BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48130.1
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494864 jgi|Araly1|494864|fgenesh2_kg.8__680__AT5G48130.1 3090 0.0
> Ahg494864 jgi|Araly1|494864|fgenesh2_kg.8__680__AT5G48130.1
Length=2093
Score = 3090 bits (1673), Expect = 0.0
Identities = 1966/2105 (93%), Gaps = 29/2105 (1%)
Strand=Plus/Plus
Query 3 TCCTCTTGTTTCGTGGATCCTAGAACCCTTTTTCTTCCTCTTCAATCCCCAAAACACGCA 62
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TCCTCTTGTTTTGTGGATCCTAGAACCC-TTTTCTTCCTCTTCAATCCCCAAAACACGCA 59
Query 63 ACTTTCTTCTTCAAAAATATAATAGTGAAGAAGAATAAATGAACGACCAAATGTCTCCAG 122
|||||||||||||||||| ||| |||||||||||||||||| | |||||| |||||| |
Sbjct 60 ACTTTCTTCTTCAAAAATGTAACAGTGAAGAAGAATAAATGGATGACCAAGTGTCTCTAT 119
Query 123 TTTCATCA-TACCATATTGGTTTTGATATACTTTATCTACTTAGTTTT-------CACAA 174
|||||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 120 TTTCATCATTACCATATTGGTTTTGATATACTTTATCTACATAGTTTTCAAAAACCACAA 179
Query 175 TTTATATACTCAATAATGGAAACTTTCAGCCTCAAGGATTGTTCGTCCGTCGCCTCCAGC 234
|||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 180 GTTATATACTCAATAATGGAAACTTGCAGCATCAAGGATGGTTCGTCCGTCGCCTCCAGC 239
Query 235 CCGATTTCTTCTCCAAATATCAGTACCCTTTTGAAAATCAAAGTTCTTTCTTGGAGTAAA 294
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGATTTCTTCTCCGAATATTAGTACCCTTTTGAAAATCAAAGTTCTTTCTTGGAGTAAA 299
Query 295 GAGACCGGTCTACCCGCGTCAGTACATGTTCGAGTTTGCAACAAGAGTTTTAACCTTCAC 354
|||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 300 GAGACCGGTCTACCTGCGTCAGTACATGTTCGAGTGTGCAACAGGAGTTTTAACCTTCAC 359
Query 355 AAGA-GTCTCTTGTGTGCAAAGAGCGGATATTTTAAGGAAAGAGAGGATCAGCTATCGGA 413
|||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 AAGACG-CTCTTGTGTACAAAGAGCGGATATTTTAAGGAAAGAGAAGATCAGCTATCGGA 418
Query 414 GATCGAGATACCACAAGAGTTTCCTGGTGGAGCAGAGACCTTTGAGAAGATTATGCTTTT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATCGAGATACCACAAGAGTTTCCTGGTGGAGCAGAGACCTTTGAGAAGATTATGCTTTT 478
Query 474 CATTTATGGCTGTCCAACTTTAATACATCCTTTCAACATCGCTGGACT-ACGATGTGCAG 532
||| |||||||||||||||||||||||||| |||||||||||||| || | |||||||||
Sbjct 479 CATATATGGCTGTCCAACTTTAATACATCCATTCAACATCGCTGGGCTTA-GATGTGCAG 537
Query 533 CTCAATTTCTTGAAATGACAGAGCAACATTCGACGGGTAACCTCTGCGAGAGATTTGACC 592
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 538 CTCAATTTCTTGAAATGACAGAACAACATTCGACGGGAAACCTCTGCGAAAGATTTGACC 597
Query 593 TTTATCTAAACCAAGTTGTCTTGCAAAACTGGGATGACACGTTAGTTGTTCTGAAGAAAT 652
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 TATATCTAAACCAAGTTGTCTTGCAAAACTGGGATGATACGTTAGTTGTTCTGAAGAAAT 657
