BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48090.1
Length=2781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494862 jgi|Araly1|494862|fgenesh2_kg.8__678__AT5G48090.1 2734 0.0
Ahg331222 jgi|Araly1|331222|fgenesh1_pm.C_scaffold_8000565 401 1e-110
> Ahg494862 jgi|Araly1|494862|fgenesh2_kg.8__678__AT5G48090.1
Length=1878
Score = 2734 bits (1480), Expect = 0.0
Identities = 1779/1917 (93%), Gaps = 45/1917 (2%)
Strand=Plus/Plus
Query 597 ATGGAACAGGACTCCATTGTTGAGAATATGACAGATGAGGAAAACAGCAGCAGTAGCGAT 656
||||||||| ||| ||||||| | ||||||| |||||||||||| |||||| ||||||||
Sbjct 1 ATGGAACAGAACTTCATTGTTAATAATATGATAGATGAGGAAAATAGCAGCGGTAGCGAT 60
Query 657 GATGATTCTGAGGCGAACCTGCAGTTTGATCCAGTATGTTCTATTTGTGACAATGGTGGT 716
||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 GATGATTCTCAGACGAACCTGCAGTTTGATCCTGTCTGTTCTATTTGTGACAATGGTGGT 120
Query 717 TATGTTCTGTGTTGTGAAGGAAGTTGCTTGAGATCTTTCCATCCAACCATAGCTGATGGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGTTCTGTGTTGTGAAGGAAGTTGCTTGAGATCTTTCCATCCAACCATAGCTGATGGA 180
Query 777 ATTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAGGCACTCGGG 836
||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 181 ATTGAGACAGAGTGCGAATCGCTAGGATTCACTTATAAGACTCAGATTCAAGCACTCGGG 240
Query 837 ACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGCTATGCTTGTGGCGAATTG 896
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCTATTTGTGTAACAACTGTCTCTATAAACAGCACCAGTGCTATGCTTGTGGCGAATTG 300
Query 897 GGATCCTCTGATGAAAATTTCTCTCAACAGGTCTTCCCTTGCT-CTGCGTCAAACTGTGG 955
||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||
Sbjct 301 GGATCCTCTGATGAAAATTCCTCTCAACAGGTCTTCCCTTG-TCCTGCGTCAAATTGTGG 359
Query 956 TCATTTCTACCATCCTGA-ATGCGTTGCAAGACTTCTCTGTGCTGATGATCAAAACAAAG 1014
||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 360 TCATTTCTACCATCC-CATATGTGTTGCAAGACTTCTCTGTGCTGATGATCAAATCAAAG 418
Query 1015 CAGAAGAACTTCAAGCCAAGATTGCTGCTAGAGACTGCTTTGCCTGTCCTCTACACACAT 1074
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 419 CAGAAGAACTTCAAGCCAAGATTGCTGCTAGAGACTACTTTGCATGTCCTCTACACATAT 478
Query 1075 GTAAACTCTGTAACATGAGTGAAGACAAGAATCAATATGCG-TGCATTTTGCTGTATGCA 1133
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 479 GTAAAGTCTGTAACATGAGTGAAGACAAGAATGAATATGCGTTGCATTTTGCTGTATGCA 538
Query 1134 GACGTTGCCCAACAGCTTATCACAGAAAATGTTTACCTAGGGATATTACTTCTGAACTCA 1193
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 GACGTTGCCCAACAGCTTATCACAGAAAATGTTTACCTAGGGAGATTACTTCTGAACTCA 598
Query 1194 ACTCTGACGATGAGACATTGCAAAGAGCTTGGGAAAGTCTGCTTCCTTACAACCGCATTC 1253
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 599 ACTCTGACGATGACACATTGCAAAGAGCTTGGGAAAGACTGCTTCCCTACAACCGCATTC 658
Query 1254 TTATATATTGTTTCTTTTCATAAACTTTTGAACAGGGCCCATGAGATAGACGGTCTTATT 1313
|||||||||| ||| |||||||||||||||| || ||||
Sbjct 659 TTATATATTG----------------TTT------GGCCCATGAGATAGACATTCATATT 696
Query 1314 CTTACTCCAGCTAGAGACCACTTAGTTTTTCCTGATGTATCTGGACAAAGAAGAACACGA 1373
