BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48060.1
Length=3235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494857 jgi|Araly1|494857|fgenesh2_kg.8__673__AT5G48060.1 5033 0.0
> Ahg494857 jgi|Araly1|494857|fgenesh2_kg.8__673__AT5G48060.1
Length=3228
Score = 5033 bits (2725), Expect = 0.0
Identities = 3070/3236 (95%), Gaps = 25/3236 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAACACCACCAAACTAGTCGTGCACGTGGTTGATGCTCAATATCTTATGCCCAGA 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAACACCACCAAACTGGTCGTGCACGTGGTTGATGCTCAATATCTTATGCCCAGA 60
Query 61 GATGGCCAAGGATCAGCAAGTCCTTTTGTAGAAGTTGATTTCCTTAACCAGTTAAGCAAA 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 GATGGCCAAGGATCAGCAAGTCCTTTTGTAGAAGTCGATTTTCTTAACCAGTTAAGCAAA 120
Query 121 ACAAGAACCGTACCTAAAAGCCTTAACCCTGTTTGGAACCAAAAACTCTACTTTGATTAT 180
|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 121 ACAAGAACCGTACCTAAAAGCCTTAACCCTGTCTGGAACCAGAAACTCTTCTTTGATTAC 180
Query 181 GACCAGAGTGTGATAAACCAGCACAACCAACACATTGAAGTCTCGGTTTACCACGAAAGA 240
|||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GACCAGAGTGTGATAAGCCATCACAACCAACACATTGAAGTCTCTGTTTACCACGAAAGA 240
Query 241 AGACCGATTCCCGGTAGAAGTTTCCTCGGTAGAGTCAAGATTTCTCTCTGTAATATTGTT 300
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 241 AGACCGTTTCCCGGTAGAAGTTTCCTCGGTAGAGTCAAGATTCCTCTCTCTAATATTGTT 300
Query 301 TACAAGGACGACCAAGTGTATCAACGCTTCACGTTGGAGAAGAAATGGCTTCTCTCTTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACAAGGACGACCAAGTGTATCAACGCTTCACGTTGGAGAAGAAATGGCTTCTCTCTTCT 360
Query 361 GTTAAAGGTGAGATTGGTCTCAAATTCTACATTTCATCGTCAGAAGAAGACCAAACATTT 420
|||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| |||
Sbjct 361 GTTAAAGGTGAGATTGGTCTCAAATTCTACATTTCATCATCCGAACAAGAGCAAACCTTT 420
Query 421 CCTC-T--TC--C-TTCTAAACCTTACACCAGCCCAACACAAGCCTCTGCCTCTGGAACT 474
|||| | || | |||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 421 CCTCCTCCTCTTCATTCTAAACCTTACACCAGTCCAACTCAAGCCTCTGCCTCTGGAACT 480
Query 475 GAAGAAGATACTGCTGATTCTGAAACAGAAGATTCTCTAAAGAGTTTTGCATCAGCAGAG 534
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GAAGAAGATACTGCTCATTCTGAAACAGATGATTCTCTAAAGAGTTTTGCATCAGCAGAG 540
Query 535 GAAGAAGATCTTGCTGATTCGG-TCAGTGAGTGTGTCGAAGGGAAAAAGAGTGAAGAAGT 593
||||||||||| ||||||| | | || ||||||||| |||| |||| || ||||||||
Sbjct 541 CAAGAAGATCTTCCTGATTCTGCT-AGCGAGTGTGTCAAAGGCAAAAGGACAGAAGAAGT 599
Query 594 TAAAGAACCAGTTCAGAAACTACATAGACAAGAAGTTTTTGCTCGGCCAGCACCTATGCA 653
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 TAAAGAACCAGATCAGAAACTACATAGACAAGAAGTTTTTGCTCGGCCAGCACCAATGCA 659
Query 654 GTCCATTCGCCTACGGTCTCGTGAAAACCCGCATGAAGCCCAA-AAACCGATGTCTCGTG 712
||||||||||| || |||||||||||||| ||||||||| || |||||| |||||||||
Sbjct 660 TTCCATTCGCCTGCGCTCTCGTGAAAACCCACATGAAGCC-AAGAAACCGCTGTCTCGTG 718
Query 713 GAGCTAACCAGCTTCACCCTCAAAACCCCAACCACTTGCAATCATATGGTGACACTGACC 772
