BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48100.1
Length=2063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949199 jgi|Araly1|949199|scaffold_801086.1 2543 0.0
> Ahg949199 jgi|Araly1|949199|scaffold_801086.1
Length=1735
Score = 2543 bits (1377), Expect = 0.0
Identities = 1628/1748 (93%), Gaps = 21/1748 (1%)
Strand=Plus/Plus
Query 142 ATTTACTAAAACTCTTCCAAAATGTCACATTCCTTCTTCAATTTATTCCTAATCTCTCTT 201
||||||| |||| || ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1 ATTTACT-AAACCCTCCCAAAATGTCACATTCCTTCTTCCATTTCTTCCTAATCTCTCTT 59
Query 202 TTCCTCTACAACAATTGCATTGCGCATCACTATACATTCACGGTTAGGGAAGTTCCATAT 261
||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 60 TTCCTCTACAAAAATTGCATCGCGCATCGCTACACATTCACGGTTAGGGAAGTTCCATAT 119
Query 262 ACGAAACTGTGTAGCACGAAGGCGATTTTAACCGTTAATAGTCAGTTTCCTGGACC-GAT 320
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 120 ACGAAACTGTGTAGCACGAAGACGATTTTAACCGTTAATAGTCAGTTTCCTGGACCTG-T 178
Query 321 TATAAAGGTTCACAAAGGAGACACTATTTATGTTAACGTTCAAAACCGAGCTAGTGAAAA 380
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 TATAAAGGTTCACAAAGGAGACACTATTTATGTTAACGTTCGTAACCGAGCTAGTGAAAA 238
Query 381 CATCACAATGCATTGGCATGGTGTAGAGCAGCCGAGAAATCCGTGGTCAGATGGTCCTGA 440
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 239 CATCACAATGCATTGGCATGGTGTAGAGCAGCCAAGAAACCCGTGGTCAGATGGTCCTGA 298
Query 441 ATACATCACACAATGCCCGATTCGACCCGGGTCAGATTTTTTGTACAAAGTCATATTTTC 500
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 ATACATCACACAATGCCCGATTCGACCCGGGTCAGATTTTATGTACAAAGTCATATTTTC 358
Query 501 CATCGAAGACACGACTGTTTGGTGGCACGCGCATAGCTCTTGGACACGTGCAACTGTACA 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TATCGAAGACACGACTGTTTGGTGGCACGCGCATAGCTCTTGGACACGTGCAACTGTACA 418
Query 561 CGGTCTTATTTTCGTATATCCTCGCCCCCCGCAAATCC-TCCCTTTTCCAAAGGCAGACC 619
||||||||||||||||||||||||||||||| || ||| |||| || |||||||| ||||
Sbjct 419 CGGTCTTATTTTCGTATATCCTCGCCCCCCGGAA-TCCCTCCCGTTCCCAAAGGCGGACC 477
Query 620 ATGAAGTCCCCATAATTTTGGGTGAGTGGTGGAAGAGGGATGTGAGAGAGGTCGTTGAGG 679
|||||||||| || ||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 478 ATGAAGTCCCTTTAGTTTTGGGGGAGTGGTGGAAAAGGGATGTGAGAGAGGTGGTGGAGG 537
Query 680 AGTTCGTAAGGACAGGAGGGGCTCCTAATGTGTCCGATGCTTTGACCATCAATGGACATC 739
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 AGTTTATAAGGACAGGAGGGGCTCCTAATGTGTCCGATGCTTTGACAATCAATGGACATC 597
Query 740 CTGGTTTCTTGTATCCTTGCTCTAAATCAGATACATTTCATCTCACGGTAGAGAAGGGGA 799
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 598 CTGGTTTCTTGTATCCTTGCTCTAAATCAGATACCTTTCATCTCAAGGTAGAGAAGGGCA 657
Query 800 AAACCTACCGCATTCGGATGGTAAATGCCGCAATGAACCTACCTCTCTTTTTCGCAATCG 859
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 658 AAACCTACCGCATTCGGATGGTAAATGCCGCGATGAACCTAATTCTATTTTTCGCAATCG 717
Query 860 CGAACCACAGCCTCACCGTAGTCT-CGGCCGATGGACACTACATCAAACCTATAAAGGCT 918
||||||||||||||||||| || | |||| ||||||||||||||||||||| ||||||||
Sbjct 718 CGAACCACAGCCTCACCGTGGT-TGCGGCAGATGGACACTACATCAAACCTTTAAAGGCT 776
Query 919 ACTTATATCACTATATCCCCTGGCGAAACACTAGACATGTTATTACACGCTGACCAAGAC 978
|||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 777 ACTTATATAACCATATCCCCTGGCGAAACGCTAGACATGTTATTACAAGCTGACCAAAAC 836
Query 979 CCCGAACGCACTTATTACATGGCTGCCAGAGCTTACCAAAGCGGAAATATCGATTTCAAC 1038