Query 653 GTCAGGATCTAGTGCCTTGGTCTGAAGATCTACTCATCGTGAGCCGGTGCATTGAGTCTC 712
||||||||||| | ||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 658 GTCAGGATCTATTACCTTGGTCTGAAGATTTACTAATCGTGAGCCGGTGCATAGAGTCTC 717
Query 713 TGGCTTTCACGGCTTGTATGGAGATTCTCGATCCCGAAAGACGAAGAGAAAAGCCAGTCA 772
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct 718 TGGCTTTCACGGCTTGTATGGAGATTCTTGATCCGGAAAGACGAAGAGAAAAGCCGGT-A 776
Query 773 -TCATGCTTGAAGGTATGGTGAATCAACCATGGGAATATACAAACATAGAGAGAATAATA 831
|||||||||||||| ||||||||||||||||||||||||||| | |||||| ||| |||
Sbjct 777 GTCATGCTTGAAGGTTTGGTGAATCAACCATGGGAATATACAACCGTAGAGAAAATTATA 836
Query 832 AACCAAGATACTTGGATCAAAGACCTCACGGATCTTCCATTCGAATTCTTCAAA-AAGAT 890
||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| |
Sbjct 837 AACCAAGATACTTGGATCAAAGACCTCACAGATCTTCCATTCGAATTCTTCAGACAAG-T 895
Query 891 TATTGGGTCGCTTAGAAGACAAGGTATGAAAGAAAGATATGTAAGTCCATTGGTCGCCCT 950
|||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| | |
Sbjct 896 GATTGGGTCACTTAGAAGACAAGGGATGAAAGAAAGATATGTAAGTCCATTGATCGTCTT 955
Query 951 TTACGCCAGTAAATCTGTAATACCTGAAGGTCAAACTAATACTGATATTCTGCAAAGAGC 1010
||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 956 TTATGCCAGCAAATCTGTAATACCTGAAGGTCAAAGTAATACTGATATTCTGCAAAGAGC 1015
Query 1011 TCTAGATCTGCTTCTTACAAGAGACAAGGCATATAGGTTTGTTCCAGTTGGGTTTTATTT 1070
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1016 TCTTGATCTGCTTCTTACAAGAGACAAGGCATATAGGTTTGTTCCAGTCGGGTTTTATTT 1075
Query 1071 TGCGTGTCTTGCACACAATTTGAAGCATGACACTGTGTTAAAGCTGCAAGATCAGATTGT 1130
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1076 TGCGTGTCTCGCACACAATTTGAAGCATGAAACTGTGTTGAAGCTGCAAGATCAGATTGT 1135
Query 1131 ATCTCTTCTTCACACTGCCCA-ACCCGAAAACTTTATATACCCGAAAGCCGGGAACAGGC 1189
|||||||||||||| ||| || ||| |||||||||||||||||||||||||||||| |||
Sbjct 1136 ATCTCTTCTTCACATTGCACACACC-GAAAACTTTATATACCCGAAAGCCGGGAACGGGC 1194
Query 1190 AAGTTGCTTTCAGTCAGGAGTTGCTTACAATGGAAAGCCTGTTTTCAGTATATGTATCAA 1249
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1195 AAGTTGCTTTCAGTCAGGAGTTGCTTACAATGGAAAGCCTGTTTTCAACATATGTATCAA 1254
Query 1250 CAGAATCGGAACGCCATCTTACTTCCTCCTCAAGCAACGTGAGAGTTGGAAAACTGTGGG 1309
||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1255 CAGAATCAGAACGACATCTTACTTCCTCCCCAAGCAACATGAGAGTTGGAAAATTGTGGG 1314
Query 1310 ATATTTTTCTCTCTCGTTTACCGTATGATCAAGAGATGAAAACTACAAGGTTCATTGAGC 1369
|| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1315 ATGTTTATCTCTCTCGTTTACCATATGATCAAGAGATGAAAACAACAAGGTTCATTGAGC 1374
Query 1370 TGATTGAGACAGTCCCAATGTCATTCAGAGAGAGTCATGACCAACTTTACCTTGCAGTAA 1429