|||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 719 GAGCTAACCAGCTTCACCCTCAAAACACCAACCACTTGCAATCATATGTTGAAACTGACC 778
Query 773 TAGACGACTTTAAGGTGAAAGACATGAACTTGGATCTTGGAGAGAGATGGCCAAATCCAA 832
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAGATGACTTTAAGGTGAGAGACATGAACTTGGATCTTGGAGAGAGATGGCCAAATCCAA 838
Query 833 ATGCTGGAGAAAGATTTACAGGCACATACGATCTTGTGGAACAGATGTTTTATCTCTATG 892
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATGCTGGGGAGAGATTTACGGGCACATACGATCTTGTGGAACAGATGTTTTATCTCTATG 898
Query 893 TTCGAGTTGTTAAAGCAAAAGAGCTACCACCTGGTTCAATAACTGGCGGATGTGATCCTT 952
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 TTCGAGTTGTTAAAGCAAAAGAGCTACCACCTGGTTCAATCACTGGCGGATGTGATCCTT 958
Query 953 ACGTGGAGGTCAAGCTTGGGAACTACAAGGGAAGAACGAAA-ATTTTTGATAGGAAGACA 1011
|||| ||||||||||| ||||| ||||||||||||||||| | ||| ||||||||||||
Sbjct 959 ACGTAGAGGTCAAGCTAGGGAATTACAAGGGAAGAACGAAGCACTTT-GATAGGAAGACA 1017
Query 1012 ACAATTCCTGAATGGAACCAAGTTTTTGCATTTACCAAAGAACGGATTCAATCATCAGTT 1071
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 ACACTTCCTGAATGGAACCAAGTTTTTGCATTTACCAAAGAACGTATTCAATCATCAGTT 1077
Query 1072 CTTGAAGTTTTCGTGAAGGACAAGGAAACACTAGGTCGAGATGATATTCTTGGAAAGGTA 1131
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 CTTGAAGTTTTCGTGAAGGACAAGGAAACTCTAGGTCGAGATGATATTCTTGGAAAGGTA 1137
Query 1132 GTGTTTGATCTGAACGAGATCCCAACAAGGGTTCCACCAAACAGTCCTTTGGCTCCGCAG 1191
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1138 ATGTTTGATCTGAACGAAATCCCAACAAGGGTTCCACCAAACAGCCCTTTGGCTCCACAG 1197
Query 1192 TGGTACCGATTAGAGGATTGGAGAGGAGAAGGCAAAGTAGTACGAGGAGAGATAATGCTT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 TGGTACCGATTAGAGGATTGGAGAGGAGAAGGCAAAGTAGTACGAGGAGAGATAATGATT 1257
Query 1252 GCTGTCTGGATGGGAACTCAAGCCGATGAAGCTTTTCCTGAAGCATGGCACGCCGACTCT 1311
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCTGTTTGGATGGGAACACAAGCCGATGAAGCTTTTCCTGAAGCATGGCACGCCGACTCT 1317
Query 1312 GCTTCTGTTCATGGAGAAGGCGTGTTCAACATTAGATCCAAGGTATATGTATCTCCTAAG 1371
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1318 GCTTCTGTTCATGGAGAAGGCGTGTTCAACATCAGATCCAAGGTATATGTATCTCCTAAG 1377
Query 1372 CTGTGGTACTTAAGAGTCAATGTTATCGAAGCTCAAGACATGATCCCGAGTGATAGAAAC 1431
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1378 CTATGGTACTTAAGAGTCAATGTTATCGAAGCTCAAGACATGATCCCGAGTGATAGGAAC 1437
Query 1432 CGGCTTCCTGATGTTTTCGTCAAAGC-AAGTGTTGGAATGCAAACCCTAAAGACAAGTAT 1490
|||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 1438 CGGCTTCCTGATGTTTTCGTCAAAGCCAA-TGTCGGAATGCAAACCCTAAAGACAAGTAT 1496
Query 1491 CTGTTCTATAAAGACCACAAATCCACTCTGGAAAGAAGATCTTGTCTTTGTGGTTGCTGA 1550
|||| | || ||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1497 CTGTCCCATGAAGACAACAAATCCACTCTGGAATGAAGATCTTGTCTTTGTAGTTGCTGA 1556
Query 1551 GCCATTTGAAGAGCAGCTAGTGATCTCTGTCGAAGACCGCGTTCACACGTCTAAAGATGA 1610
