BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48070.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494858 jgi|Araly1|494858|fgenesh2_kg.8__674__AT5G48070.1 1709 0.0
Ahg491722 jgi|Araly1|491722|fgenesh2_kg.7__1155__AT4G30280.1 913 0.0
Ahg491721 jgi|Araly1|491721|fgenesh2_kg.7__1154__AT4G30290.1 904 0.0
Ahg475629 jgi|Araly1|475629|fgenesh2_kg.2__759__AT4G30280.1 896 0.0
Ahg475586 jgi|Araly1|475586|fgenesh2_kg.2__716__AT4G30280.1 597 5e-170
> Ahg494858 jgi|Araly1|494858|fgenesh2_kg.8__674__AT5G48070.1
Length=1102
Score = 1709 bits (925), Expect = 0.0
Identities = 1057/1118 (95%), Gaps = 19/1118 (2%)
Strand=Plus/Plus
Query 8 ATCCATCTAAGATACTATAACTACTCTTTCCAAAAGCAATTTTAAATGGTGTCATTTTGC 67
|||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 1 ATCCATCTAAGATAGTATAACTTCTCTTTCCAAAATCAATTTT-AATGGTGTCATTTTGC 59
Query 68 GGTAGAAGGTTCGCCTTCTTGATTATCTTTCTCTTTGCAGCACAATATGAGCGTGTCTAC 127
| |||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 60 GATAGAAGGTTCGCATTCCTGATTATCTTTCTCTTCGCTGCACAATATGAGCGTGTCTAT 119
Query 128 GCTGGTAGCTTTCACAAGGACGTTCAGATACATTGGGGTGATGGCCGTGGAAAAATTCTC 187
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 120 GCTGGTAGCTTTCACAAGGACGTTCAGATACACTGGGGTGATGGCCGTGGAAAGATTCTC 179
Query 188 GACAATGTCGGAAATCTTCTTTCTCTCTCGCTCGACAAATTCTCTGGTTCCGGTTTTCAG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GACAATGTCGGAAATCTTCTTTCTCTCTCGCTCGACAAATTCTCTGGTTCCGGTTTTCAG 239
Query 248 TCCCATCAAGAGTTTCTTTATGGCAAAGTAGAGGTTCAAATGAAACTTGTACCTGGTAAC 307
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 240 TCCCATCAAGAGTTTCTATATGGAAAAGTTGAGGTTCAAATGAAACTTGTACCTGGTAAC 299
Query 308 TCTGCTGGAACAGTGACAACATTCTATCTAAAATCTCCTGGAACTACATGGGATGAAATA 367
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 300 TCTGCTGGAACAGTGACAACATTCTATCTAAAATCGCCTGGAACTACGTGGGATGAGATA 359
Query 368 GATTTTGAGTTCTTGGGAAACATAAGTGGTCATCCATATACTCTTCATACTAATGTTTAC 427
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 GATTTTGAGTTCTTGGGAAACATAAGTGGTCATCCATATACACTTCATACTAATGTTTAC 419
Query 428 ACAAAAGGCACAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACTGTTGAC 487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 ACAAAAGGCACAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACTGTACAC 479
Query 488 TTTCACACTTATTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATAGATGGAATT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTCACACTTATTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATAGATGGAATT 539
Query 548 CCGATAAGAGAATTCAAGAACTCCGAAGCCCTTGGAGTTCCCTTCCCAAAGCATCAACCA 607
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 540 CCGATAAGAGAATTCAAGAACTCCGAATCCGTTGGAGTTCCCTTCCCAAAGCATCAACCA 599
Query 608 ATGAGGCTCTATGCTAGCCTTTGGGAAGCCGAGCATTGGGCTACAAGAGGAGGATTAGAG 667