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1375 TGATTGAGACAGTCCCAATGTCATTCAGAGAGAGTCATGACCAACTCTATCTTGCAGTAA 1434
Query 1430 ACGCATTTCTTCAGGTACATACAAATATATCTCAAGAAGAAAAAGGATCAATCTGCAGTT 1489
|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1435 ACGCATTTCTTCAGGTACATACAACCATATATCAGGAAGAAAAAGGATCAATCTGCAGTT 1494
Query 1490 ACCTAAACTGCCAAAAGCTATCACAAG-AAGCGTCCCTCGAACTCGTTAAAAACGAGAAA 1548
||||||||| |||||| |||||||||| || |||||||| ||||||| ||||||||| ||
Sbjct 1495 ACCTAAACTCCCAAAAACTATCACAAGCAA-CGTCCCTCCAACTCGTGAAAAACGAGCAA 1553
Query 1549 ATGCCATTACGTTTGGTTGTCCAAGCTCTCTTTATCCAACAGCTGAACACACACCAAGCT 1608
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1554 ATGCCATTACGTTTGGTTGTCCAAGCTCTCTTTATCCAACAGCTCAACACACACCAAGCT 1613
Query 1609 TTTAAAGACTGTTCGGACTCATTCAGATTCACAAACTCTGCAGACTTCTCTGGTAGTGTT 1668
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1614 TTCAAAGACTGTTCTGACTCATTCAGATTCACAAACTCTGCAGACTTCTCCGGTAGTGTT 1673
Query 1669 GTCCCAAGCTCAAGACCCTTAACTTCCCAACAAAGCCCTTGCACTGATGATGAAAC-GGG 1727
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1674 GTTCCAAGCTCAAGACCCTTAACATCCCAACAAAGCCCTTGCACTGATGATGAAACCGGG 1733
Query 1728 GCCAAGAAACAGACCGTTATGCTTCTTGATGCAGAAAGATGCAACATTGGATGAGTTTGA 1787
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1734 GC-AAGAAACAGGCCGTTATGCTTCTTGATGCAGAAAGATGCAACATTGGATGAGTACGA 1792
Query 1788 GTCAACGAGCTTCAGAATCCATAACCTCGAAGAGCAACTAGTTTCTTTAAAGAAGAGCCT 1847
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 GTCAACGAGCTTTAGAATCCATAACCTCGAAGAGCAACTAGTTTCTTTAAAGAAGAGCCT 1852
Query 1848 TCACTCCCACGACAACCTAAAGAAGCCAAATTGCCTTGGAAAAAGATCAGCGAGTAGAAA 1907
||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1853 TCAGTCCCACAACAACCAAAAGAAGCCAACTTGCCTTGGAAAAAGATCAGCGAGTAGAAA 1912
Query 1908 CAAAAACACCTTT-GGCCAAGTCACAACGGCTTGTATTGGCTCTGTAAGCTTTACTTCAC 1966
||| ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1913 CAAGAACAC-TTTCGGCCAAGTCAAAACGGCTTGTATTGGCTCTGTAAGCTTTACTTCAC 1971
Query 1967 AGAGAAAATATGCAAATAGGCTACTCCAGATTCTACGTAGAGTTAACTTGTTTGGAAGTA 2026
||||||| ||||| |||| ||| |||| | | ||||||||||||| ||||||||||||||
Sbjct 1972 AGAGAAATTATGCCAATAAGCTGCTCCGGGTACTACGTAGAGTTATCTTGTTTGGAAGTA 2031
Query 2027 GAAAAACTAATAGATCGAAAGCAGGTGAGAGTGAAAGATGAA-CATTTATCAAATGTAAG 2085
|||||||||||||| ||| ||| ||||||||| ||||||| ||| |||||||||||||
Sbjct 2032 GAAAAACTAATAGAA--AAA-CAGATGAGAGTGAGAGATGAAACATGTATCAAATGTAAG 2088
Query 2086 TATAA 2090
|||||
Sbjct 2089 TATAA 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80141875480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5