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1557 GCCATTTGAAGAGCAGCTAGTGATCTCTGTAGAAGACCGCGTTCACACTTCGAAAGATGA 1616
Query 1611 AGTAATTGGCAAGATTACCCTGCCGATGAACGTGTTCGAAAAGCGTTTAGACCACCGTCC 1670
||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1617 AGTAATTGGCAAGATCACCCTACCGATGAACGTGTTCGAGAAGCGGTTAGACCACCGTCC 1676
Query 1671 AGTCCATTCCCGTTGGTTCAATCTTGATAAGTACGGTACCGGAGTTCTTGAGCCAGACGC 1730
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1677 AGTCCATTCCCGTTGGTTCAATCTTGATAAGTACGGTACCGGAGTTCTAGAGCCAGACTC 1736
Query 1731 AAGAAGAAAAGAACATAAGTTCTCGAGCCGGATTCACCTACGAATCTGTCTTGAAGGAGG 1790
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 AAGAAGAAAGGAACATAAGTTCTCGAGCCGGATTCACCTACGAATCTGTCTTGAAGGAGG 1796
Query 1791 CTACCATGTGATGGACGAGTCAACAATGTACATTAGCGACACAAGACCTACAGCTAGACA 1850
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1797 CTACCATGTGATGGACGAGTCAACAATGTACATTAGCGACACAAGACCTACGGCTAGACA 1856
Query 1851 GTTATGGAAGCAGCCGGTTGGAATGTTAGAGATTGGGATTCTTGGAGCAAATGGGTTGGT 1910
| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1857 GCTGTGGAAGCAGCCGGTGGGAATGTTAGAGATTGGGATTCTTGGAGCAAACGGGTTGGT 1916
Query 1911 GCCAATGAAGTTAAAAGACGGTAGAGGAAGCACTAACGCTTATTGTGTTGCTAAGTATGG 1970
|||||||||||| |||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 1917 GCCAATGAAGTTGAAAGACGGTAGAGGAAGCACAAACGCCTACTGTGTGGCTAAGTATGG 1976
Query 1971 TCAAAAATGGGTGAGAACCAGAACCATTCTTGACACATTAAGTCCTAGATGGAACGAGCA 2030
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1977 TCAAAAATGGGTGAGAACCAGAACCATTCTTGACACATTAAGTCCAAGATGGAACGAGCA 2036
Query 2031 GTACACATGGGAAGTATATGATCCTTGTACTGTCATTACTCTCGGAGTTTTCGACAATAG 2090
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GTACACATGGGAAGTATATGATCCTTGTACTGTCATTACTCTCGGAGTTTTCGACAATAA 2096
Query 2091 TCATTTGGGCTCTGCACAATCCGGAACTGCAGATTCTAGAGATGCAAGAATCGGAAAGGT 2150
||||||||| ||| |||||||||||||||||||||||| |||| ||||||| ||||||||
Sbjct 2097 TCATTTGGGTTCTTCACAATCCGGAACTGCAGATTCTAAAGATTCAAGAATTGGAAAGGT 2156
Query 2151 TCGAATAAGGTTGTCTACACTAGAGGCTCACAAGATCTACACACATTCATTTCCGCTACT 2210
||| || ||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2157 TCGCATTAGGCTGTCTACACTAGAGGCTCACAAGATCTACACACATTCATTTCCTCTTCT 2216
Query 2211 TGTTCTTCAACCGCACGGTCTCAAGAAAACGGGGGACCTACAAATATCTGTCCGTTTTAC 2270
|||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||
Sbjct 2217 TGTTCTTCAACCGCACGGTCTCAAAAAAACAGGCGACCTACAACTATCTGTCCGTTTTAC 2276
Query 2271 AACTCTCTCTTTAGCCAACATCATCTACAATTACGGCCAC-CCGCTTCTCCCCAAAATGC 2329
|| ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2277 GACCCTCTCTTTAACCAACATCATCTACAATTACGGCCACACC-CTTCTCCCCAAAATGC 2335
Query 2330 ACTATCTTTTCCCTTTCACGGTCAACCAAGTAGATGGTTTAAGGTACCAAGCCATGAACA 2389
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2336 ACTATCTTTTCCCTTTCACGGTCAACCAAGTAGACGGTTTAAGGTACCAAGCCATGAACA 2395
Query 2390 TTGTTTCAACCCGCCTTGGCCGAGCTGAGCCACCACTTAGGAAAGAGGTCGTCGAGTACA 2449