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 ATGAGACTCTATGCGAGCCTTTGGGAAGCCGAGCATTGGGCCACAAGAGGAGGATTAGAG 659
Query 668 AAAACAGACTGGTCCAAAGCTCCTTTCACCGCTTTCTACAGAAACTACAATGTGGATGCA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAACAGACTGGTCCAAAGCTCCTTTCACCGCTTTCTACAGAAACTACAATGTGGATGCA 719
Query 728 TGTGTGTGGTC-CAATGGAAAATCATCATGCTCTGCGAATTCCTCATGGTTTACTCAAGT 786
||||| ||| | | ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 720 TGTGTATGGGCTC-ATGGAAAATCATCATGCTCTGCGCATTCCTCATGGTTCACTCAAGT 778
Query 787 ACTTGATTTCAAAGGCAAGAATAGAGTGAAATGGGCACAGAGAAAGTACATGGTCTACAA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTTGATTTCAAAGGCAAGAATAGAGTGAAATGGGCACAGAGAAAGTACATGGTCTACAA 838
Query 847 CTATTGCACTGATAAGAAAAGATTTCCTCAAGGTGCTCCTCCAGAGTGCAGTTAAATAAC 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 CTATTGCACTGATAAGAAAAGATTTCCTCAAGGTGCTCCTCCAGAGTGCAGTTAAATCAC 898
Query 907 TGATTGCTTGATTCACGAATTAATCACGTGGCATTGTCTTTGTAACGGAAATGATGTTTA 966
|||||| ||||||||||||| ||||| |||||||||| |||||||| |||||||||||||
Sbjct 899 TGATTGTTTGATTCACGAATAAATCATGTGGCATTGTTTTTGTAACCGAAATGATGTTTA 958
Query 967 TCTATATTTTGGCACTAGCTGAGTATTTGCGCTAAATAAATTACTTCTCTATTAGTAATT 1026
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 959 TCTATATTTTGGCACTAGCTGAGTATTCGCGCTAAACAAATTACTTCTCTATTAGTAA-- 1016
Query 1027 GtttttttttGTTCTATTATGTTGTTTCTTTTATATTATTTGTAAGTGTGATTTG-CGTT 1085
|||||||||| || ||| ||| ||| ||||||||||| |||||||||| | ||
Sbjct 1017 GTTTTTTTTT-TT-------GTT-TTT-TTTG-TATTATTTGTATGTGTGATTTGGC-TT 1064
Query 1086 AGTTACCTAG-TTACTTGTTTCAGTAACTTTTGTTATT 1122
||||| ||| ||||||||||| |||||||||||||||
Sbjct 1065 AGTTATCTAAATTACTTGTTTCCGTAACTTTTGTTATT 1102
> Ahg491722 jgi|Araly1|491722|fgenesh2_kg.7__1155__AT4G30280.1
Length=1008
Score = 913 bits (494), Expect = 0.0
Identities = 749/870 (86%), Gaps = 26/870 (3%)
Strand=Plus/Plus
Query 64 TTGCGGTAGAAGGTTCGCCTTCTTGATTATCTTTCTCTTTGCAGCACAATATGAGCGTGT 123
||| |||| ||| || || ||||||||| | ||||| ||||| ||||||| || || |||
Sbjct 60 TTGTGGTACAAGTTTTGCGTTCTTGATTTTGTTTCTTTTTGCGGCACAATCTGTGCATGT 119
Query 124 CTACGCTGGTAGCTTTCACAAGGACGTTCAGATACATTGGGGTGATGGCCGTGGAAAAAT 183
| | || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 120 CAATGCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGAT 179
Query 184 TCTCGACA-ATG-TCGGAAATCTTCTTTCTCTCTCGCTCGACAAATTCTCTGGTTCCGGT 241
|| ||||| | | | ||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 180 TCGCGACAGA-GAT-GGAAAGCTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGT 237
Query 242 TTTCAGTCCCATCAAGAGTTTCTTTATGGCAAAG-TAGAGGTTCAAATGAAACTTGTAC- 299
|||||||| | || |||||||| |||||||||| | |||||||||||||||||||| |
Sbjct 238 TTTCAGTCTAACCAGGAGTTTCTCTATGGCAAAGCT-GAGGTTCAAATGAAACTTGT-CT 295
Query 300 CTGGTAACTCTGCTGGAACAGTGACAACATTCTATCTAAAATCTCCTGGAACTACATGGG 359
|||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| ||||