|| |||||| |||||||||||| |||||||||||||||| ||||||||||| |||| ||
Sbjct 837 CCAAAACGCATTTATTACATGGCGGCCAGAGCTTACCAAACCGGAAATATCGCTTTCGAC 896
Query 1039 AACTCCACTACCATAGGAATCTTAAGTTACACCTCTTCATGCAAAGCTAAAACATCATCG 1098
|||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||
Sbjct 897 AACTCCACTACCATAGGAATCTTAAGTTACTTCTCTTCACACAAAGCGAAAACACCATCG 956
Query 1099 TTTTCAGGATATTACCCAACCCTTCCTTTTTACAATGACACCTCAGCAGCTTTTGGATTC 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 957 TTTTCAGGATATTACCCAACCCTTCCTTTTTACAATGACACCTCAGCAGCTTTCGGGTTC 1016
Query 1159 TTTACCAAGATCAAATGCTTATTCTCCGGTCAAGTTCCTGTCCAAATCTCTCGTAGGATA 1218
||||||||||||||| || ||| |||||||||||||||||| |||||||| |||||||||
Sbjct 1017 TTTACCAAGATCAAAAGCCTATACTCCGGTCAAGTTCCTGTTCAAATCTCGCGTAGGATA 1076
Query 1219 ATCACGACGGTTTCAATAAATCTTCGCATGTGTCCTCAAAACTCGTGCGAAGGTCCAAAT 1278
||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1077 ATCACAACGATTTCAATAAATCTCCGCATGTGTCCTCAAAACTCTTGCGAAGGTCCAAAC 1136
Query 1279 GGGTCGAGATTAGCAGCGAGTATGAACAACATATCGTTTGTCACACCAAGTCACGTGGAC 1338
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 GGGTCGAGATTAGCAGCGAGTATGAACAACATATCGTTTGTCACACCAAGTCACATGGAC 1196
Query 1339 ATACTAAAAGCTTATTACTATCACATTAAAGGCGTTTATGGAACGCGGTTTCCGGAGTTT 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1197 ATACTAAAAGCTTATTACTATCACATTAAAGGCGTTTATGGAACGCGGTTTCCAGAGTTT 1256
Query 1399 CCACCGTTGATTTTT-AATTTCACCGCAGAAAATCAGCCATTGTTTTTGGAAACTCCGAG 1457
||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1257 CCACCGTTG-TTTTTCAATTTCACGGCAGAAAATCAACCATTGTTTTTGGAAACTCCGAG 1315
Query 1458 ACTCGCAACCGAGGTAAAGGTGATTGAGTTCGGTCAAGTGGTTGAGCTTGTTATTCAAGG 1517
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1316 ACTCGCGACTGAGGTAAAGGTGATTGAGTTCGGGCAAGTGGTTGAGCTTGTTATTCAAGG 1375
Query 1518 GACTAGTTTGGTTGGTGGTGGACTCGATCATCCTATGCATCTCCATGGTTTTAGCTTCTA 1577
||| ||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 1376 GACGAGTTTGGTTAATGC---ACTCGATCATCCTATGCATCTCCACGGTTTTAGCTTCTT 1432
Query 1578 TGTGGTTGGAGTAGGGTTCGGGAACTATAACATAAGTGAAGAAGATCCGTCGTCGA--GA 1635
|||||||||||||||||| ||||||| |||||||||||||| ||| || || || | |
Sbjct 1433 TGTGGTTGGAGTAGGGTTTGGGAACTTTAACATAAGTGAAGGAGAACCATCTTC-ATTG- 1490
Query 1636 TATAATCTC-TACGATCCACCGTATAAAAATACAATGACCGTGCCTAGGAATGGTTGGAT 1694
||||||||| | ||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct 1491 TATAATCTCGTG-GATCCACCGTACAAAAATACAATGACCGTGCCCATTAATGGTTGGAT 1549
Query 1695 CGCTATCAGATT-CGTAGCTGATAATCCCGGGGTTTGGTTCATGCACTGTCACTTGGATA 1753
|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1550 CGCTATCAGATTTCA-AGCTAATAATCCCGGGGTTTGGTTCATGCACTGTCACTTGGATA 1608
Query 1754 GACATCAAACGTGGGGTATGAATGTTGTGTTCATTGTTAAGAATGGTAGAGAGCCAAATC 1813
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1609 GACATCAAACGTGGGGTATGAATGTTGTGTTCATTGTTAAGAATGGGAGAGAGCCAAATC 1668
Query 1814 AGCAGATTCTGCCTCCACCAGATGATTTGCCGCCTTGCTATGAATAATTAAATGTTACCA 1873
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1669 AGCAGATTCTGCCTCCACCAGATGATTTGCCGCCTTGTTATGAATAATTGAATGTTACCA 1728
Query 1874 AATGCTTT 1881
||||||
Sbjct 1729 G-TGCTTT 1735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77589829065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5