTGATTTATCAG 969
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 783 TCCCTTATACCTCACCTTATGTCGATGCATCTCATTTGGATCCAAGAACTGATTTGTCAG 842
Query 970 AGAAGAGAAATGTTGGAGTGTTTCACGAACTTCTTCATCTAACAATTGGAAAAAAGACAG 1029
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 843 AGAAGAGAAATGTCGGAGTGTTTCACGAACTTCTTCATCTAACAATTGGGAAAAAGACAG 902
Query 1030 AGAGGAAAAACGTTAGCAATCTTCGTAAACCGTTTGCACTTCCGCAGAAGTTCACCAAAG 1089
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AAAGGAAAAACGTTAGCAATCTTCGTAAACCGTTTGCACTTCCGCAGAAGTTCACCAAAG 962
Query 1090 TATTTGAGCGTCACCCTGGTATTTTCTACATTTCTATGAAATGTGATACACAGACAGTGA 1149
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 963 TATTTGAGCGTCACCCGGGTATTTTCTACATTTCTATGAAATGTGATACGCAGACAGTGA 1022
Query 1150 TCCTTAGAGAAGCATATGATAGGCGGCATCTCATCGAAAAGCACCCTCTTGTTGAAGTCA 1209
||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||
Sbjct 1023 TCCTTAGAGAAGCATATGATAGGCGACATCTCATTGAAAAGCACCCTCTCGTTGAAATCA 1082
Query 1210 GGGAAAAGTTCGCAAACATGATGAATGAAGGGTTTCTGGATAGAAGTCGGGGACTGTATC 1269
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1083 GGGAAAAATTCGCAAACATGATGAATGAAGGGTTTCTGGATAGAAGTCGGGGACTATATC 1142
Query 1270 AAAAATCTGTTGAGGCTGATTTGGAGAAGAACAATATCAAGACAAGTTATCCGGTTTGGT 1329
| ||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1143 AGAAATCTGTTGATACTGATTTGGGGAAGAACAATATCAAGACAATTTATCCGGTTTGGT 1202
Query 1330 CAGACGAAGAAGAAGAGTTGGACAATAATTTGATATCTGGATACGACTCTGATTGTCCTG 1389
|||| | |||||||||| ||||||||| || |||| |||||||||||||||||| |
Sbjct 1203 CAGA--A-GAAGAAGAGTCAGACAATAATCCGAAATCTCGATACGACTCTGATTGTCATC 1259
Query 1390 TGGTTGAAGAA-CATAAA-CGGGTGTTTTAGTTGTGA 1424
| ||| ||||| |||||| ||| ||||||||| ||||
Sbjct 1260 TAGTTAAAGAAACATAAAACGGATGTTTTAGTAGTGA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5