Sbjct 296 CTGGTAACTCAGCTGGAACAGTGACAACATTTTATCTTAAATCTCCGGGAACTACGTGGG 355
Query 360 ATGAAATAGATTTTGAGTTCTTGGGAAA-CATAAGTGGTCATCCATATACTCTTCATACT 418
|||| || ||||| |||||||||||||| | || ||||||||||||||||||| ||||||
Sbjct 356 ATGAGATTGATTTCGAGTTCTTGGGAAATCTTA-GTGGTCATCCATATACTCTCCATACT 414
Query 419 AATGTTTACACAAAAGGCACAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCA 478
|||||||||||||||||| | ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 415 AATGTTTACACAAAAGGCTCTGGAGATAAAGAACAACAATTTCATCTATGGTTCGACCCA 474
Query 479 ACTGTTGACTTTCACACTTATTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATA 538
|| ||| |||||||||||||||| |||| |||||||||||||||| | ||||||||| |
Sbjct 475 ACCGTTAACTTTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATTTTTACAGTT 534
Query 539 GATGGAATTCCGATAAGAGAATTCAAGAACTCCGAAGCCC-TTGGAGTTCCCTTCCCAAA 597
||||||||||| || ||||| |||||||| ||||| | | |||||||||| |||||||
Sbjct 535 GATGGAATTCCCATTAGAGAGTTCAAGAATTCCGA-GTCAATTGGAGTTCCGTTCCCAAC 593
Query 598 GCATCAACCAATGAGGCTCTATGCTAGCCTTTGGGAAGCCGAGCATTGGGCTACAAGAGG 657
| | ||||||||||||||||| || || || |||||||||||||||||||||||||| ||
Sbjct 594 GAAGCAACCAATGAGGCTCTACGCGAGTCTATGGGAAGCCGAGCATTGGGCTACAAGGGG 653
Query 658 AGGATTAGAGAAAACAGACTGGTCCAAAG-CTCCTTTCACCGCTTTCTACAGAAACTACA 716
|||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||
Sbjct 654 AGGATTAGAGAAAACAGATTGGTC-AAAGGCTCCTTTTACCGCTTTCTACAGAAACTACA 712
Query 717 ATGTGGATGCATGTGTGTGGTCCAATGGAAAATCATCATG-CTCTGCGAATTCCTC-ATG 774
|||| |||| ||||| ||| | |||||||||||||| || | | ||||||| || |||
Sbjct 713 ATGTTGATGGGTGTGTATGGGCTAATGGAAAATCATCTTGTCCCA-CGAATTC-TCCATG 770
Query 775 GTTTACTCAAGTACTTGATTTCAAA-GGCAAGA-ATAGAGTGAAATGG-GCACAGAGAAA 831
||| |||||| ||| |||| |||| ||| ||| | ||| ||||| || | |||||| ||
Sbjct 771 GTTCACTCAACAACTCGATT-CAAACGGCCAGACA-AGAATGAAA-GGAGTACAGAGTAA 827
Query 832 GTACATGGTCTACAACTATTGCACTGATAAGAAAAGATTTCCTCAAGGTGCTCCTCCAGA 891
|||||||||||||||||||||||| ||||| ||||| ||||||| ||||| ||| ||||
Sbjct 828 GTACATGGTCTACAACTATTGCACCGATAAAAAAAGGTTTCCTCGAGGTGTTCCAGCAGA 887
Query 892 GTGCAGTTAAATAACTGATTGCTT-GATTC 920
|||||||||||| ||||| ||| |||||
Sbjct 888 GTGCAGTTAAATTGTTGATT-CTTTGATTC 916
> Ahg491721 jgi|Araly1|491721|fgenesh2_kg.7__1154__AT4G30290.1
Length=961
Score = 904 bits (489), Expect = 0.0
Identities = 757/884 (86%), Gaps = 28/884 (3%)
Strand=Plus/Plus
Query 83 TTCTTGATTATCTTTCTCTTTGCAGCACAA--TATGAGCGTGTCTACGCTGGTAGCTTTC 140
||||||||| |||||||||||||||||||| ||||||| ||||| || || |||||||
Sbjct 62 TTCTTGATTCTCTTTCTCTTTGCAGCACAATCTATGAGC--GTCTATGCAGGCAGCTTTC 119
Query 141 ACAAGGACGTTCAGATACATTGGGGTGATGGCCGTGGAAAAATTCTCGACAATG-TCGGA 199
|||| |||||| | ||||||||||||||||| || ||||| |||| ||| |||| |||
Sbjct 120 ACAAAGACGTTAAAATACATTGGGGTGATGGTCGAGGAAAGATTCACGATAATGAAGGGA 179
Query 200 AATCTTCTTTCTCTCTCGCTCGACAAATTC-TCTGGTTCCGGTTTTCAGTCCCATCAAGA 258