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 697 CTTACTCCAGCTAGAGACCACTTAATTTTTCCTGATATATCTGGACAAAGAAGAACACGA 756
Query 1374 AGTCACGGGCTAGCACAGTTCAAAGAGGATGTTCTGGGTATGGAGACGGAT-CATTGTCA 1432
||||||||||||| |||||||||||||||||||| | |||||||||| ||| || ||
Sbjct 757 AGTCACGGGCTAGAACAGTTCAAAGAGGATGTTCCGAGTATGGAGACAGATCCA-AACCA 815
Query 1433 TCATGAGGGTCTATTTACTGGTCTTGGTATTACTGACCCTTATGAGAAACCaaaaaaaGA 1492
|| |||||||||||||||| ||||||| ||| |||||||||| |||||||||| |||||
Sbjct 816 TCGTGAGGGTCTATTTACTCATCTTGGTGTTAGTGACCCTTATAAGAAACCAAAGAAAGA 875
Query 1493 TATTAGCTG-CGATGAGGTGGAACAGAGGGTGATGGGTATAATCGATGAAGTGGAATCCT 1551
|||||| || | |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 876 TATTAG-TGTCAATGATGTGGAACAGAGGGTGATGGGTATAATCGACGAAGTGGAATCCT 934
Query 1552 CGTTTAACTTTGATGAGTTCGTTAAGTCTCGTAGGCCAACCCATATAAAATCCTACCACT 1611
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 935 CGTTTAACTTTGACGAGTTCGTTAAGTCCCGTAGGCCAACCCATATAAAATCCTACCACT 994
Query 1612 CAGGAAACT-ATTTTAGTAAGAACATCACAACAGGATTGGTTCGGACTCATGTCAATGCT 1670
||||||| | || | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 995 CAGGAAA-TGATATCAGTAAGAACATCACAACAGGATTGGTTCAGACTCATGTCAATGCT 1053
Query 1671 GCTCGAGCTGCCTTAAAGATGTTTGAAGAAGGGCGTGACAGAGATGCAAGAGCTTTATTT 1730
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1054 GCTCGAGCTGCCTTAAAGATGTTTGAAGAAGGGCGTGACAAAGATGCAAGAGCTATATTT 1113
Query 1731 GACCCAGATAGCCTACTCCAACTCATGAAGCATAAGAAAAAGCTTGAAATTTCGCCTTTT 1790
|||||||||| |||||||||||||||||||||||||| |||||||||| | || |
Sbjct 1114 GACCCAGATATCCTACTCCAACTCATGAAGCATAAGACGAAGCTTGAAA--T----TTAT 1167
Query 1791 CTCCATGGTATGCGCTACACATCGTTTGGTCGTCACTTCACAAATCCAGAGAAGCTTAAA 1850
|| | | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CT---T--T-CGCGCTACACGTCGTTTGGTCGTCACTTCACAAATCCAGAGAAGCTTAAA 1221
Query 1851 GAGATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGGTAGTCGACTTTTGC 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GAGATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGGTAGTCGACTTTTGC 1281
Query 1911 TGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAAAAGCTTATGGAAACGGGGAAAATA 1970
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1282 TGTGGCTCCAATGACTTCAGTTGTTTGATGAAAGAAAAGCTTATGGAAACGGGGAAAACA 1341
Query 1971 TGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGAACAACTTCAATTTTGAGATGAGA 2030
||||||| ||||||||| |||||||| | ||||||||||||||| |||||||||| ||||
Sbjct 1342 TGCTTCTTCAAAAACTTTGATCTCATTCAACCTAAGAACAACTTTAATTTTGAGAAGAGA 1401
Query 2031 GATTGGCTGAGTGTGAAGGAAGAAGAGTTACCCGATGGCTCTCAACTGATTATGGGATTG 2090
|| ||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1402 GACTGGTTGAGTGTGAAGCCAGAAGAGTTACCCGATGGCTCTCAACTGATAATGGGATTG 1461
Query 2091 AACCCGCCTTTTGGTTACAAAGCCAGTCTTGCTAACACTTTCATTAAGAAGGCCCTCGAG 2150
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AACCCGCCCTTCGGTCACAAAGCCAGTCTTGCTAACACTTTCATTAAGAAGGCCCTCGAG 1521
Query 2151 TTTAAACCGAAGATCTTAATCCTCATCGTACCAAGTGAAACAAAAAGGGTCGATGCGATT 2210