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 TTGTTGCAACCCGCCTTGGCCGAGCTGAGCCACCACTTAGGAAAGAGGTCGTCGAGTACA 2455
Query 2450 TGCTGGATGTAGATTCTCACTTATGGAGCATGAGAAGAAGCAAAGCCAACTTTTTTCGCA 2509
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2456 TGTTGGATGTAGATTCTCACCTATGGAGCATGAGAAGAAGCAAAGCCAACTTTTTTCGCA 2515
Query 2510 TAATGTCGCTTCTTTCAGGTTATTTCTTGGTCGGGAAGTGGCTCGAAGATGTTTGCAACT 2569
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2516 TAATGTCGCTTCTTTCAGGTTATTTCTTGGTCGGGAAGTGGCTAGAAGATGTTTGCAACT 2575
Query 2570 GGAGATACCCGGTTACTTCGGTTCTGGTCAATGTCTTGTTCTTCATTTTGGTCATGTACC 2629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 GGAGATACCCGGTTACTTCGGTTCTGGTCAATGTCTTGTTCTTCATTTTGGTCATGTACC 2635
Query 2630 CTGAACTGATTTTGCCTACCATGTTTCTCTACATGTTCTTCATTGGATTGTGGAACTTCA 2689
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2636 CTGAGTTGATTTTGCCTACCATGTTTCTCTACATGTTCTTCATCGGATTGTGGAACTTCA 2695
Query 2690 GGTCCAGGCCGAGACACCCTCCTCACATGGATATGAAACTCTCATGGGCCGAGGCTGTAG 2749
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2696 GGTCCAGGCCGAGACACCCTCCTCACATGGATATGAAACTTTCATGGGCCGAGGCTGTTG 2755
Query 2750 GTCCTGATGAGCTCGATGAAGAGTTTGACACATTCCCAACGTCTCGGTCACAAGAGTTGG 2809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2756 GTCCTGATGAGCTCGATGAAGAGTTTGACACATTCCCAACGTCTCGGTCACAAGAGTTGG 2815
Query 2810 TGCGTCTGAGATATGACCGGCTCAGAAGCGTGGCAGGTAGGATCCAGACTGTTGTTGGAG 2869
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2816 TCCGGCTGAGGTATGACCGGCTCAGAAGCGTGGCAGGTAGGATCCAGACTGTTGTTGGAG 2875
Query 2870 ACATTGCAGCTCAGGGAGAGAGAATCCAGTCACTTTTAAGCTGGCGAGACCCCAGGGCTA 2929
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2876 ATATTGCAGCTCAGGGAGAGAGAATTCAGTCACTTTTAAGCTGGCGAGACCCCAGGGCTA 2935
Query 2930 CAAGCCTCTTCATTTTGTTCTGCTTGGCTGCGTCGGTGGTCCTATACGCAATGCCGTTCA 2989
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2936 CAAGCCTCTTCATCTTGTTCTGCTTGGCTGCGTCGGTGGTCCTTTACGCAATGCCGTTCA 2995
Query 2990 AAGCAATAGCACTAGCCAGTGGGCTATACTATCTAAGGCATCCAAAGTTTAGAAGCAAGT 3049
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2996 AAGGAATAGCACTAGCTAGTGGGCTATACTATCTAAGGCACCCAAAGTTTAGAAGCAAGT 3055
Query 3050 TACCTTCTCTGCCAAGTAACTTCTTCAAGAGATTGCCGTCTAGTACCGATAGTCTTCTTT 3109
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 3056 TACCTTCTCTGCCAAGTAACTTCTTCAAGAGATTGCCGTCTCGTACAGATAGCCTTCTTT 3115
Query 3110 GACGACCAAAACTCTTTCTTGAGCAAGATTTACAATAAAATGACTTTGTTA-AACTTTTT 3168
||| | ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 3116 GAC--CTAAA-CTCTTTCTTTTGCAAGATTTACAATAAAATGACTTTGTTATAACTTTTT 3172
Query 3169 CTTC-----CACTTCTACTATGAAATAATATTACGAACATGTCATAAGGTTTGTAA 3219
||| |||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 3173 CTTTTGTTTCACTTCTAATATGAAATAATATTACGAACATATCATAAGGTTTGTAA 3228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122088694184
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5