|| ||||||||||||||||| |||||| || |||||||| ||||| || || |||||||
Sbjct 180 AA-CTTCTTTCTCTCTCGCTTGACAAA-TCTTCTGGTTCAGGTTTCCAATCTAATCAAGA 237
Query 259 GTTTCTTTATGGCAAAGTAGAGGTTCAAATGAAACTTGTACCTGGTAACTCTGCTGGAAC 318
|||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 GTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTCCCTGGTAACTCTGCTGGAAC 297
Query 319 AGTGACAACATTCTATCTAAAATCTCCTGGAACTACATGGGATGAAATAGATTTTGAGTT 378
|| |||||||||||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct 298 CGTCACAACATTCTATCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAGTT 357
Query 379 CTTGGGAAACATAAGTGGTCATCCATATACTCTTCATACTAATGTTTACACAAAAGGCAC 438
|||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 358 CTTGGGGAACATAAGTGGTCATCCATATACTCTCCACACTAATGTTTACACAAAAGGCTC 417
Query 439 AGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACTGTTGACTTTCACACTTA 498
|||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||
Sbjct 418 AGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACCGCTAACTTCCACACTTA 477
Query 499 TTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATAGATGGAATTCCGATAAGAGA 558
|| |||| ||||||||| |||||| | |||||||| | ||||| ||||| || |||||
Sbjct 478 CTGCATCACATGGAATCCTCAAAGGATTATTTTTACTGTTGATGGGATTCCAATTAGAGA 537
Query 559 ATTCAAGAACT-CCGAAGCC-CTTGGAGTTCCC-TTCCCAAAGCATCAACCAATGAGGCT 615
|||| ||| | |||| | | | |||||| ||| ||||||| | | ||||||||||||||
Sbjct 538 GTTCATGAA-TGCCGA-GTCACGTGGAGT-CCCATTCCCAACGAAGCAACCAATGAGGCT 594
Query 616 CTATGCTAGCCTTTGGGAAGCCGAGCATTGGGCTACAAGAGGAGGATTAGAGAAAACAGA 675
|||||| || || |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 595 CTATGCGAGTCTCTGGGAAGCTGAGCATTGGGCTACAAGGGGAGGATTAGAGAAAACAGA 654
Query 676 CTGGTCCAAAGCTCCTTTCACCGCTTTCTACAGAAACTACAATGTGGATGCATGTGTGTG 735
||||| |||||||||||||||||||| ||||||||||||||||| || | |||||| ||
Sbjct 655 TTGGTCAAAAGCTCCTTTCACCGCTTTTTACAGAAACTACAATGTCGAAGGATGTGTTTG 714
Query 736 GTCCAATGGAAAATCATCATGCTCT-GCGAATTCCTCA-TGGTTTACTCAAGTACTTGAT 793
| | |||||||||||| | || || || ||||| ||| ||||| |||||| ||| |||
Sbjct 715 GGCTAATGGAAAATCAGCTTG-TCCAGCAAATTC-TCAATGGTTCACTCAAAAACTCGAT 772
Query 794 TTCAAA-GGCAAGAATAGAGTGAAATGGGCACAGAG-AAAGTACATGGTCTACAACTATT 851
| | || ||| |||| ||| ||||| ||| ||| || ||| |||||||| ||||||||||
Sbjct 773 T-CGAATGGCCAGAAAAGAATGAAAGGGGTACAAAGTAAA-TACATGGTTTACAACTATT 830
Query 852 GCACTGATAAGAAA-AGATTTCCTCAAGGTGCTCCTCCAGAGTGCAGTTAAATAACTGAT 910
|||| ||||| ||| || ||||||| ||||| ||||||||||||||| ||||| | ||||
Sbjct 831 GCACCGATAA-AAAGAGGTTTCCTCGAGGTGTTCCTCCAGAGTGCAGCTAAATTATTGAT 889
Query 911 TGCTT-GATTCACGAATTAA-TCACGTGGCATTGTCTTTGTAAC 952
| ||| ||||| |||| || | || ||||||||||||||||||
Sbjct 890 T-CTTTGATTCGTGAAT-AAGTTACTTGGCATTGTCTTTGTAAC 931
> Ahg475629 jgi|Araly1|475629|fgenesh2_kg.2__759__AT4G30280.1
Length=1023