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1522 TTTAAACCGAAGATCTTAATCCTCATCGTACCAACTGAAACAAAAAGGGTCGATGCGATT 1581
Query 2211 GATGATTATGAGTTGATTTGGGAGGACAGAAATTTACTTGCTGGAATGTCGTTCTACTTG 2270
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1582 GCTGATTATGAGTTGATTTGGGAGGACAGAAATTTACTTACTGGAATGTCGTTCTACTTG 1641
Query 2271 CCTGGGTCAGTAGATGTGAATGATAAAACGATAGAGCAGTGGAACAATATAACGCCACCT 2330
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1642 CCCGGGTCAGTAGATGTGAATGATAAAACGATAGAGCAGTGGAACAATATACCGCCACCT 1701
Query 2331 CTATACCTTTGGAGCCGAAGGGATTTGAGTAGAAGCCACAAGACCACAGCAGTTCAACAG 2390
|| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 1702 CTGTACCTTTGGAGCCGAAGGGACTGGAGTAGAAGCCACAAGACCACAGCACTTCAACAG 1761
Query 2391 GGTCACATAACACAGATGCATCACTTCACCTACAATGGCGATAGTCACCACACAGAGATC 2450
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1762 GGTCACATAACACAGATGCATCACTTCACCTACAATGGCGATTGTCACCACACAGAGATC 1821
Query 2451 CCTCAAGGTGATGATGATACTGATATGGTACAAGACATGGAGATATCCCCTACCTGA 2507
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1822 CCTCAAGGTGGTGATGATATTGATATGGTACAAGACATGGAGATATCCCCTACCTGA 1878
> Ahg331222 jgi|Araly1|331222|fgenesh1_pm.C_scaffold_8000565
Length=582
Score = 401 bits (217), Expect = 1e-110
Identities = 355/417 (85%), Gaps = 28/417 (7%)
Strand=Plus/Plus
Query 1 ATGGAGTGGTCTGAAGAAGAAGGAGAGATTCTACCTGATTTC-GTTGATAACTACTATTT 59
||||||||||| ||||||||||| |||||||||||||| ||| |||||| | ||||||||
Sbjct 1 ATGGAGTGGTCAGAAGAAGAAGGCGAGATTCTACCTGA-TTCTGTTGATGAGTACTATTT 59
Query 60 CATTGATCAAAGTGA-AGAGCTTGTCAAGTTTTGTGATTTGCCACTGAAATGGAATAGCG 118
| ||||||||||||| | | | |||||||||||||||| |||||| | | | ||
Sbjct 60 CGTTGATCAAAGTGACACA-CCTGTCAAGTTTTGTGATGTGCCAC-----T--CA-A-CG 109
Query 119 TTGATTATGATGA-TGATAGCTCAGGATTGTCTGTGTTTCTGCGTGGTAATATTGACTCT 177
|||| | | | | ||||||||| |||| | |||||||| |||||||||| || ||||
Sbjct 110 TTGA-T-TCA--ACTGATAGCTCGGGATCGCCTGTGTTTTTGCGTGGTAACATAAACTCC 165
Query 178 GGAGACGAGTCATTCTCTAAGCTTGTTAAAGGTTGGAACTTTTATCTTTCTTCTGTTGAT 237
|||||||||||||| ||||||||||| ||||||||||||||| | | | ||||||||||
Sbjct 166 GGAGACGAGTCATTTTCTAAGCTTGTCAAAGGTTGGAACTTTGAAC--T-TTCTGTTGAT 222
Query 238 GAACATCCCAAAATTGAGGTTCTTCTACATGGG-T--TGCATTGGATAACTCTACAAAGC 294
||||||||||| || ||||| ||||| |||||| | |||||||||||||||||||||||
Sbjct 223 GAACATCCCAAGATCGAGGTGCTTCTTCATGGGATGATGCATTGGATAACTCTACAAAGC 282
Query 295 CCAAGAAAGAGTTATGA-GACTTTGATAAGAACAAGTCTGGTTACTCTTCAGTTTCTTCA 353
|| ||||| |||||||| | ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 283 CCTAGAAAAAGTTATGAAG-CTTTGATTAGAACAACTCTGGTTACTCTTCAGTTTCTTCA 341
Query 354 CTTTGTTAAAAGGGATCCGGATG-TTGCAAGTGGTGATGTGTGGAGTAGTTTACAGA 409
|||||| |||||| ||||||||| || |||||| ||||||||||| |||||||||||
Sbjct 342 CTTTGTCAAAAGGAATCCGGATGCTT-CAAGTGATGATGTGTGGAATAGTTTACAGA 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104938624975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5