Score = 896 bits (485), Expect = 0.0
Identities = 783/925 (85%), Gaps = 28/925 (3%)
Strand=Plus/Plus
Query 64 TTGCGGTAGAAGGTTCGCCTTCTTGATTATCTTTC-TCTTTGCAGCACAATATGAGCGTG 122
||| |||| ||| || | ||||| ||| | |||| || |||| | |||||||| || ||
Sbjct 41 TTGTGGTACAAGTTTTTCGTTCTTAATTCTGTTTCTTC-TTGCGGGACAATATGTGCATG 99
Query 123 TCTACGCTGGTAGCTTTCACAAGGACGTTCAGATACATTGGGGTGATGGCCGTGGAAAAA 182
|||| || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 100 TCTATGCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGA 159
Query 183 TTCTCGACAATG-TCGGAAATCTTCTTTCTCTCTCGCTCGACAAATTCTCTGGTTCCGGT 241
||| |||||| | | ||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 160 TTCACGACAAAGAT-GGAAAACTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGT 218
Query 242 TTTCAGTCCCATCAAGAGTTTCTTTATGGCAAAGTAGAGGTTCAAATGAAACTTGTACCT 301
|||||||| | || |||||||| |||||||||| |||||||||||||||||||| |||
Sbjct 219 TTTCAGTCTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTTCCT 278
Query 302 GGTAACTCTGCTGGAACAGTGACAACATTCTATCTAAAATCTCCTGGAACTACATGGGAT 361
||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct 279 GGTAATTCAGCTGGAACAGTAACAACATTCTATCTAAAATCGCCGGGAACTACGTGGGAT 338
Query 362 GAAATAGATTTTGAGTTCTTGGGAAACATAAGTGGTCATCCATATACTCTTCATACTAAT 421
|| || ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 339 GAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCGTATACTCTCCATACTAAT 398
Query 422 GTTTACACAAAAGGCACAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACT 481
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 399 GTTTACACAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGGTTCGACCCCACC 458
Query 482 GTTGACTTTCACACTTATTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATAGAT 541
||| | |||||||||||||| |||| |||||||||||||||| | |||||||| | |||
Sbjct 459 GTTAATTTTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATTTTTACGGTTGAT 518
Query 542 GGAATTCCGATAAGAGAATTCAAGAACTCCGAAGCCCTTGGAGTTCCCTTCCCAA--AGC 599
|||||||| || ||||| ||||| ||||| || || |||||||||| ||||||| ||
Sbjct 519 GGAATTCCTATTAGAGAGTTCAAAAACTCTGAGGCAATTGGAGTTCCGTTCCCAACGAG- 577
Query 600 ATCAACCAATGAGGCTCTATGCTAGCCTTTGGGAAGCCGAGCATTGGGCTACAAGAGGAG 659
| ||||||||||||||||| || || || |||||||||||||||||||| ||||||||||
Sbjct 578 A-CAACCAATGAGGCTCTACGCGAGTCTCTGGGAAGCCGAGCATTGGGCAACAAGAGGAG 636
Query 660 GATTAGAGAAAACAGACTGGTCCAAAGCTCCTTTCACCGCTTTCTACAGAAACTACAATG 719
|||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 637 GATTAGAGAAAACAGATTGGTCAAAAGCTCCTTTTACTGCTTTCTACAGAAACTACAATG 696
Query 720 TGGATGCATGTGTGTGGTCCAATGGAAAATCATCATGCTCTGCGAATTCCTCATGGTTTA 779
| |||| |||||| ||| | || |||||||||||||| || | ||||||| ||||||| |
Sbjct 697 TCGATGGATGTGTATGGGCTAACGGAAAATCATCATGTTCCGAGAATTCCCCATGGTTCA 756
Query 780 CTCAAGTACTTGATTTCAAA-GGCAAGA-ATAGAGTGAAATGG-GCACAGAG-AAAGTAC 835
||||| ||| |||| |||| ||| ||| | ||| ||||| || | ||| || ||| |||
Sbjct 757 CTCAAAAACTCGATT-CAAACGGCCAGACA-AGAATGAAA-GGTGTACAAAGTAAA-TAC 812
Query 836 ATGGTCTACAACTATTGCACTGATAAGAA-AAGATTTCCTCAAGGTGCTCCTCCAGAGTG 894
||| |||||||||||||||| ||||| || ||| ||||||| | || |||| ||| |||
Sbjct 813 ATGATCTACAACTATTGCACCGATAA-AAGAAGGTTTCCTCGCGATGTTCCTGCAGTGTG 871
Query 895 CAGTTAAATAACTGATTGCTT-GATTCACGAATTAA-TCACGTGGCATTGTCTTTGTAAC 952
|| |||||| ||||| ||| ||| |||| || | || ||| |||| |||||||||
Sbjct 872 CACTTAAATTGTTGATT-CTTTGAT----GAAT-AAGTTACTTGGTATTGCCTTTGTAAC 925
Query 953 GGAAATGA-TGTTTATCTATATTTT 976
|| | | | ||||||||| ||||
Sbjct 926 TCAATTAAGTTTTTATCTAT-TTTT 949
> Ahg475586 jgi|Araly1|475586|fgenesh2_kg.2__716__AT4G30280.1
Length=993
Score = 597 bits (323), Expect = 5e-170
Identities = 457/523 (87%), Gaps = 4/523 (1%)
Strand=Plus/Plus
Query 64 TTGCGGTAGAAGGTTCGCCTTCTTGATTATCTTTC-TCTTTGCAGCACAATATGAGCGTG 122
||| |||| ||| || | ||||| ||| | |||| || |||| | |||||||| || ||
Sbjct 41 TTGTGGTACAAGTTTTTCGTTCTTAATTCTGTTTCTTC-TTGCGGGACAATATGTGCATG 99
Query 123 TCTACGCTGGTAGCTTTCACAAGGACGTTCAGATACATTGGGGTGATGGCCGTGGAAAAA 182
|||| || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 100 TCTATGCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGA 159
Query 183 TTCTCGACAATG-TCGGAAATCTTCTTTCTCTCTCGCTCGACAAATTCTCTGGTTCCGGT 241
||| |||||| | | ||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 160 TTCACGACAAAGAT-GGAAAACTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGT 218
Query 242 TTTCAGTCCCATCAAGAGTTTCTTTATGGCAAAGTAGAGGTTCAAATGAAACTTGTACCT 301
|||||||| | || |||||||| |||||||||| |||||||||||||||||||| |||
Sbjct 219 TTTCAGTCTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTTCCT 278
Query 302 GGTAACTCTGCTGGAACAGTGACAACATTCTATCTAAAATCTCCTGGAACTACATGGGAT 361
||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct 279 GGTAATTCAGCTGGAACAGTAACAACATTCTATCTAAAATCGCCGGGAACTACGTGGGAT 338
Query 362 GAAATAGATTTTGAGTTCTTGGGAAACATAAGTGGTCATCCATATACTCTTCATACTAAT 421
|| || ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 339 GAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCGTATACTCTCCATACTAAT 398
Query 422 GTTTACACAAAAGGCACAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACT 481
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 399 GTTTACACAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGGTTCGACCCAACC 458
Query 482 GTTGACTTTCACACTTATTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATAGAT 541
||| |||||||||||||||| |||| |||||||||||||||| | |||||||| | |||
Sbjct 459 GTTAACTTTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATTTTTACGGTTGAT 518
Query 542 GGAATTCCGATAAGAGAATTCAAGAACTCCGAAGCCCTTGGAG 584
|||||||| || ||||| ||||| ||||| || || ||||||
Sbjct 519 GGAATTCCTATTAGAGAGTTCAAAAACTCTGAGGCAATTGGAG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5